HHsearch results for GI: 254780170 and protein with PDBid: 2pfz_A
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=97.49 E-value=0.0021 Score=40.43 Aligned_cols=157 Identities=16% Similarity=0.018 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCC----------
Q ss_conf 099999999996798220259981----431002677439627998124325320110278435322344----------
Q gi|254780170|r 60 DVDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFD---------- 125 (342)
Q Consensus 60 DVDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~d---------- 125 (342)
--++++.|.++-.|. .+|++.+. ...+.+.++++|.+|+..........+.....+ |..|++++
T Consensus 19 ~~~fa~~V~e~t~G~-v~i~i~~~g~L~~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~~-~~lPf~~~~~~~~~~~~~ 96 (301)
T 2pfz_A 19 LTQFVKDVDSLSGGK-LKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYEL-DGLPFLATGYDASFKLYQ 96 (301)
T ss_dssp HHHHHHHHHHHHTTS-CEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTG-GGSTTSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEE-EECCCCCCCHHHHHHHHH
T ss_conf 999999999875991-999996698678869999999769877100022464541754036-635767687688999863
Q ss_pred -----------------------CEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHH
Q ss_conf -----------------------023463021134753641786203431342699999999862998507874798999
Q gi|254780170|r 126 -----------------------GQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEI 182 (342)
Q Consensus 126 -----------------------gq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a 182 (342)
+...+. ....|++++||+|+||-+. |.+ ..++++.-| ..++..+ ..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~pi~~~~DlkG~kiR~~-~~~----~~~~~~~~G--a~pv~~~-~~ev 167 (301)
T 2pfz_A 97 AQKPFLEKKLASQGMMLLYSVAWPPQGIF-ANRDIKQVSDMKGLKWRAY-SPV----TAKIAELVG--AQPVTVQ-QAEL 167 (301)
T ss_dssp HHHHHHHHHHHTTTEEEEEEEECCCCEEE-ESSCCSSGGGGTTCEEEES-SHH----HHHHHHHHT--CEEEECC-GGGH
T ss_pred HHHHHHHHHHHHCCEEEEEECCCCCEEEE-CCCCCCCHHHHCCCEEEEC-CHH----HHHHHHHCC--CCCCCCC-CHHH
T ss_conf 04899998764232579875277622224-2889999588679858716-824----999999818--8744565-4068
Q ss_pred HHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEC
Q ss_conf 999873960299825047999998367800100256444237101000
Q gi|254780170|r 183 DAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAI 230 (342)
Q Consensus 183 ~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~av 230 (342)
+.+|++|.+|+..+..+.....+. ..-..|..... ..-.+..+++
T Consensus 168 ~~aLq~G~vDg~~~~~~~~~~~~~--~e~~~~~~~~~-~~~~~~~~~~ 212 (301)
T 2pfz_A 168 AQAMATGVIDSYMSSGSTGFDTKT--YEYIKKFYDTE-AWLPKNAVLV 212 (301)
T ss_dssp HHHHHTTSCSEEEECHHHHHHTTG--GGTCCEEECCC-CCCCEEEEEE
T ss_pred HHHHHHCCCHHHCCCHHHHHHCCC--CEEEEEEEECC-CCCCHHHHHC
T ss_conf 999982531020057044431156--14420487358-7464144350