HHsearch results for GI: 254780170 and protein with PDBid: 3gxa_A
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=98.34 E-value=1.1e-05 Score=55.05 Aligned_cols=183 Identities=11% Similarity=0.061 Sum_probs=103.7
Q ss_pred HHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCC
Q ss_conf 9985794999871789883068898988015099999999996798220259981-431002677439627998124325
Q gi|254780170|r 29 DIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWT 107 (342)
Q Consensus 29 ~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T 107 (342)
.-.+..+|++|+.++ |++- +-.+..+.+++..+ .+||+++. ++.....||.+|++|+-+.....-
T Consensus 18 ~~~~~~~i~ig~~~~--~~~~---------~~~~~v~~~~k~~G---i~Ve~v~f~d~~~~n~AL~~G~iD~n~~q~~p~ 83 (275)
T 3gxa_A 18 NGAAKKEIVFGTTVG--DFGD---------MVKEQIQPELEKKG---YTVKLVEFTDYVRPNLALAEGELDINVFQHKPY 83 (275)
T ss_dssp -----CEEEEEEETT--HHHH---------HHHHTHHHHHHTTT---CEEEEEEESSSSHHHHHHHHTSCSEEEEECHHH
T ss_pred CCCCCCEEEEEEECC--CHHH---------HHHHHHHHHHHHCC---CEEEEEEECCCHHHHHHHHCCCCCEECCCCHHH
T ss_conf 778885289996069--8799---------99999899999659---879999957833578998669955431445788
Q ss_pred CC---CHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHC-CCCEEEEECCCHHHHHHHHHHHCCC--------------
Q ss_conf 32---01102784353223440234630211347536417-8620343134269999999986299--------------
Q gi|254780170|r 108 LL---REISLGLAFRPITYFDGQGFIMHKKKGISSVSQLS-GASICVQAGTTTELTLADYFKAHNM-------------- 169 (342)
Q Consensus 108 ~~---Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~-G~~I~v~~GTT~e~~l~~~~~~~~~-------------- 169 (342)
+. ++....+....+++....++..+ +++|++||. |++|++...++.+..+-..+...|+
T Consensus 84 l~~~~~~~g~~l~~v~~~~~~~~glys~---k~ksl~dl~~G~kIaip~d~sn~~raL~~L~~~Gli~l~~~~~~~~~t~ 160 (275)
T 3gxa_A 84 LDDFKKEHNLDITEVFQVPTAPLGLYPG---KLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASK 160 (275)
T ss_dssp HHHHHHHHTCCEEEEEECCBCCCEEEES---SCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCG
T ss_pred HHHHHHHCCCCEEEEEEEECCCEEEEEC---CCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEECCCCCCCCCCCC
T ss_conf 9999997799679985631155066632---6565413589998998248636889999998669531168877554540
Q ss_pred --------CCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCH
Q ss_conf --------850787479899999987396029982504799999836780010025644423710100027775
Q gi|254780170|r 170 --------KYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDT 235 (342)
Q Consensus 170 --------~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~ 235 (342)
.++++..+ ......+| +.+|+.+...+ ......+ +|.+....+ .-+.-+..+++|++|.
T Consensus 161 ~di~~n~~~l~~~~~~-~~~l~~~l--~dvD~avi~~~--~~~~agl-~~~~~l~~e-~~~~y~nvivvr~~~~ 227 (275)
T 3gxa_A 161 ADIAENLKNIKIVELE-AAQLPRSR--ADVDFAVVNGN--YAISSGM-KLTEALFQE-PSFAYVNWSAVKTADK 227 (275)
T ss_dssp GGEEECTTCCEEEEEC-GGGHHHHT--TTSSEEEECHH--HHHHTTC-CGGGCSEEC-CCCTTCCEEEEEGGGT
T ss_pred CHHHHCCCCCEEEECC-HHHHHHHC--CCCCEEEECCC--HHHHCCC-CHHHCCCCC-CCCCEEEEEEEECCCC
T ss_conf 0043276564599856-66631312--67558996464--6877599-823400027-7876369999807677