HHsearch results for GI: 254780170 and protein with PDBid: 3ix1_A
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=98.97 E-value=4.1e-09 Score=76.69 Aligned_cols=173 Identities=16% Similarity=0.080 Sum_probs=106.0
Q ss_pred CEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCC-CCCHHCCCCCC---CCCCCCCCEEEEEECCCCCCCHHHHCCCCEEE
Q ss_conf 20259981-431002677439627998124325-32011027843---53223440234630211347536417862034
Q gi|254780170|r 76 SKIQYLPL-NAKERFLALQSKQIDILSRNTDWT-LLREISLGLAF---RPITYFDGQGFIMHKKKGISSVSQLSGASICV 150 (342)
Q Consensus 76 ~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T-~~Rd~~~~v~F---s~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v 150 (342)
.+||+++. ++...+.+|.+|++|+.+.++... ..| ..+.++ ...+-..+.+++++++++|++++||+||+|++
T Consensus 34 l~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~l~~~~~~~i~~~~DLkGK~v~~ 111 (302)
T 3ix1_A 34 LDVDIVFPTNPTDPIQLTASGAIPLALSYQPDVILAR--SKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADLVGLTVGY 111 (302)
T ss_dssp EEEEEECCSSTTHHHHHHHHTSCSEEEECHHHHHHHH--HTTCCEEEEEEEECSCCEEEEEEGGGCCSSGGGGTTSEEEE
T ss_pred CEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHH--HCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHHCCCCCCC
T ss_conf 7189995798059999997799898997758999987--33488589985405897369985377988878956762217
Q ss_pred EECCCHHHHHHHHHHHCCCCC---CEEEECCHHHHHHHHHCCCEEEEEECC--HHHHHHHHHCCCCHHHCCC-CCCCCCC
Q ss_conf 313426999999998629985---078747989999998739602998250--4799999836780010025-6444237
Q gi|254780170|r 151 QAGTTTELTLADYFKAHNMKY---HPIVFERVEEIDAAYRAHRCDAYTGDI--SALYALKLTNDRPSEHVIL-PDIISKS 224 (342)
Q Consensus 151 ~~GTT~e~~l~~~~~~~~~~~---~~v~~~~~~~a~~al~~Gr~DA~~~D~--s~La~~~~~~~~p~~~~il-~e~iskE 224 (342)
..+++++..+..+++..|++. +++... .+...+|.+|++||++..- ......+.. .. +..++ +....-.
T Consensus 112 ~~~~~~~~~l~~~l~~~Gl~~~~v~~v~~~--~~~~~al~~G~iDa~~~~~~~~~~~~~~~~-g~--~~~~~~~~~~g~~ 186 (302)
T 3ix1_A 112 PGIPVNEPILKTMVEAAGGDYEQVHLMDVG--FELGASIVSGRADAVVGTYINHEYPVLKHE-GH--DISYFNPVDYGVP 186 (302)
T ss_dssp CSCTTHHHHHHHHHHHTTCCGGGCEEEECT--TCHHHHHHHSSSSEEEEEETTTHHHHHHHT-TC--CEEEECGGGTTCC
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEECCC--CCHHHHHHCCCCCEECCCCCCCHHHHHHHC-CC--CCCCCCHHHCCCC
T ss_conf 899778999999999728997611784588--438999985997700065466089999862-87--6322258870988
Q ss_pred CE---EEECCCC-CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10---1000277-7579999887744331121233
Q gi|254780170|r 225 PL---APAIIQG-DTEWYNIVSWTHYAMVTAEELG 255 (342)
Q Consensus 225 Pl---g~avr~g-D~~w~d~V~W~~~ali~Aee~g 255 (342)
++ ..++++. -.+=.++|+-.+.|+..|-++-
T Consensus 187 ~~~~~~~~~~~~~~~~~p~~v~~f~~A~~~a~~~~ 221 (302)
T 3ix1_A 187 EYDELVLISNEAYVEESGEVLAAFWRAALKGYEWM 221 (302)
T ss_dssp CCCSEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEECCHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 87663110469999879699999999999999999