HHsearch results for GI: 254780170 and protein with PDBid: 1pb7_A

>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=100.00  E-value=1.6e-33  Score=231.30  Aligned_cols=218  Identities=13%  Similarity=0.104  Sum_probs=176.9

Q ss_pred             CCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-----------------CC
Q ss_conf             4216899985794999871789883068898988015099999999996798220259981-----------------43
Q gi|254780170|r   23 NASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-----------------NA   85 (342)
Q Consensus        23 ~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-----------------~~   85 (342)
                      ...+++.++.++++++|+...+|||++.+++|+|+||||||+++||+.++   .+++|+++                 +|
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~G~~vDl~~~ia~~lg---~~~e~~~~~~~~~g~~~~~~~~~~~~w  106 (292)
T 1pb7_A           30 EEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMN---FTYEVHLVADGKFGTQERVNNSNKKEW  106 (292)
T ss_dssp             CCBCTTSCBCCCEEEEEEC--------CEEEEEEESHHHHHHHHHHHHHT---CCEEEEECTTCCCCCEEECTTSSCEEE
T ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf             44434433457428951168888633127999769984999999999839---947999866765454333465566888


Q ss_pred             CCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHC--CC----CEEEEECCCHHHH
Q ss_conf             10026774396279981243253201102784353223440234630211347536417--86----2034313426999
Q gi|254780170|r   86 KERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLS--GA----SICVQAGTTTELT  159 (342)
Q Consensus        86 ~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~--G~----~I~v~~GTT~e~~  159 (342)
                      ++++++|++|++|++++++++|++|+  ..++|+.||+++++.++||+++.+....+++  ++    .+++..+++.+..
T Consensus       107 ~~~~~~l~~g~~Di~~~~~~~t~eR~--~~~~Fs~Py~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  184 (292)
T 1pb7_A          107 NGMMGELLSGQADMIVAPLTINNERA--QYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIY  184 (292)
T ss_dssp             CHHHHHHHHTSCSEECSSCBCCHHHH--TTEEECSCSEEEEEEEEEETTCCCCSTTCHHHHSCBTTBCEECBTTSHHHHH
T ss_pred             HHHHHHHHCCCEEEEEECCCCCHHHH--HHCCCCCEECCCCEEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCHHHHHH
T ss_conf             89999986797679986687998999--4266651012477689998688656453033068633269978664799999


Q ss_pred             HHHHHH--HCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHH
Q ss_conf             999998--629985078747989999998739602998250479999983678001002564442371010002777579
Q gi|254780170|r  160 LADYFK--AHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEW  237 (342)
Q Consensus       160 l~~~~~--~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w  237 (342)
                      ++....  ......+++.|++..+++.++.+|++||+..|...+......  + .+++++++.++.+|+++++++|+ .|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~da~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~a~~k~~-~l  260 (292)
T 1pb7_A          185 FRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQ--K-CDLVTTGELFFRSGFGIGMRKDS-PW  260 (292)
T ss_dssp             HHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHH--C-TTEEECSSCSEEEEECCEEETTC-SS
T ss_pred             HHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEEECCHHHHHHHHHH--C-CCEEEECCCCCCCEEEEEEECCH-HH
T ss_conf             98646665306774699828899999998779735996258999999986--8-98799377666612899990875-99


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999887744331
Q gi|254780170|r  238 YNIVSWTHYAMV  249 (342)
Q Consensus       238 ~d~V~W~~~ali  249 (342)
                      .+.++..+..|.
T Consensus       261 ~~~in~al~~l~  272 (292)
T 1pb7_A          261 KQNVSLSILKSH  272 (292)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999