HHsearch results for GI: 254780170 and protein with PDBid: 3kg2_A
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.22 E-value=1e-09 Score=80.42 Aligned_cols=213 Identities=15% Similarity=0.115 Sum_probs=135.3
Q ss_pred HCCEEEEEEECCCCCCEEECCC-------CCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-------------CCCCCHHH
Q ss_conf 5794999871789883068898-------988015099999999996798220259981-------------43100267
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKAN-------GDWKGFDVDFCRALSSAIFDDPSKIQYLPL-------------NAKERFLA 91 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~-------G~~~GfDVDl~raiAaal~gd~~kVe~v~~-------------~~~~rf~a 91 (342)
....|++++.. .|||.+...+ .+++||.+|+.+.+|+.+.- ..++... +|...+..
T Consensus 382 ~~~~l~v~~~~-~~P~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~lnf---~~~~~~~~~~~~g~~~~~~~~~~g~~~~ 457 (823)
T 3kg2_A 382 EQKTVVVTTIL-ESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGF---KYKLTIVGDGKYGARDADTKIWNGMVGE 457 (823)
T ss_dssp CCCCEEEEECC-CTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTC---CEEEEECSSCCCCCBCTTTCCBCHHHHH
T ss_pred CCCCCCCCCCC-CCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCC---EEEEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf 67410005545-6981999478888899864535769999998864596---0799987778758765888751456643
Q ss_pred HHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCC-CH------------------------------
Q ss_conf 74396279981243253201102784353223440234630211347-53------------------------------
Q gi|254780170|r 92 LQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGIS-SV------------------------------ 140 (342)
Q Consensus 92 L~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~-s~------------------------------ 140 (342)
|.+|++|+.++++++|.+| ...++|+.||+.++..++|++..... ++
T Consensus 458 l~~~~~D~ai~~~~it~~r--~~~v~fs~p~~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~~~~~~~ 535 (823)
T 3kg2_A 458 LVYGKADIAIAPLTITLVR--EEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVS 535 (823)
T ss_dssp HHTTSCSEECSCCBCCHHH--HTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC
T ss_pred HHCCCCCEEEEEEEECHHH--HHHCCCCCCEEECCEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2000234699999970787--51224353114533699997577777208898703638999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780170|r 141 -------------------------------------------------------------------------------- 140 (342)
Q Consensus 141 -------------------------------------------------------------------------------- 140 (342)
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~p~s~~~R~l~~~~~l~~lil~~~Y~a~L~s~l 615 (823)
T 3kg2_A 536 RFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFL 615 (823)
T ss_dssp -----------------------CHHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCHHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 85546431400025655555421110069999999999986677643346568999999999999999999998777521
Q ss_pred ------------HHHC--C-CCEEEEECCCHHHHHHHHHHHCCCC------------CCEEEECCHHHHHHHHHCCC-EE
Q ss_conf ------------6417--8-6203431342699999999862998------------50787479899999987396-02
Q gi|254780170|r 141 ------------SQLS--G-ASICVQAGTTTELTLADYFKAHNMK------------YHPIVFERVEEIDAAYRAHR-CD 192 (342)
Q Consensus 141 ------------~dL~--G-~~I~v~~GTT~e~~l~~~~~~~~~~------------~~~v~~~~~~~a~~al~~Gr-~D 192 (342)
+||. + ..+++..++..+. ++...... -....+.+..+.+..+..++ ..
T Consensus 616 t~~~~~~~i~sl~dL~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (823)
T 3kg2_A 616 TVERMVSPIESAEDLSKQTEIAYGTLDSGSTKE----FFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKY 691 (823)
T ss_dssp HHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHH----HHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSE
T ss_pred CCCCCCCCCCCHHHHHHCCCCEEEEECCCHHHH----HHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCE
T ss_conf 345457897899999747885599964707999----9986552679999998632474223589999999997269868
Q ss_pred EEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99825047999998367800100256444237101000277757999988774433112123301520
Q gi|254780170|r 193 AYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKN 260 (342)
Q Consensus 193 A~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~n 260 (342)
|+..|...+... ...++.++.++++.+...++++++++|= -|++..+..+.- -.|.|+-+.=
T Consensus 692 a~~~~~~~~~y~--~~~~~~~~~~~~~~~~~~~~~~~~~k~S-p~~~~~n~~i~~---l~e~Gl~~~~ 753 (823)
T 3kg2_A 692 AYLLESTMNEYI--EQRKPCDTMKVGGNLDSKGYGIATPKGS-SLGTPVNLAVLK---LSEQGLLDKL 753 (823)
T ss_dssp EEEEEHHHHHHH--HTSTTCCEEEESCCSSCEEECCEEETTC-SSHHHHHHHHHH---HHHTTHHHHH
T ss_pred EEEECHHHHHHH--HHCCCCCEEEECCCCCCCCEEEEECCCC-HHHHHHHHHHHH---HHHCCHHHHH
T ss_conf 999627999999--9617988599586145661799989988-418999999999---9747899999