HHsearch results for GI: 254780170 and protein with PDBid: 3fzv_A
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=96.22 E-value=0.068 Score=30.92 Aligned_cols=180 Identities=10% Similarity=-0.008 Sum_probs=108.4
Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342)
Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342)
+|.+++|+...... .+-.++.+.+.+.- ...++++...+..+.+..|.+|++|+.+.......
T Consensus 94 ~~~~~i~~~~~~~~-----------~~l~~~l~~~~~~~--P~i~l~~~~~~~~~~~~~L~~~~~Di~i~~~~~~~---- 156 (306)
T 3fzv_A 94 AGQIDIGCFETVAP-----------LYLPGLIAGFRQAY--PGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLD---- 156 (306)
T ss_dssp CEEEEEEEEGGGHH-----------HHHHHHHHHHHHHC--TTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSCC----
T ss_pred CCEEEEEEEHHHHH-----------HHHHHHHHHHHHHC--CCEEEEEEECCHHHHHHHHHCCCCCEEEEECCCCC----
T ss_conf 75268885047899-----------99899999998538--97499999787799999998599736888357899----
Q ss_pred CCCCCCCCCCCCC-CEEEEEECCCC-----CCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCE-EEECCHHHHHHH
Q ss_conf 0278435322344-02346302113-----4753641786203431342699999999862998507-874798999999
Q gi|254780170|r 113 SLGLAFRPITYFD-GQGFIMHKKKG-----ISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHP-IVFERVEEIDAA 185 (342)
Q Consensus 113 ~~~v~Fs~~~~~d-gq~~lVrk~~~-----i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~~a~~a 185 (342)
...... +.+.. -..+.++++.. ..+++||.+..+....+......+.+++...+..... ..+++......+
T Consensus 157 -~~~~~~-~l~~~~~~~v~~~~~~~l~~~~~~~~~dl~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 234 (306)
T 3fzv_A 157 -STIETE-PLMPPQRPHALLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGM 234 (306)
T ss_dssp -TTEEEE-ESSCCBCCEEEEETTCTTTTSSEECHHHHTTSCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHH
T ss_pred -CCCEEE-EECCCCEEEEEECCCHHHHCCCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf -872589-921462689996264265337889999981799898459876510455676538775425467888999999
Q ss_pred HHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCH
Q ss_conf 873960299825047999998367800100256--44423710100027775
Q gi|254780170|r 186 YRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDT 235 (342)
Q Consensus 186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~ 235 (342)
+..|..=++..+..... ...+....+++| +......+.++.+++..
T Consensus 235 v~~g~gi~~lp~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~ 282 (306)
T 3fzv_A 235 VGQGFGFSLLVTRPHSE----CTYDGKKVVMVDLAEPVSTSGLAAAWLKRAQ 282 (306)
T ss_dssp HHTTSCBEEECCCCSCS----BCTTSCBEEEEEESSCCCBCCCEEEEETTSC
T ss_pred HHCCCEEEEEEHHHHHH----HHHCCCCEEEEECCCCCCCCEEEEEEECCCC
T ss_conf 98099499942587889----8756997799867788764279999989898