HHsearch results for GI: 254780170 and protein with PDBid: 1mqi_A
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.93 E-value=8.5e-26 Score=182.35 Aligned_cols=208 Identities=15% Similarity=0.102 Sum_probs=152.2
Q ss_pred CCEEEEEEECCCCCCEEECCC-------CCEEEEHHHHHHHHHHHHCCCCCEEEEEECC-------------CCCCHHHH
Q ss_conf 794999871789883068898-------9880150999999999967982202599814-------------31002677
Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKAN-------GDWKGFDVDFCRALSSAIFDDPSKIQYLPLN-------------AKERFLAL 92 (342)
Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~-------G~~~GfDVDl~raiAaal~gd~~kVe~v~~~-------------~~~rf~aL 92 (342)
.++|+|++-. .|||.|.+.+ |+++|||||++++||+.++- +++|+++. |+.++++|
T Consensus 3 ~~t~~v~t~~-~pPf~~~~~~~~~~~~n~~~~G~~vDl~~~ia~~lg~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (263)
T 1mqi_A 3 NKTVVVTTIL-ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGF---KYKLTIVGDGKYGARDADTKIWNGMVGEL 78 (263)
T ss_dssp CCCEEEEECC-BTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTC---CEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred CEEEEEEECC-CCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCC---CEEEEECCCCCCCEECCCCCCHHHHHHHH
T ss_conf 7399999786-5996667368665478897688689999999998599---77999877876321313567778999865
Q ss_pred HCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCC--
Q ss_conf 439627998124325320110278435322344023463021134753641786203431342699999999862998--
Q gi|254780170|r 93 QSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMK-- 170 (342)
Q Consensus 93 ~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~-- 170 (342)
.+|++|++++++|+|++|+. .++||.|||.+++.+++++++.+.+..||++++.+.. |++......+++...+..
T Consensus 79 ~~g~~D~~~~~~t~t~eR~~--~~~FS~py~~~~~~~~~~~~~~~~~~~dl~~~~~~~~-g~~~~~~~~~~~~~~~~~~~ 155 (263)
T 1mqi_A 79 VYGKADIAIAPLTITLVREE--VIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIAY-GTLDSGSTKEFFRRSKIAVF 155 (263)
T ss_dssp HTTSCSEECSSCBCCHHHHT--TEEECSCSEEECEEEEEETTCSCCSHHHHHTCSSSEE-ECBSSSHHHHHHHHCCSHHH
T ss_pred HHCCCCEEEECCEECHHHHH--HCCCCCCEECCCEEEEEECCCCCCCHHHHHCCCCEEE-EEECHHHHHHHHHHCCCCHH
T ss_conf 40232889875460676752--0454576452652898631553234777606723699-88617799999986322046
Q ss_pred ----------CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf ----------5078747989999998739602998250479999983678001002564442371010002777579999
Q gi|254780170|r 171 ----------YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNI 240 (342)
Q Consensus 171 ----------~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~ 240 (342)
...+...+..+.+..+.+++.++.+.+.+....... ..+|.+...+++.++.+|+|+++|++++ |++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ia~~k~~~-L~~~ 233 (263)
T 1mqi_A 156 DKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIE-QRKPCDTMKVGGNLDSKGYGIATPKGSS-LGNA 233 (263)
T ss_dssp HHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTSEEEEEEHHHHHHHT-TSTTCCEEEESCCSCCEEECCEEETTCT-THHH
T ss_pred HHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCEEEECCHHHHHHHH-HCCCCCEEEECCCCCCCEEEEEEECCHH-HHHH
T ss_conf 6789987515772574260899999985387546633489999999-7299876982456776138999908809-9999
Q ss_pred HHHHHHHHH
Q ss_conf 887744331
Q gi|254780170|r 241 VSWTHYAMV 249 (342)
Q Consensus 241 V~W~~~ali 249 (342)
++=.+..|.
T Consensus 234 in~aL~~l~ 242 (263)
T 1mqi_A 234 VNLAVLKLN 242 (263)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999