HHsearch alignment for GI: 254780170 and conserved domain: TIGR03427
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=90.85 E-value=0.39 Score=27.51 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=43.7
Q ss_pred CEEECCCCCEEEEHH------HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 306889898801509------9999999996798220259981431002677439627998124325320
Q gi|254780170|r 47 FAEVKANGDWKGFDV------DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLR 110 (342)
Q Consensus 47 fs~~d~~G~~~GfDV------Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~R 110 (342)
T Consensus 99 ~slaDLKGKkVav~~~svshyLL~rALe~a-GLs~~DV~vVn~~~~d~~aAf~sg~VdA~---vTWeP~l 164 (328)
T TIGR03427 99 KSLADLKGQKVNLVELSVSHYLLARALESV-GLSEKDVKVVNTSDADIVAAFITKDVTAV---VTWNPQL 164 (328)
T ss_pred CCHHHHCCCEEECCCCCCHHHHHHHHHHHC-CCCHHHEEEEECCCHHHHHHHHCCCCCEE---EEECHHH
T ss_conf 887884898883247870799999999986-99889907884795469999747998789---9978568