RPSBLAST alignment for GI: 254780170 and conserved domain: cd00134
>gnl|CDD|29040 cd00134, PBPb, Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.. Length = 218
Score = 112 bits (280), Expect = 2e-25
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 14/229 (6%)
Query: 36 LKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSK 95
L G F+ ANG+ GFDVD +A++ + K++++ ++ AL+S
Sbjct: 1 LTVGTAGTYPPFSFRDANGELTGFDVDLAKAIAKEL---GVKVKFVEVDWDGLITALKSG 57
Query: 96 QIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTT 155
++D+++ T R + F Y GQ ++ K I SV L G + VQ G+T
Sbjct: 58 KVDLIAAGMTITPERAKQV--DFSDPYYKSGQVILVKKGSPIKSVKDLKGKKVAVQKGST 115
Query: 156 TELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHV 215
E Y K + + ++ E AA R DA D AL AL + P E
Sbjct: 116 AE----KYLKKALPEAKVVSYDDNAEALAALENGRADAVIVDEIALAALLKKH--PPELK 169
Query: 216 ILPDIISKSPLAPAII--QGDTEWYNIVSWTHYAMVTAEEL-GITQKNI 261
I+ I PL + + + E + V+ + EL I++K
Sbjct: 170 IVGPSIDLEPLGFGVAVGKDNKELLDAVNKALKELRADGELKKISKKWF 218