HHsearch alignment for GI: 254780170 and conserved domain: TIGR03339

>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=93.03  E-value=0.78  Score=25.59  Aligned_cols=172  Identities=16%  Similarity=0.140  Sum_probs=107.4

Q ss_pred             CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf             79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI  112 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~  112 (342)
T Consensus        86 ~g~l~ig~~~~---~-----------~l~~~l~~f~~~~--P~v~i~i~~~~~~~~~~~L~~~~~Di~i~~~~~---~--  144 (279)
T TIGR03339        86 EGSLRIAATAP---Y-----------YVLDLVARFRQRY--PGIEVSVRIGNSQEVLQALQSYRVDVAVSSEVV---D--  144 (279)
T ss_pred             CCEEEECCCHH---H-----------HHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHCCCEEEEEECCCC---C--
T ss_conf             45168617517---7-----------8999999999858--986057895580877754025965899972788---9--


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHH
Q ss_conf             027843532234402346302113-----47536417862-034313426999999998629985078-74798999999
Q gi|254780170|r  113 SLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAA  185 (342)
Q Consensus       113 ~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~a  185 (342)
T Consensus       145 ~~~~~~-~~l~~~~~~~~~~~~~~la~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (279)
T TIGR03339       145 DPRLDR-VVLGNDPLVAVVHRQHPLAERESVTLEELAGQPLLMREPGSVTRQTTEEALAAAGVAPRPALEIGSREAIREA  223 (279)
T ss_pred             CCCEEE-EEEECCCEEEEEECCCHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf             998399-9940444899991886332399999999769998982899839999999999779987536778969999999


Q ss_pred             HHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCC
Q ss_conf             873960299825047999998367800100256--4442371010002777
Q gi|254780170|r  186 YRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGD  234 (342)
Q Consensus       186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD  234 (342)
T Consensus       224 v~~G~GiailP~~~---v~----~~~-~l~~~pl~~~~~~~~~~l~~~~~r  266 (279)
T TIGR03339       224 VLAGLGVSVVSAAE---VG----RDP-RLRVLPIVGAEPTMDEYLYCLKER  266 (279)
T ss_pred             HHHCCEEEEEEHHH---HH----HCC-CEEEEECCCCCCCCEEEEEEECCC
T ss_conf             99799389714899---61----098-989998988898627999998998