HHsearch alignment for GI: 254780170 and conserved domain: PRK12681
>PRK12681 cysB transcriptional regulator CysB; Reviewed.
Probab=97.33 E-value=0.015 Score=36.50 Aligned_cols=217 Identities=9% Similarity=0.063 Sum_probs=137.5
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
T Consensus 91 ~~G~L~Ia~~~t~a~~~L-----------P~~i~~F~~~~--P~v~l~l~~~~~~~i~~~l~~g~~DlaI~~e~~--~~- 154 (324)
T PRK12681 91 DKGSLYIATTHTQARYAL-----------PPVIKGFIKRY--PRVSLHMHQGSPTQIAEAAAKGEADFAIATEAL--HL- 154 (324)
T ss_pred CCCEEEEEECHHHHHHHH-----------HHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCC--CC-
T ss_conf 763499985358888772-----------59999999878--998446531787999999987998723124666--66-
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCCEEE-ECCHHHHHH
Q ss_conf 1027843532234402346302113-----47536417862-0343134269999999986299850787-479899999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYHPIV-FERVEEIDA 184 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~~v~-~~~~~~a~~ 184 (342)
T Consensus 155 -~~dl~-~~P~~~~~~~vvvp~~HPLa~~~~itl~dL~~~plI~~~~g~~~R~~id~~f~~~g~~P~iv~e~~~~~~I~~ 232 (324)
T PRK12681 155 -YDDLI-MLPCYHWNRSVVVPPDHPLAKKKKLTIEELAQYPLVTYVFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKT 232 (324)
T ss_pred -CCCCE-EEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf -88746-8640003222457999965579999999986998596149982999999999988997607999898999999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 9873960299825047999998367800100256--44423710100027775799998877443311212330152089
Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNIN 262 (342)
Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~ 262 (342)
T Consensus 233 ~V~~GlGV~il------p~mA~~~~~d~~l~~~~~~~~f~~~~t~i~~r~g~-----~l~~~~~~Fi~~~~p~l~~~~~~ 301 (324)
T PRK12681 233 YVRLGLGVGVI------ASMAVDPVADPDLVAIDASHLFAHSTTKIGFRRGT-----FLRSYMYDFIERFAPHLTRDVVE 301 (324)
T ss_pred HHHHCCEEEEC------HHHHCCCCCCCCEEEEECCCCCCCCEEEEEEECCC-----CHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99959913970------35551965578817843655677764799997997-----15799999999861204899999
Q ss_pred HHHHCCCCHHHHHHH
Q ss_conf 886226717788762
Q gi|254780170|r 263 QVSKDTTNPDVQRFL 277 (342)
Q Consensus 263 ~~~~~s~~p~i~r~l 277 (342)
T Consensus 302 ~~~~~~~~~~~~~~~ 316 (324)
T PRK12681 302 KAVALRSNEEIEALF 316 (324)
T ss_pred HHHHCCCHHHHHHHH
T ss_conf 998347889999997