HHsearch results for GI: 254780170 and protein with PDBid: 3jv9_A
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=95.54 E-value=0.13 Score=29.09 Aligned_cols=198 Identities=12% Similarity=0.071 Sum_probs=115.5
Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342)
Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342)
+|.|++|+......+ +=..+.+.+.+.- ...++++...+..+.+..|.+|++|+.+..... .
T Consensus 3 ~G~lrIG~~~s~~~~-----------~lp~~l~~f~~~~--P~v~l~i~~~~~~~l~~~l~~g~~D~~i~~~~~--~--- 64 (219)
T 3jv9_A 3 EGAFKLGLIFTVAPY-----------LLPKLIVSLRRTA--PKMPLMLEENYTHTLTESLKRGDVDAIIVAEPF--Q--- 64 (219)
T ss_dssp CCCEEEEEETTTHHH-----------HHHHHHHHHHHHS--TTCCEEEEEECHHHHHHHHHHTSSSEEEEESSC--C---
T ss_pred CEEEEEEEEHHHHHH-----------HHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHCCCEEEEEECCCC--C---
T ss_conf 028999977788999-----------9999999999988--892899998873777765616958887502687--7---
Q ss_pred CCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCC-----C-CEEEECCHH
Q ss_conf 02784353223440234630211-----347536417862-03431342699999999862998-----5-078747989
Q gi|254780170|r 113 SLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMK-----Y-HPIVFERVE 180 (342)
Q Consensus 113 ~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~-----~-~~v~~~~~~ 180 (342)
..++.+. +.+.+...++++++. ...+.+++.... +....+......+...+...+.+ . .....++..
T Consensus 65 ~~~~~~~-~l~~e~~~lv~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (219)
T 3jv9_A 65 EPGIVTE-PLYDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSIN 143 (219)
T ss_dssp CTTEEEE-EEEEEEEEEEEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHH
T ss_pred CCCEEEE-EECCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCHH
T ss_conf 7874898-503310899975664212245421133322774446888526789999999758985313455626778799
Q ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CC-CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999873960299825047999998367800100256--44-4237101000277757999988774433112123301
Q gi|254780170|r 181 EIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DI-ISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGIT 257 (342)
Q Consensus 181 ~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~-iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git 257 (342)
...+...+|-.=++.-... + + ..+.....++| +. .+. .+..+.|++-. -...+++.+..+.+++-.||+
T Consensus 144 ~~~~lv~~G~Gi~~lP~~~-~---~--~~~~~~l~~~pl~~~~~~~-~i~lv~~k~~~-~~~~~~~~~~~l~~~~~~~~~ 215 (219)
T 3jv9_A 144 TIRHMVASGLAISVLPATA-L---T--ENDHMLFSIIPFEGTPPSR-RVVLAYRRNFV-RPKALSAMKAAIMQSQLHGVS 215 (219)
T ss_dssp HHHHHHHHTSCEEEEEGGG-C---C--TTCTTTEEEECCSSSCCEE-EEEEEEETTCS-CHHHHHHHHHHHHTSCCSSCE
T ss_pred HHHHHHHCCCEEEECCHHH-H---H--HCCCCCEEEEECCCCCCEE-EEEEEEECCCC-CCHHHHHHHHHHHHHCCCCCC
T ss_conf 9999998599899871889-7---1--1427998999888998545-99999989498-899999999999973556765