>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.

Probab=99.04 E-value=1.6e-09 Score=80.60 Aligned_cols=167 Identities=14% Similarity=0.161 Sum_probs=112.9 Q ss_pred CEEEEEEE--CCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCCCC Q ss_conf 94999871--789883068898988015099999999996798220259981-431002677439627998124325320 Q gi|254780170|r 34 GFLKCGIN--TGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWTLLR 110 (342) Q Consensus 34 G~L~vGv~--~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~R 110 (342) T Consensus 2 ~~~kig~S~w~Gw~Pw~~A~e~Gifk--------Kw~~k~G---i~Vel~~f~dy~~si~a~~AG~~Dg~~~Tn~Dal~i 70 (328) T TIGR03427 2 DKFKVCWSIYAGWMPWGYAAQQGIVD--------KWADKYG---ITIEVVQINDYVESINQYTAGKFDGCTMTNMDALTI 70 (328) T ss_pred CCEEEEEECCCCHHHHHHHHHCCCHH--------HHHHHCC---CEEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHH T ss_conf 93399972685388899999749265--------5588759---737999828848889999758977477626156651 Q ss_pred HHCCCCCCCCCC---CCCC-EEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC---CEEEECCHHHHH Q ss_conf 110278435322---3440-234630211347536417862034313426999999998629985---078747989999 Q gi|254780170|r 111 EISLGLAFRPIT---YFDG-QGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKY---HPIVFERVEEID 183 (342) Q Consensus 111 d~~~~v~Fs~~~---~~dg-q~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~---~~v~~~~~~~a~ 183 (342) T Consensus 71 ~aa~Gvd~~~vlv~D~SnG~D~Ivak---~~~slaDLKGKkVav~~~svshyLL~rALe~aGLs~~DV~vVn-~~~~d~~ 146 (328) T TIGR03427 71 PAAGGVDTTALIVGDFSNGNDGIVLK---GGKSLADLKGQKVNLVELSVSHYLLARALESVGLSEKDVKVVN-TSDADIV 146 (328) T ss_pred HHCCCCCEEEEEEECCCCCCCEEEEC---CCCCHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCHHHEEEEE-CCCHHHH T ss_conf 31179972899985257887479978---9988788489888324787079999999998699889907884-7954699 Q ss_pred HHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC Q ss_conf 99873960299825047999998367800100256 Q gi|254780170|r 184 AAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP 218 (342) Q Consensus 184 ~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~ 218 (342) T Consensus 147 aAf~sg~VdA~vTWeP~ls~i~~---~~ga~~iF~ 178 (328) T TIGR03427 147 AAFITKDVTAVVTWNPQLSEIKA---QPGANEVFD 178 (328) T ss_pred HHHHCCCCCEEEEECHHHHHHHH---CCCCCEEEE T ss_conf 99747998789997856899972---899826442

HHsearch alignment for GI: 254780170 and conserved domain: TIGR03427