HHsearch results for GI: 254780170 and protein with PDBid: 1twy_A
>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1
Probab=95.74 E-value=0.11 Score=29.66 Aligned_cols=128 Identities=14% Similarity=0.147 Sum_probs=71.3
Q ss_pred HHHHHHHHHHCCC--CCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC----
Q ss_conf 9999999996798--2202599814310026774396279981243253201102784353223440234630211----
Q gi|254780170|r 62 DFCRALSSAIFDD--PSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKK---- 135 (342)
Q Consensus 62 Dl~raiAaal~gd--~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~---- 135 (342)
.+.++++++--.. ..+|++....+..-+..|.+|++|+.+..-.++.+ +....+. ..+.-+++..++|.++.
T Consensus 40 ~l~~~l~~~f~~~~P~~~v~~~~~gSg~~~~~l~~g~~di~~~s~~~~~~-e~~~~~~-~~~ia~~~~~ivv~~~n~~~~ 117 (290)
T 1twy_A 40 RIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTES-EAQNTLH-TFTLAFDGLAIVVNQANPVTN 117 (290)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEEEESSCCCTT-TCCTTCE-EEEEEEEEEEEEECTTCCCCE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHH-HHHCCCE-EEEEEECCEEEEECCCCCCCC
T ss_conf 99999999999888895799971686799999982686412255400134-6634505-677886025764057785234
Q ss_pred ------------CCCCHHHHCC--CCEEEE---ECCCHHHHHHHHHHH---------CCCCCCEEEECCHHHHHHHHHCC
Q ss_conf ------------3475364178--620343---134269999999986---------29985078747989999998739
Q gi|254780170|r 136 ------------GISSVSQLSG--ASICVQ---AGTTTELTLADYFKA---------HNMKYHPIVFERVEEIDAAYRAH 189 (342)
Q Consensus 136 ------------~i~s~~dL~G--~~I~v~---~GTT~e~~l~~~~~~---------~~~~~~~v~~~~~~~a~~al~~G 189 (342)
.|+.|+|+.| ..|.+. .+|.+.....++... ....-.....++.......+..+
T Consensus 118 ls~~~L~~i~~g~it~W~~~~~~~~~i~~~~r~~~Sgt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~~ 197 (290)
T 1twy_A 118 LTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVSDVAPTALVVNSNSMMKTLVNHN 197 (290)
T ss_dssp ECHHHHHHHHHTSCCBGGGGTSCSCBCEEEEECTTCHHHHHHHHHHTCEEEETTEEEECSCTTSEEESSHHHHHHHHHHC
T ss_pred CCHHHHHHHHCCCCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCC
T ss_conf 58989856442876753104899884178527999727999999961044212121023577127943848999999648
Q ss_pred CE
Q ss_conf 60
Q gi|254780170|r 190 RC 191 (342)
Q Consensus 190 r~ 191 (342)
.-
T Consensus 198 ~~ 199 (290)
T 1twy_A 198 TQ 199 (290)
T ss_dssp TT
T ss_pred CC
T ss_conf 88