HHsearch results for GI: 254780170 and protein with PDBid: 2pvu_A
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, thermophilic bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=100.00 E-value=2e-34 Score=236.96 Aligned_cols=216 Identities=18% Similarity=0.134 Sum_probs=182.1
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECC
Q ss_conf 16899985794999871789883068898988015099999999996798220259981431002677439627998124
Q gi|254780170|r 25 SILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNT 104 (342)
Q Consensus 25 ~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~ 104 (342)
+..+.+.++++|+||++.++|||+|.+ +|+++||++|++++||+.++ .+++|++++|..++..|++|++|++++++
T Consensus 33 ~~~~~~~~~~~l~Vg~~~~~~P~~~~~-~G~~~G~~vDl~~~ia~~lg---~~~~~~~~~~~~~~~~l~~g~~d~~~~~~ 108 (272)
T 2pvu_A 33 SGGDGGATKKKVVVGTDAAFAPFEYMQ-KGKIVGFDVDLLDAVMKAAG---LDYELKNIGWDPLFASLQSKEVDMGISGI 108 (272)
T ss_dssp -----CCCCCCEEEEECCCBTTTBEEE-TTEEESHHHHHHHHHHHHHT---CCEEEEECCHHHHHHHHHHTSSSEECSSC
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEE-CCEEEEHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEECC
T ss_conf 666555558989999899878935856-99778819999999999809---96599977989999999759966895145
Q ss_pred CCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHH
Q ss_conf 32532011027843532234402346302113475364178620343134269999999986299850787479899999
Q gi|254780170|r 105 DWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDA 184 (342)
Q Consensus 105 T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~ 184 (342)
++|++|+. .++|+.|||+++..+++|+++.+++..+|.|++|+++.|++.+..+..++. ...+++.+++..+++.
T Consensus 109 ~~t~~R~~--~~~~s~p~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~g~~~~~~~~~~~~---~~~~i~~~~~~~~~~~ 183 (272)
T 2pvu_A 109 TITDERKQ--SYDFSDPYFEATQVILVKQGSPVKNALDLKGKTIGVQNATTGQEAAEKLFG---KGPHIKKFETTVVAIM 183 (272)
T ss_dssp BCCHHHHT--TEEECSCCEEECEEEEEETTCCCCSGGGGTTSCEEEETTSHHHHHHHHHHC---SSTTEEEESSHHHHHH
T ss_pred CCCHHHHC--CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHC---CCCEEEECCCHHHHHH
T ss_conf 57877741--055674630563789974487678858867985776257639999998734---4873430420899999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9873960299825047999998367800100256--444237101000277757999988774433112
Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTA 251 (342)
Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~~w~d~V~W~~~ali~A 251 (342)
+|.+||+|+++.|...+.......++ ....++. ..++.+++++++++ |++|.+.++..+..|.+-
T Consensus 184 ~l~~GrvD~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~~ln~al~~~~~d 250 (272)
T 2pvu_A 184 ELLNGGVDAVITDNAVANEYVKNNPN-KKLQVIEDPKNFASEYYGMIFPK-NSELKAKVDEALKNVINS 250 (272)
T ss_dssp HHHTTSCSEEEEEHHHHHHHHHHCGG-GCEEEECCTTTSCCEEECCEEET-TCTTHHHHHHHHHHHHHT
T ss_pred HHHCCCCCEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHC
T ss_conf 99859811652665989999985899-87699516766676159999789-989999999999999969