254780171
ABC transporter membrane spanning protein (amino acid)
GeneID in NCBI database: | 8209148 | Locus tag: | CLIBASIA_00270 |
Protein GI in NCBI database: | 254780171 | Protein Accession: | YP_003064584.1 |
Gene range: | +(52654, 53850) | Protein Length: | 398aa |
Gene description: | ABC transporter membrane spanning protein (amino acid) | ||
COG prediction: | [E] ABC-type amino acid transport system, permease component | ||
KEGG prediction: | aapQ; ABC transporter membrane spanning protein (amino acid); K09970 general L-amino acid transport system permease protein | ||
SEED prediction: | Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4) | ||
Pathway involved in KEGG: | ABC transporters [PATH:las02010] | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 398 | ABC transporter membrane spanning protein (amino acid) | |||
254780172 | 386 | general L-amino acid transport system permease pro | 6e-14 | ||
254780172 | 386 | general L-amino acid transport system permease pro | 0.003 | ||
254781113 | 226 | amino acid ABC transporter (permease) [Candidatus | 2e-11 |
>gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 386 | Back alignment |
---|
Score = 70.1 bits (170), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 57/82 (69%) Query: 271 IALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQ 330 + +S + +A+IAE++R GL ++ +GQ EAA +LGL++ + RL+++PQ ++ +IP + + Sbjct: 254 LGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNT 313 Query: 331 YLNLLKNSSLAVAVGFADLVSV 352 ++ L K+SSL + DL+ + Sbjct: 314 FIGLFKDSSLISIINMFDLLGI 335 |
>gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 386 | Back alignment |
---|
Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 87 TAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIF 146 T++ G + T ++F G+I + +G L+ GR S ++ + C ++E+FR +P + V+F Sbjct: 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLF 230 Query: 147 FLYKSVLSVLPIPD 160 S++ L +PD Sbjct: 231 M--ASIMLPLFLPD 242 |
>gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter asiaticus str. psy62] Length = 226 | Back alignment |
---|
Score = 61.6 bits (148), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 112/217 (51%), Gaps = 40/217 (18%) Query: 177 SFPTL-------TMDTNAKIFVFSFVLGIVLSLFATRLSR-------HFHEKTGKALPLL 222 SFP L T+ FV S ++G +++ S HF+ + PLL Sbjct: 12 SFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLL 71 Query: 223 YISTFLIF-GLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFI 281 + F+IF GLP + ++ FD F+++ I+L+ +A+I Sbjct: 72 -VQLFVIFYGLPHIGIV-------FDS-----------------FVAIIISLTLNFSAYI 106 Query: 282 AEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLA 341 +EI+RS +I++P+GQ +A+ A+GLT ++ R ++LPQ + + PL+S+++++LK++S+A Sbjct: 107 SEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA 166 Query: 342 VAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLS 378 + ++ I++ T Q + I F+YL L+ Sbjct: 167 STITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILT 203 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 398 | ABC transporter membrane spanning protein (amino acid) | |||
315122674 | 398 | ABC transporter membrane spanning protein (amino acid) | 1 | 1e-175 | |
222148881 | 398 | ABC transporter membrane spanning protein (amino acid) | 1 | 1e-113 | |
325292971 | 398 | General L-amino acid transport system permease protein | 1 | 1e-111 | |
159184824 | 398 | ABC transporter, membrane spanning protein (amino acid) | 1 | 1e-110 | |
116251959 | 400 | general L-amino acid transport system permease [Rhizobi | 1 | 1e-108 | |
241204487 | 400 | polar amino acid ABC transcriptional regulator inner me | 1 | 1e-106 | |
227821879 | 397 | putative amino-acid ABC transporter membrane protein [S | 1 | 1e-106 | |
239831566 | 408 | amino acid ABC transporter, permease protein, 3-TM regi | 1 | 1e-103 | |
86357518 | 406 | general L-amino acid ABC transporter, permease protein | 1 | 1e-103 | |
153009883 | 397 | polar amino acid ABC transporter inner membrane subunit | 1 | 1e-103 |
>gi|315122674|ref|YP_004063163.1| ABC transporter membrane spanning protein (amino acid) [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 398 | Back alignment and organism information |
---|
