BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780170|ref|YP_003064583.1| cationic amino acid ABC
transporter, periplasmic binding protein [Candidatus Liberibacter
asiaticus str. psy62]
(342 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 342
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/342 (100%), Positives = 342/342 (100%)
Query: 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFD 60
MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFD
Sbjct: 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFD 60
Query: 61 VDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRP 120
VDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRP
Sbjct: 61 VDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRP 120
Query: 121 ITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVE 180
ITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVE
Sbjct: 121 ITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVE 180
Query: 181 EIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNI 240
EIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNI
Sbjct: 181 EIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNI 240
Query: 241 VSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRII 300
VSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRII
Sbjct: 241 VSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRII 300
Query: 301 RHMGNYGEMFDRNLGNQSELKIPRGYNALWSKGGLMYAPPIR 342
RHMGNYGEMFDRNLGNQSELKIPRGYNALWSKGGLMYAPPIR
Sbjct: 301 RHMGNYGEMFDRNLGNQSELKIPRGYNALWSKGGLMYAPPIR 342
>gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 266
Score = 25.4 bits (54), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 86 KERFLALQSKQIDILSRNTDWTLLR 110
+E ++ L KQID++ +N D L R
Sbjct: 172 REEYIGLHQKQIDLIHQNIDRHLAR 196
>gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter
asiaticus str. psy62]
Length = 226
Score = 25.0 bits (53), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 196 GDISALYALKLTNDRPSEHVILPDIISKS--PLA 227
G A YA+ LT + H+ILP I+ S PL+
Sbjct: 120 GQWDASYAIGLTRKQTIRHIILPQTITTSAVPLS 153
>gi|254781210|ref|YP_003065623.1| hypothetical protein CLIBASIA_05585 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 343
Score = 23.9 bits (50), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 68 SSAIFDDPSKIQY-LPLNAKERFLALQSKQIDI 99
SSA F+D +KI+Y LP+ K + Q K ID+
Sbjct: 260 SSAKFED-TKIKYVLPIYCKSAVVFTQRKAIDV 291
>gi|254780237|ref|YP_003064650.1| DNA-directed RNA polymerase subunit alpha [Candidatus Liberibacter
asiaticus str. psy62]
Length = 340
Score = 23.5 bits (49), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 168 NMKYHPIVFERVEEIDAAYRAHRC-----DAYTGDI 198
++ ++P + ++VEE++ + R+ C Y GD+
Sbjct: 249 SLPFNPALLKKVEELELSVRSTNCLRGENIVYMGDL 284
>gi|254781133|ref|YP_003065546.1| hypothetical protein CLIBASIA_05175 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 159
Score = 23.5 bits (49), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 128 GFIMHKKKGISSVSQLSGASIC 149
G I H IS V +LSGAS C
Sbjct: 53 GIIYHNYCPISRVIELSGASDC 74
>gi|254780290|ref|YP_003064703.1| quinone oxidoreductase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 332
Score = 23.1 bits (48), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 248 MVTAEELGITQKNINQVSKDTTNP-DVQRFLGIDKSSNIGEALGLTKDWTYR----IIRH 302
++ E +G+ + ++ Q P + LG++ + I + T W + +
Sbjct: 37 LIKVEAIGVNRPDVMQRKGLYPPPKNANPILGLEVAGKIVDLGENTTHWNIGDEVCALVN 96
Query: 303 MGNYGEMFDRNLGNQSELKIPRGYNALWS 331
G Y E + G+ L IP+GYNA+ +
Sbjct: 97 GGGYAEYCLSHQGHT--LPIPKGYNAIQA 123
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,039
Number of Sequences: 1233
Number of extensions: 9247
Number of successful extensions: 35
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 11
length of query: 342
length of database: 328,796
effective HSP length: 75
effective length of query: 267
effective length of database: 236,321
effective search space: 63097707
effective search space used: 63097707
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)