HHsearch results for GI: 254780170 and protein with PDBid: 2rc8_A
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, alternative splicing, calcium, cell junction, coiled coil, glycoprotein, ION transport; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.93 E-value=9.3e-27 Score=188.44 Aligned_cols=189 Identities=10% Similarity=0.028 Sum_probs=141.6
Q ss_pred CCEEEEHHHHHHHHHHHHCCCCCEEEEE-----------ECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC
Q ss_conf 9880150999999999967982202599-----------81431002677439627998124325320110278435322
Q gi|254780170|r 54 GDWKGFDVDFCRALSSAIFDDPSKIQYL-----------PLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT 122 (342)
Q Consensus 54 G~~~GfDVDl~raiAaal~gd~~kVe~v-----------~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~ 122 (342)
+.+.||||||+++||+.++ .+++|+ +.+|+.++++|++|++|++++++|+|.+|+ ..++|+.||
T Consensus 66 ~~~~Gf~iDL~~~ia~~lg---~~~e~~~v~d~~~~~~~~~~w~~~i~~l~~g~~Di~i~~~t~t~eR~--~~v~Fs~Py 140 (294)
T 2rc8_A 66 KCCYGYCIDLLEQLAEDMN---FDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARS--QVIDFTSPF 140 (294)
T ss_dssp EEEESHHHHHHHHHHHHHT---EEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHH--TTSEECSCS
T ss_pred CCCEEEHHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHH--HHCEECCCE
T ss_conf 7738568999999999819---96799980688634536788899999997799659953013687688--531741204
Q ss_pred CCCCEEEEEECC-CCCCCHHH--HCCCC----EEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC--CEEE
Q ss_conf 344023463021-13475364--17862----034313426999999998629985078747989999998739--6029
Q gi|254780170|r 123 YFDGQGFIMHKK-KGISSVSQ--LSGAS----ICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAH--RCDA 193 (342)
Q Consensus 123 ~~dgq~~lVrk~-~~i~s~~d--L~G~~----I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~G--r~DA 193 (342)
+..++.++++++ ..+.+..| |.|++ +|+..|++.+..+.+.+.......+...+++.+++++++..| |+||
T Consensus 141 ~~~~~~i~~~~~~~~~~~~~d~~l~~~~~g~~~Gtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~g~vDa 220 (294)
T 2rc8_A 141 FSTSLGILVRTRGTELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDA 220 (294)
T ss_dssp EEEEEEEEEETTSCCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSE
T ss_pred ECCCCEEEEECCCCCCCCCCCHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCEEEE
T ss_conf 12660478745887544322124047733238996664289999886404333103553038779999876427815899
Q ss_pred EEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 98250479999983678001002564442371010002777579999887744331
Q gi|254780170|r 194 YTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMV 249 (342)
Q Consensus 194 ~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali 249 (342)
++.|.+.+.....+.++ .+..++++.++.+++|+++++|+ .|++.++=.+..|.
T Consensus 221 ~i~d~~~~~~~~~~~~~-~~l~~v~~~~~~~~~gia~~k~s-~l~~~in~~l~~l~ 274 (294)
T 2rc8_A 221 FIMDKALLDYEVSIDAD-CKLLTVGKPFAIEGYGIGLPPNS-PLTSNISELISQYK 274 (294)
T ss_dssp EEEEHHHHHHHHHTCSS-SCEEECSCCEEEEEECCEECTTC-THHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHCCC-CCEEEECCCCCCCEEEEEECCCH-HHHHHHHHHHHHHH
T ss_conf 98236889999986899-86899068777621899980984-99999999999999