HHsearch results for GI: 254780170 and protein with PDBid: 2rc8_A

>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, alternative splicing, calcium, cell junction, coiled coil, glycoprotein, ION transport; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.93  E-value=9.3e-27  Score=188.44  Aligned_cols=189  Identities=10%  Similarity=0.028  Sum_probs=141.6

Q ss_pred             CCEEEEHHHHHHHHHHHHCCCCCEEEEE-----------ECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC
Q ss_conf             9880150999999999967982202599-----------81431002677439627998124325320110278435322
Q gi|254780170|r   54 GDWKGFDVDFCRALSSAIFDDPSKIQYL-----------PLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT  122 (342)
Q Consensus        54 G~~~GfDVDl~raiAaal~gd~~kVe~v-----------~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~  122 (342)
                      +.+.||||||+++||+.++   .+++|+           +.+|+.++++|++|++|++++++|+|.+|+  ..++|+.||
T Consensus        66 ~~~~Gf~iDL~~~ia~~lg---~~~e~~~v~d~~~~~~~~~~w~~~i~~l~~g~~Di~i~~~t~t~eR~--~~v~Fs~Py  140 (294)
T 2rc8_A           66 KCCYGYCIDLLEQLAEDMN---FDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARS--QVIDFTSPF  140 (294)
T ss_dssp             EEEESHHHHHHHHHHHHHT---EEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHH--TTSEECSCS
T ss_pred             CCCEEEHHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHH--HHCEECCCE
T ss_conf             7738568999999999819---96799980688634536788899999997799659953013687688--531741204


Q ss_pred             CCCCEEEEEECC-CCCCCHHH--HCCCC----EEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC--CEEE
Q ss_conf             344023463021-13475364--17862----034313426999999998629985078747989999998739--6029
Q gi|254780170|r  123 YFDGQGFIMHKK-KGISSVSQ--LSGAS----ICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAH--RCDA  193 (342)
Q Consensus       123 ~~dgq~~lVrk~-~~i~s~~d--L~G~~----I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~G--r~DA  193 (342)
                      +..++.++++++ ..+.+..|  |.|++    +|+..|++.+..+.+.+.......+...+++.+++++++..|  |+||
T Consensus       141 ~~~~~~i~~~~~~~~~~~~~d~~l~~~~~g~~~Gtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~g~vDa  220 (294)
T 2rc8_A          141 FSTSLGILVRTRGTELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDA  220 (294)
T ss_dssp             EEEEEEEEEETTSCCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSE
T ss_pred             ECCCCEEEEECCCCCCCCCCCHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCEEEE
T ss_conf             12660478745887544322124047733238996664289999886404333103553038779999876427815899


Q ss_pred             EEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             98250479999983678001002564442371010002777579999887744331
Q gi|254780170|r  194 YTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMV  249 (342)
Q Consensus       194 ~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali  249 (342)
                      ++.|.+.+.....+.++ .+..++++.++.+++|+++++|+ .|++.++=.+..|.
T Consensus       221 ~i~d~~~~~~~~~~~~~-~~l~~v~~~~~~~~~gia~~k~s-~l~~~in~~l~~l~  274 (294)
T 2rc8_A          221 FIMDKALLDYEVSIDAD-CKLLTVGKPFAIEGYGIGLPPNS-PLTSNISELISQYK  274 (294)
T ss_dssp             EEEEHHHHHHHHHTCSS-SCEEECSCCEEEEEECCEECTTC-THHHHHHHHHHHHH
T ss_pred             EEECHHHHHHHHHHCCC-CCEEEECCCCCCCEEEEEECCCH-HHHHHHHHHHHHHH
T ss_conf             98236889999986899-86899068777621899980984-99999999999999