HHsearch results for GI: 254780170 and protein with PDBid: 2v25_A
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=100.00 E-value=1.4e-43 Score=295.00 Aligned_cols=240 Identities=25% Similarity=0.323 Sum_probs=209.8
Q ss_pred CHHHHHHHHHHHHH---HHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECC-CCCEEEEHHHHHHHHHHHHCCCCC
Q ss_conf 91389999999999---99840124421689998579499987178988306889-898801509999999999679822
Q gi|254780170|r 1 MYKDFFVSILCLII---LFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKA-NGDWKGFDVDFCRALSSAIFDDPS 76 (342)
Q Consensus 1 M~K~~l~~~l~l~~---~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~-~G~~~GfDVDl~raiAaal~gd~~ 76 (342)
|+|.++..+ ++++ +.+.++.++.++|++|+++|+|+||+..++|||+|.|. +|++.||++|+++++|..+++...
T Consensus 3 ~~k~l~~~~-~~~l~~~~~~~~~~~a~~~l~~i~~~~~l~V~~~~~~pP~~~~d~~~g~~~G~~~di~~~ia~~~~~~~~ 81 (259)
T 2v25_A 3 FRKSLLKLA-VFALGACVAFSNANAAEGKLESIKSKGQLIVGVKNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDK 81 (259)
T ss_dssp ---------------------------CHHHHHHHHTCEEEEECSEETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHCCCEEEEEECCCCCCCEEEECCCCEEEEEEEHHHHHHHHHHCCCCC
T ss_conf 379999999-9999999872331113265999960998999982897883246678984888986476568887278875
Q ss_pred EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCH
Q ss_conf 02599814310026774396279981243253201102784353223440234630211347536417862034313426
Q gi|254780170|r 77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTT 156 (342)
Q Consensus 77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~ 156 (342)
+|++++.+|..+++++++|++|+.+.+++.|++|+ ..++|+.||+.++..+++++++++++++||+|++|||+.||+.
T Consensus 82 ~v~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~--~~~~fs~p~~~~~~~~~~~~~~~i~s~~dL~g~~I~v~~gs~~ 159 (259)
T 2v25_A 82 KIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERK--RIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATT 159 (259)
T ss_dssp SEEEEECCTTTHHHHHHTTSCSEECSSCBCCHHHH--TTEEECSCSEEEEEEEEEEGGGCCCSGGGCTTCEEEEETTCSH
T ss_pred EEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCHHHH--HCEEECEEEECCCCCEEEECCCCCCCHHHHCCCCCCEECCCCH
T ss_conf 79999833775899997699660033366897881--0114220344045430220357979978926985002347707
Q ss_pred HHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHH
Q ss_conf 99999999862998507874798999999873960299825047999998367800100256444237101000277757
Q gi|254780170|r 157 ELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTE 236 (342)
Q Consensus 157 e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~ 236 (342)
+..+.++++..+++++++.|++.++++.+|.+|||||++.|...+..+. ...+.++++.++.||++++++++|++
T Consensus 160 ~~~l~~~~~~~~~~~~~~~~~s~~~~~~~l~~g~vDa~i~d~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~k~~~~ 234 (259)
T 2v25_A 160 KKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYV-----DDKSEILPDSFEPQSYGIVTKKDDPA 234 (259)
T ss_dssp HHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHTTTC-----CTTEEECSCCCSEEEECCEEETTCHH
T ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCEEEEEECCHHHHHHHH-----HHCCCCCCCCCCCEEEEEEEECCCHH
T ss_conf 7889999987088444421420788876542783789973599999999-----73974357877732699999589999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999988774433
Q gi|254780170|r 237 WYNIVSWTHYAM 248 (342)
Q Consensus 237 w~d~V~W~~~al 248 (342)
|.+.++..+..|
T Consensus 235 l~~~ln~~l~~~ 246 (259)
T 2v25_A 235 FAKYVDDFVKEH 246 (259)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999982