RPSBLAST alignment of GI: 254780170 and protein with PDBid: 1pb7
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292
Score = 68.4 bits (166), Expect = 2e-12
Identities = 29/236 (12%), Positives = 59/236 (25%), Gaps = 21/236 (8%)
Query: 18 TSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAI------ 71
+ + + G N G GF +D L+ +
Sbjct: 25 DGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEV 84
Query: 72 --------FDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITY 123
L S Q D++ R + F
Sbjct: 85 HLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQY--IEFSKPFK 142
Query: 124 FDGQGFIMHKKKGISSVSQL--SGASICVQAGTTTELTLADYFKAHNMK---YHPIVFER 178
+ G ++ K I+ ++ S T + ++ YF+ Y +
Sbjct: 143 YQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHN 202
Query: 179 VEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGD 234
E A +A R + I L+ + + V ++ +S + +
Sbjct: 203 YESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDS 258