HHsearch results for GI: 254780170 and protein with PDBid: 3oxn_A
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=94.12 E-value=0.31 Score=26.75 Aligned_cols=171 Identities=10% Similarity=-0.043 Sum_probs=96.6
Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342)
Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342)
+|++++|+..... ..+=..+++.+.+.-- ...+++.+.+..+....|..|++|+.+........
T Consensus 18 ~~~~rI~~~~~~~-----------~~~lp~ll~~l~~~~P--~v~i~l~~~~~~~~~~~L~~g~iDl~I~~~~~~~~--- 81 (241)
T 3oxn_A 18 DQTFTIATTDYAM-----------QTILPFALPRIYQEAP--NVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVE--- 81 (241)
T ss_dssp CCEEEEEECSHHH-----------HHTHHHHHHHHHHHCT--TCEEEEEECCGGGHHHHHHTSCCSEEEECCSSCCT---
T ss_pred CCEEEEEECHHHH-----------HHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCC---
T ss_conf 8689999737999-----------9999999999999886--92899997987999999975985422202678741---
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCC----CCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCC-EEEECCHHHHHHHH
Q ss_conf 027843532234402346302113----47536417862-0343134269999999986299850-78747989999998
Q gi|254780170|r 113 SLGLAFRPITYFDGQGFIMHKKKG----ISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYH-PIVFERVEEIDAAY 186 (342)
Q Consensus 113 ~~~v~Fs~~~~~dgq~~lVrk~~~----i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~-~v~~~~~~~a~~al 186 (342)
.+.+ .+.+-+.-.++++++.. --+++|+.... |.+..+......+..++.. +..-+ .+..++...+...+
T Consensus 82 --~l~~-~~l~~~~~v~v~~~~HPl~~~~~t~~dl~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~lv 157 (241)
T 3oxn_A 82 --PLRS-EILGRVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALIEQALID-KPQRKMVLRAYHLEAALAIV 157 (241)
T ss_dssp --TEEE-EEEECCCEEEEEETTSGGGGSCCCHHHHHTSEEEECSCCHHHHHHHHHHSTT-SCCCEEEEECSSTHHHHHHC
T ss_pred --CCCC-CCCCCCCCEEECCCCCHHHHCCCCHHHHHHCCEEEEECCCCCCHHHHHHHHH-CCCCCCEEEECCHHHHHHHH
T ss_conf --0113-5432236402237665032025889999529869995799862399999996-79998559967899999999
Q ss_pred HCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEE
Q ss_conf 739602998250479999983678001002564442371010
Q gi|254780170|r 187 RAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAP 228 (342)
Q Consensus 187 ~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~ 228 (342)
..|..=+++... ++... .+....+++|-++...|+-.
T Consensus 158 ~~~~~i~ilP~~--~~~~~---~~~~~L~~~plp~~~p~~~~ 194 (241)
T 3oxn_A 158 DTLPIIITVPAD--LAYLV---AERYDLVVKPLPFQFTPFDY 194 (241)
T ss_dssp --CCCEEEEEHH--HHHHH---HHHTTEEEECCSSCCCCCCE
T ss_pred HCCCEEEEHHHH--HHHHH---HHCCCEEEECCCCCCCCEEE
T ss_conf 759979987999--99988---65399699848999897689