HHsearch results for GI: 254780170 and protein with PDBid: 1gtk_A

>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=93.38  E-value=0.42  Score=25.93  Aligned_cols=145  Identities=15%  Similarity=0.115  Sum_probs=81.9

Q ss_pred             CCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC-CCCCEEEEEECCCCCCCHHHHC-CCCEEEEECCCHHHHHHHHH
Q ss_conf             002677439627998124325320110278435322-3440234630211347536417-86203431342699999999
Q gi|254780170|r   87 ERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT-YFDGQGFIMHKKKGISSVSQLS-GASICVQAGTTTELTLADYF  164 (342)
Q Consensus        87 ~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~-~~dgq~~lVrk~~~i~s~~dL~-G~~I~v~~GTT~e~~l~~~~  164 (342)
                      +.-.+|.+|++|+.+.++---+... ..++..+.+. =-|..-+++.+  ...++.+|. |.+||    |++-.- +..+
T Consensus        65 ele~aLl~g~iDiAVHSlKDlP~~~-~~gl~i~av~~R~d~rD~li~~--~~~~l~~lp~g~~IG----TsS~RR-~aql  136 (313)
T 1gtk_A           65 ELEVALLENRADIAVHSMKDVPVEF-PQGLGLVTICEREDPRDAFVSN--NYDSLDALPAGSIVG----TSSLRR-QCQL  136 (313)
T ss_dssp             HHHHHHHTTSCSEEEEEGGGSCSCC-CTTEEEEEECCCCCCCEEEECS--SCSSGGGCCTTCEEE----CCCHHH-HHHH
T ss_pred             HHHHHHHCCCCCEEEEECCCCCCCC-CCCCEEEEEECCCCHHHHHCCC--CCCCHHHCCCCCEEE----CCCHHH-HHHH
T ss_conf             9999986387648975136577546-9985699995678888875037--635562489989883----188889-9999


Q ss_pred             HHCCCCCCEEEECC-HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCC-CCCC----CCCCEEEECCCCCHHHH
Q ss_conf             86299850787479-899999987396029982504799999836780010025-6444----23710100027775799
Q gi|254780170|r  165 KAHNMKYHPIVFER-VEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVIL-PDII----SKSPLAPAIIQGDTEWY  238 (342)
Q Consensus       165 ~~~~~~~~~v~~~~-~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il-~e~i----skEPlg~avr~gD~~w~  238 (342)
                      +...++.+++.+.. .+.-+..|.+|++||++--...|  .|..+...- +.++ ++.+    ..--+|+-.|++|++..
T Consensus       137 ~~~~pdl~i~~iRGNVdTRl~KL~~g~~DaiILA~AGl--~RLgl~~~~-~~~l~~~~~~PA~gQGaiave~r~~d~~~~  213 (313)
T 1gtk_A          137 AERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGL--KRLGLESRI-RAALPPEISLPAVGQGAVGIECRLDDSRTR  213 (313)
T ss_dssp             HHHCTTSEEECCCSCHHHHHHHHHTTSCSEEEEEHHHH--HHTTCGGGC-SEECCTTTSCCCTTTTCEEEEEETTCHHHH
T ss_pred             HHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEEECCHH--CCCCCCCCC-EEECCCHHCCCCCCCCEEEEEECCCCHHHH
T ss_conf             98689993775647699999997678977898640012--101211330-486160204664100125665517858899


Q ss_pred             HHHH
Q ss_conf             9988
Q gi|254780170|r  239 NIVS  242 (342)
Q Consensus       239 d~V~  242 (342)
                      +++.
T Consensus       214 ~~l~  217 (313)
T 1gtk_A          214 ELLA  217 (313)
T ss_dssp             HHHG
T ss_pred             HHHH
T ss_conf             9998