HHsearch results for GI: 254780170 and protein with PDBid: 1pb7_A
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=100.00 E-value=1.6e-33 Score=231.30 Aligned_cols=218 Identities=13% Similarity=0.104 Sum_probs=176.9
Q ss_pred CCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-----------------CC
Q ss_conf 4216899985794999871789883068898988015099999999996798220259981-----------------43
Q gi|254780170|r 23 NASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-----------------NA 85 (342)
Q Consensus 23 ~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-----------------~~ 85 (342)
...+++.++.++++++|+...+|||++.+++|+|+||||||+++||+.++ .+++|+++ +|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~G~~vDl~~~ia~~lg---~~~e~~~~~~~~~g~~~~~~~~~~~~w 106 (292)
T 1pb7_A 30 EEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMN---FTYEVHLVADGKFGTQERVNNSNKKEW 106 (292)
T ss_dssp CCBCTTSCBCCCEEEEEEC--------CEEEEEEESHHHHHHHHHHHHHT---CCEEEEECTTCCCCCEEECTTSSCEEE
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf 44434433457428951168888633127999769984999999999839---947999866765454333465566888
Q ss_pred CCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHC--CC----CEEEEECCCHHHH
Q ss_conf 10026774396279981243253201102784353223440234630211347536417--86----2034313426999
Q gi|254780170|r 86 KERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLS--GA----SICVQAGTTTELT 159 (342)
Q Consensus 86 ~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~--G~----~I~v~~GTT~e~~ 159 (342)
++++++|++|++|++++++++|++|+ ..++|+.||+++++.++||+++.+....+++ ++ .+++..+++.+..
T Consensus 107 ~~~~~~l~~g~~Di~~~~~~~t~eR~--~~~~Fs~Py~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 184 (292)
T 1pb7_A 107 NGMMGELLSGQADMIVAPLTINNERA--QYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIY 184 (292)
T ss_dssp CHHHHHHHHTSCSEECSSCBCCHHHH--TTEEECSCSEEEEEEEEEETTCCCCSTTCHHHHSCBTTBCEECBTTSHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHH--HHCCCCCEECCCCEEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCHHHHHH
T ss_conf 89999986797679986687998999--4266651012477689998688656453033068633269978664799999
Q ss_pred HHHHHH--HCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHH
Q ss_conf 999998--629985078747989999998739602998250479999983678001002564442371010002777579
Q gi|254780170|r 160 LADYFK--AHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEW 237 (342)
Q Consensus 160 l~~~~~--~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w 237 (342)
++.... ......+++.|++..+++.++.+|++||+..|...+...... + .+++++++.++.+|+++++++|+ .|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~da~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~a~~k~~-~l 260 (292)
T 1pb7_A 185 FRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQ--K-CDLVTTGELFFRSGFGIGMRKDS-PW 260 (292)
T ss_dssp HHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHH--C-TTEEECSSCSEEEEECCEEETTC-SS
T ss_pred HHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEEECCHHHHHHHHHH--C-CCEEEECCCCCCCEEEEEEECCH-HH
T ss_conf 98646665306774699828899999998779735996258999999986--8-98799377666612899990875-99
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999887744331
Q gi|254780170|r 238 YNIVSWTHYAMV 249 (342)
Q Consensus 238 ~d~V~W~~~ali 249 (342)
.+.++..+..|.
T Consensus 261 ~~~in~al~~l~ 272 (292)
T 1pb7_A 261 KQNVSLSILKSH 272 (292)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999