HHsearch alignment for GI: 254780170 and conserved domain: pfam03401
>pfam03401 Bug Tripartite tricarboxylate transporter family receptor. These probable extra-cytoplasmic solute receptors are strongly overrepresented in several beta-proteobacteria. This family, formerly known as Bug - Bordetella uptake gene (bug) product - is a family of bacterial tripartite tricarboxylate receptors of the extracytoplasmic solute binding receptor-dependent transporter group of families, distinct from the ABC and TRAP-T families. The TctABC system has been characterized in S. typhimurium, and TctC is the extracytoplasmic tricarboxylate-binding receptor which binds the transporters TctA and TctB, two integral membrane proteins. Complete three-component systems are found only in bacteria.
Probab=98.31 E-value=4.7e-06 Score=58.65 Aligned_cols=223 Identities=14% Similarity=0.184 Sum_probs=121.8
Q ss_pred HHHHHHHH---CCCCCEEEEEECCCCC-CHHHHHCCCEE---EEEECCCC--CCC--CHHCCC--CCCCCC--CCCCCEE
Q ss_conf 99999996---7982202599814310-02677439627---99812432--532--011027--843532--2344023
Q gi|254780170|r 64 CRALSSAI---FDDPSKIQYLPLNAKE-RFLALQSKQID---ILSRNTDW--TLL--REISLG--LAFRPI--TYFDGQG 128 (342)
Q Consensus 64 ~raiAaal---~gd~~kVe~v~~~~~~-rf~aL~sG~vD---il~~~~T~--T~~--Rd~~~~--v~Fs~~--~~~dgq~ 128 (342)
T Consensus 2 AR~~a~~l~~~lG~~vvV~N~pGagG~ig~~~v~~a~~DGyTl~~~~~~~~~~~~~~~~~~~~~~~df~pia~~~~~~~~ 81 (274)
T pfam03401 2 ARALAQGMSKQLGQPVIVENKPGAGGIIGADAVAKAAPDGYTILLGSTGLAVAPHLYPNLPYDPIKDFTPVSLLATSPMV 81 (274)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 78999999998699879996698306999999980899998899946789876888434788708876758865016358
Q ss_pred EEEECCCCCCCHHHHC-------C-CCEEEE-ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCH
Q ss_conf 4630211347536417-------8-620343-134269999999986299850787479899999987396029982504
Q gi|254780170|r 129 FIMHKKKGISSVSQLS-------G-ASICVQ-AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDIS 199 (342)
Q Consensus 129 ~lVrk~~~i~s~~dL~-------G-~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s 199 (342)
T Consensus 82 l~v~~dsp~~t~~dli~~ak~~Pg~~~~g~~G~gs~~hl~~~~l~~~~G~~~~~Vpy~G~~~~~~allgG~vd~~~~~~~ 161 (274)
T pfam03401 82 LVVPADSPFKTLQELVAYAKANPGKLTFASAGIGTSNHLAGELLASKAGVQLSHVPYKGSSPALQDLLGGRVDMMIDSLT 161 (274)
T ss_pred EEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCEEEEEEECCH
T ss_conf 89779997568999999998489965873278886318999999997099648834678326689986784459983513
Q ss_pred HHHHHHHHCCCCHHHCCC-----------CCCCC-CC----------CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 799999836780010025-----------64442-37----------101000277757999988774433112123301
Q gi|254780170|r 200 ALYALKLTNDRPSEHVIL-----------PDIIS-KS----------PLAPAIIQGDTEWYNIVSWTHYAMVTAEELGIT 257 (342)
Q Consensus 200 ~La~~~~~~~~p~~~~il-----------~e~is-kE----------Plg~avr~gD~~w~d~V~W~~~ali~Aee~git 257 (342)
T Consensus 162 ~~~~~v----~~G~lr~Lav~~~~R~~~~PdVPT~~E~G~~~~~~~~w~g~~ap~gtP--~~~~~~l~------------ 223 (274)
T pfam03401 162 STAPYI----KAGKLRALAVTSPKRSPQLPDVPTVAELGLKGFEAGVWFGLVAPKGTP--PAVVEKLN------------ 223 (274)
T ss_pred HHHHHH----CCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEEEEEECCCCC--HHHHHHHH------------
T ss_conf 204454----179825999975756754489997688487871478888876349889--99999999------------
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 520898862267177887623588765033379986799999997186999878
Q gi|254780170|r 258 QKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFD 311 (342)
Q Consensus 258 ~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~ 311 (342)
T Consensus 224 ----~a~~~~~~dpe~~~~~~~--~-g~~~~~~~~~e~~~~~~~e~~~~~~l~k 270 (274)
T pfam03401 224 ----DAIKKALKDPEVVERLAN--L-GMEPVPGTPQQLAQFIQAEVKRWGPLIQ 270 (274)
T ss_pred ----HHHHHHHCCHHHHHHHHH--C-CCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ----999999749999999997--7-8957889999999999999999999999