HHsearch alignment for GI: 254780170 and conserved domain: TIGR02424
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ; InterPro: IPR012787 Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate . Members occur only in proteobacteria.; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0019619 protocatechuate catabolic process, 0045941 positive regulation of transcription.
Probab=94.53 E-value=0.42 Score=27.30 Aligned_cols=164 Identities=13% Similarity=0.118 Sum_probs=108.3
Q ss_pred CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCC-----CCHHHHCCCCEEE
Q ss_conf 20259981431002677439627998124325320110278435322344023463021134-----7536417862034
Q gi|254780170|r 76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGI-----SSVSQLSGASICV 150 (342)
Q Consensus 76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i-----~s~~dL~G~~I~v 150 (342)
T Consensus 122 ~~~~i~tG~n~~Lld~LR~G~LDlVvGRL~a-pe~--MqGl~Fe-~LY~E~v~~VVragHPL~~~p~~~~~~L~~yPvl~ 197 (300)
T TIGR02424 122 LRLRIVTGENAYLLDQLRVGELDLVVGRLGA-PET--MQGLSFE-HLYNERVVFVVRAGHPLLAAPSLSVASLADYPVLL 197 (300)
T ss_pred CEEEEEECCCHHHHHHHCCCCCEEEEECCCC-CHH--HCCCCCC-CCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 5589987785787987228980277606888-321--1586425-14477337887085785578877778873388104
Q ss_pred E-ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE--EECCHHHHHHHHHCCCCHHHCCCC--CCCCCCC
Q ss_conf 3-1342699999999862998507874798999999873960299--825047999998367800100256--4442371
Q gi|254780170|r 151 Q-AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY--TGDISALYALKLTNDRPSEHVILP--DIISKSP 225 (342)
Q Consensus 151 ~-~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~--~~D~s~La~~~~~~~~p~~~~il~--e~iskEP 225 (342)
T Consensus 198 P~~g~~IR~~~erll~a~G~~~l~~r~EtvS~~fgR~y~~~sdA~WiiS~g-vv---~~dl~-~G~L~~Lp~~~~~t~GP 272 (300)
T TIGR02424 198 PPEGSIIRPLVERLLIACGIPALPQRIETVSDSFGRRYVRESDAVWIISEG-VV---AKDLA-DGTLVELPVDTRETAGP 272 (300)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCHH-HH---HHHHC-CCCEEECCCCCCCCCCC
T ss_conf 862226799999999874765566013443157887776454725772667-89---88752-89277646575778877
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 010002777579999887744331
Q gi|254780170|r 226 LAPAIIQGDTEWYNIVSWTHYAMV 249 (342)
Q Consensus 226 lg~avr~gD~~w~d~V~W~~~ali 249 (342)
T Consensus 273 VGL~~R~d~-~~s~aaq~f~~alr 295 (300)
T TIGR02424 273 VGLCTRPDE-QLSRAAQLFVDALR 295 (300)
T ss_pred CCCCCCCCC-CCCHHHHHHHHHHH
T ss_conf 021548887-78989999999999