HHsearch results for GI: 254780170 and protein with PDBid: 1ixc_A
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=94.87 E-value=0.21 Score=27.82 Aligned_cols=185 Identities=11% Similarity=0.037 Sum_probs=114.3
Q ss_pred HHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 85794999871789883068898988015099999999996798220259981431002677439627998124325320
Q gi|254780170|r 31 KKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLR 110 (342)
Q Consensus 31 k~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~R 110 (342)
+.+|.+++|+.....- .+-..+..++.+.- ...+++++...+.+.+..|.+|++|+.+.......
T Consensus 88 ~~~~~i~~~~~~~~~~-----------~~l~~~~~~~~~~~--p~v~~~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~-- 152 (294)
T 1ixc_A 88 GDVGELSVAYFGTPIY-----------RSLPLLLRAFLTST--PTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRH-- 152 (294)
T ss_dssp TCCEEEEEEECSGGGG-----------THHHHHHHHHHHHC--TTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCCC--
T ss_pred CCCCEEEEECCCCHHH-----------HHHHHHHHHHHHCC--CCCCCCCEEECCHHCCCCCCCCCEEEEEECCCCCC--
T ss_conf 6652378732530799-----------99999999975318--76444304520310032114796468885167778--
Q ss_pred HHCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEEEE---ECCCHHHHHHHHHHHCCCCCCEE-EECCHHH
Q ss_conf 11027843532234402346302113-----475364178620343---13426999999998629985078-7479899
Q gi|254780170|r 111 EISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASICVQ---AGTTTELTLADYFKAHNMKYHPI-VFERVEE 181 (342)
Q Consensus 111 d~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~v~---~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~ 181 (342)
.++.+. +.+.+.-.++++++.. --+++|+.+...... .+++....+.++++..+...+++ .+++...
T Consensus 153 ---~~l~~~-~l~~~~~~~~~~~~h~~~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 228 (294)
T 1ixc_A 153 ---PGIEIV-NIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATA 228 (294)
T ss_dssp ---TTEEEE-EEEEEEEEEEEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHH
T ss_pred ---CCCCCC-CCCCCEEEEEEECCCHHHCCCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEECCHHH
T ss_conf ---754222-0135207999827307653999999998189979963876751467777765324547744688657999
Q ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCC--CCCCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 99998739602998250479999983678001002--564442371010002777579999887
Q gi|254780170|r 182 IDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVI--LPDIISKSPLAPAIIQGDTEWYNIVSW 243 (342)
Q Consensus 182 a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~i--l~e~iskEPlg~avr~gD~~w~d~V~W 243 (342)
+.+...+|..-+++.+. ++ ....+ +..+ +++.--.-++..+.+++.. ...++|
T Consensus 229 ~~~lv~~g~gia~lp~~--~~----~~~~~-~~~~~~l~~~~~~~~~~li~~~~~~--~p~~~~ 283 (294)
T 1ixc_A 229 ALALTMAGAASSIVPAS--VA----AIRWP-DIAFARIVGTRVKVPISCIFRKEKQ--PPILAR 283 (294)
T ss_dssp HHHHHHTTSCBEEEEHH--HH----TSCCT-TEEEEEECCTTCEEEEEEEEESSSC--CHHHHH
T ss_pred HHHHHHHCCEEEECCHH--HH----HHHCC-CEEEEECCCCCCEEEEEEEEECCCC--CHHHHH
T ss_conf 99999949979981088--98----55229-8599977898860389999979999--989999