HHsearch alignment for GI: 254780170 and conserved domain: pfam03180

>pfam03180 Lipoprotein_9 NLPA lipoprotein. This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to pfam00497 which are solute binding proteins.
Probab=95.22  E-value=0.28  Score=28.45  Aligned_cols=158  Identities=19%  Similarity=0.179  Sum_probs=84.0

Q ss_pred             HHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCC-CCHHCCCCCCC--CCCCCCCEEEEEECCCCCCC
Q ss_conf             99999996798220259981-4310026774396279981243253-20110278435--32234402346302113475
Q gi|254780170|r   64 CRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWTL-LREISLGLAFR--PITYFDGQGFIMHKKKGISS  139 (342)
Q Consensus        64 ~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~-~Rd~~~~v~Fs--~~~~~dgq~~lVrk~~~i~s  139 (342)
T Consensus        17 v~~~~~~~G---i~veiv~F~Dy~~pN~AL~~GeIDaN~fQH~~yl~~~n~~~g~~L~~v~~~~~~p~glYS---~k~ks   90 (236)
T pfam03180        17 AKPLAKKKG---LDLEIVEFTDYVQPNTALADGEIDANAFQHLPYLDQFNKEGGLDLVAVGNTHVEPIGLYS---KKYKS   90 (236)
T ss_pred             HHHHHHHCC---CEEEEEEECCCCCHHHHHHCCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEECCEEEEE---CCCCC
T ss_conf             999999649---879999816864550797789955244438999999999779967996304672379543---37688


Q ss_pred             HHHH-CCCCEEEEECCCHHHHHHHHHHHCCC---------------------CCCEEEECCHHHHHHHHHCCCEEEEEEC
Q ss_conf             3641-78620343134269999999986299---------------------8507874798999999873960299825
Q gi|254780170|r  140 VSQL-SGASICVQAGTTTELTLADYFKAHNM---------------------KYHPIVFERVEEIDAAYRAHRCDAYTGD  197 (342)
Q Consensus       140 ~~dL-~G~~I~v~~GTT~e~~l~~~~~~~~~---------------------~~~~v~~~~~~~a~~al~~Gr~DA~~~D  197 (342)
T Consensus        91 l~~lp~Ga~IaIpnD~sN~~RAL~lL~~aGLI~Lk~~~~~~~t~~DI~~Npk~l~~~ev~-a~ql~~~l~d--vD~avin  167 (236)
T pfam03180        91 LSELPDGATIAVPNDPSNEGRALLLLEKAGLIKLKDGAGLLATVKDITENPKNLKIKELE-AAQLPRALDD--VDAAVIN  167 (236)
T ss_pred             HHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHCCCCCEEEEEC-HHHHHHHCCC--CCEEEEC
T ss_conf             758579998981588442999999999889889768999878988897286776699916-7775542166--5789986


Q ss_pred             CHHHHHHHHHCCCCHHHCCCCCCCCCCCE--EEECCCCC
Q ss_conf             04799999836780010025644423710--10002777
Q gi|254780170|r  198 ISALYALKLTNDRPSEHVILPDIISKSPL--APAIIQGD  234 (342)
Q Consensus       198 ~s~La~~~~~~~~p~~~~il~e~iskEPl--g~avr~gD  234 (342)
T Consensus       168 ~n--~a~~agl-~p~~~~l~~e~-~~~~y~n~ivvr~~~  202 (236)
T pfam03180       168 TN--YALQAGL-DPKKDALFEED-KDSPYVNIIVVREDD  202 (236)
T ss_pred             HH--HHHHCCC-CHHHHHHHCCC-CCCCEEEEEEEECCC
T ss_conf             56--7988794-92121331478-899837999981777