HHsearch results for GI: 254780170 and protein with PDBid: 1gtk_A
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=93.38 E-value=0.42 Score=25.93 Aligned_cols=145 Identities=15% Similarity=0.115 Sum_probs=81.9
Q ss_pred CCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC-CCCCEEEEEECCCCCCCHHHHC-CCCEEEEECCCHHHHHHHHH
Q ss_conf 002677439627998124325320110278435322-3440234630211347536417-86203431342699999999
Q gi|254780170|r 87 ERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT-YFDGQGFIMHKKKGISSVSQLS-GASICVQAGTTTELTLADYF 164 (342)
Q Consensus 87 ~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~-~~dgq~~lVrk~~~i~s~~dL~-G~~I~v~~GTT~e~~l~~~~ 164 (342)
+.-.+|.+|++|+.+.++---+... ..++..+.+. =-|..-+++.+ ...++.+|. |.+|| |++-.- +..+
T Consensus 65 ele~aLl~g~iDiAVHSlKDlP~~~-~~gl~i~av~~R~d~rD~li~~--~~~~l~~lp~g~~IG----TsS~RR-~aql 136 (313)
T 1gtk_A 65 ELEVALLENRADIAVHSMKDVPVEF-PQGLGLVTICEREDPRDAFVSN--NYDSLDALPAGSIVG----TSSLRR-QCQL 136 (313)
T ss_dssp HHHHHHHTTSCSEEEEEGGGSCSCC-CTTEEEEEECCCCCCCEEEECS--SCSSGGGCCTTCEEE----CCCHHH-HHHH
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCC-CCCCEEEEEECCCCHHHHHCCC--CCCCHHHCCCCCEEE----CCCHHH-HHHH
T ss_conf 9999986387648975136577546-9985699995678888875037--635562489989883----188889-9999
Q ss_pred HHCCCCCCEEEECC-HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCC-CCCC----CCCCEEEECCCCCHHHH
Q ss_conf 86299850787479-899999987396029982504799999836780010025-6444----23710100027775799
Q gi|254780170|r 165 KAHNMKYHPIVFER-VEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVIL-PDII----SKSPLAPAIIQGDTEWY 238 (342)
Q Consensus 165 ~~~~~~~~~v~~~~-~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il-~e~i----skEPlg~avr~gD~~w~ 238 (342)
+...++.+++.+.. .+.-+..|.+|++||++--...| .|..+...- +.++ ++.+ ..--+|+-.|++|++..
T Consensus 137 ~~~~pdl~i~~iRGNVdTRl~KL~~g~~DaiILA~AGl--~RLgl~~~~-~~~l~~~~~~PA~gQGaiave~r~~d~~~~ 213 (313)
T 1gtk_A 137 AERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGL--KRLGLESRI-RAALPPEISLPAVGQGAVGIECRLDDSRTR 213 (313)
T ss_dssp HHHCTTSEEECCCSCHHHHHHHHHTTSCSEEEEEHHHH--HHTTCGGGC-SEECCTTTSCCCTTTTCEEEEEETTCHHHH
T ss_pred HHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEEECCHH--CCCCCCCCC-EEECCCHHCCCCCCCCEEEEEECCCCHHHH
T ss_conf 98689993775647699999997678977898640012--101211330-486160204664100125665517858899
Q ss_pred HHHH
Q ss_conf 9988
Q gi|254780170|r 239 NIVS 242 (342)
Q Consensus 239 d~V~ 242 (342)
+++.
T Consensus 214 ~~l~ 217 (313)
T 1gtk_A 214 ELLA 217 (313)
T ss_dssp HHHG
T ss_pred HHHH
T ss_conf 9998