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 301/398 (75%), Positives = 347/398 (87%) Query: 1 MIKNARKTVTRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLG 60 M+KN + F MKFLYD+R+ +I +Q ++ ++T++ LW VNNV++NM KSNLSLG Sbjct: 1 MMKNIKSMFNHNFCEMKFLYDVRIRSILIQAVILSIVTMVILWLVNNVHHNMVKSNLSLG 60 Query: 61 IGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLS 120 IGFL ERAGFEIDQGI+PYTSDSSYA AI+VGF NTF +AF+G+IPATIIG LVG GRLS Sbjct: 61 IGFLKERAGFEIDQGIIPYTSDSSYAMAIVVGFSNTFMVAFAGIIPATIIGVLVGTGRLS 120 Query: 121 ANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPT 180 +NKLV+WICRVYVEVFRNIPPLVVIFF Y+SVLS+LPIP+HSI LP G+FLNNRG SFPT Sbjct: 121 SNKLVSWICRVYVEVFRNIPPLVVIFFWYRSVLSILPIPEHSISLPLGIFLNNRGFSFPT 180 Query: 181 LTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIAL 240 L MD NAKI +FSFVLGI LS+F+ +LSR FH KTG+ LPL Y++ LI GLP LVL+AL Sbjct: 181 LIMDINAKIVLFSFVLGIALSIFSAKLSRQFHMKTGQTLPLFYVAVLLILGLPMLVLLAL 240 Query: 241 KYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAA 300 +QL+FDKPVLG+FNF GG T+ PEFMSLYIALSCYTA+FIAEI+R GLI+V RGQMEAA Sbjct: 241 NFQLYFDKPVLGKFNFTGGCTIGPEFMSLYIALSCYTASFIAEIIRLGLISVSRGQMEAA 300 Query: 301 IALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQT 360 IALGLT KATRLV+LPQAMR IIPPLTSQYLNLLKNSSLAVAVGFADLVSVGG+IINQT Sbjct: 301 IALGLTPGKATRLVILPQAMRIIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGSIINQT 360 Query: 361 GQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK 398 GQAIEIILIWMFIYLSLSIMI+LFMN LN K+ALKE++ Sbjct: 361 GQAIEIILIWMFIYLSLSIMISLFMNWLNTKVALKERR 398 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222148881|ref|YP_002549838.1| ABC transporter membrane spanning protein (amino acid) [Agrobacterium vitis S4] Length = 398 | Back alignment and organism information |
---|
>gi|325292971|ref|YP_004278835.1| General L-amino acid transport system permease protein aapQ [Agrobacterium sp. H13-3] Length = 398 | Back alignment and organism information |
---|
>gi|159184824|ref|NP_354576.2| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium tumefaciens str. C58] Length = 398 | Back alignment and organism information |
---|
>gi|116251959|ref|YP_767797.1| general L-amino acid transport system permease [Rhizobium leguminosarum bv. viciae 3841] Length = 400 | Back alignment and organism information |
---|
>gi|241204487|ref|YP_002975583.1| polar amino acid ABC transcriptional regulator inner membrane protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 400 | Back alignment and organism information |
---|
>gi|227821879|ref|YP_002825849.1| putative amino-acid ABC transporter membrane protein [Sinorhizobium fredii NGR234] Length = 397 | Back alignment and organism information |
---|
>gi|239831566|ref|ZP_04679895.1| amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family [Ochrobactrum intermedium LMG 3301] Length = 408 | Back alignment and organism information |
---|
>gi|86357518|ref|YP_469410.1| general L-amino acid ABC transporter, permease protein [Rhizobium etli CFN 42] Length = 406 | Back alignment and organism information |
---|
>gi|153009883|ref|YP_001371098.1| polar amino acid ABC transporter inner membrane subunit [Ochrobactrum anthropi ATCC 49188] Length = 397 | Back alignment and organism information |
---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 398 | ABC transporter membrane spanning protein (amino acid) | ||
COG0765 | 222 | COG0765, HisM, ABC-type amino acid transport system, pe | 4e-31 | |
COG4215 | 230 | COG4215, ArtQ, ABC-type arginine transport system, perm | 2e-18 | |
COG4160 | 228 | COG4160, ArtM, ABC-type arginine/histidine transport sy | 6e-18 | |
TIGR03003 | 212 | TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC tra | 2e-16 | |
PRK09494 | 219 | PRK09494, glnP, glutamine ABC transporter permease prot | 2e-16 | |
PRK15100 | 220 | PRK15100, PRK15100, amino acid ABC transporter permease | 2e-16 | |
PRK11123 | 238 | PRK11123, PRK11123, arginine transporter permease subun | 5e-12 | |
cd06261 | 190 | cd06261, TM_PBP2, Transmembrane subunit (TM) found in P | 6e-09 | |
PRK11122 | 222 | PRK11122, artM, arginine transporter permease subunit A | 1e-04 | |
PRK15107 | 224 | PRK15107, PRK15107, glutamate/aspartate transport syste | 8e-18 | |
TIGR03004 | 214 | TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC tra | 2e-13 | |
PRK15069 | 234 | PRK15069, PRK15069, histidine/lysine/arginine/ornithine | 6e-06 | |
pfam00528 | 183 | pfam00528, BPD_transp_1, Binding-protein-dependent tran | 1e-04 | |
TIGR01726 | 99 | TIGR01726, HEQRo_perm_3TM, amine acid ABC transporter, | 6e-11 | |
COG0765 | 222 | COG0765, HisM, ABC-type amino acid transport system, pe | 2e-10 | |
COG4215 | 230 | COG4215, ArtQ, ABC-type arginine transport system, perm | 2e-06 | |
COG4160 | 228 | COG4160, ArtM, ABC-type arginine/histidine transport sy | 1e-05 | |
PRK15100 | 220 | PRK15100, PRK15100, amino acid ABC transporter permease | 4e-05 | |
TIGR03004 | 214 | TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC tra | 4e-05 | |
TIGR03003 | 212 | TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC tra | 6e-05 | |
PRK15107 | 224 | PRK15107, PRK15107, glutamate/aspartate transport syste | 1e-04 | |
PRK09494 | 219 | PRK09494, glnP, glutamine ABC transporter permease prot | 0.001 | |
PRK15135 | 228 | PRK15135, PRK15135, histidine/lysine/arginine/ornithine | 0.002 | |
PRK15135 | 228 | PRK15135, PRK15135, histidine/lysine/arginine/ornithine | 7e-08 | |
COG2011 | 222 | COG2011, AbcD, ABC-type metal ion transport system, per | 3e-06 | |
PRK10782 | 217 | PRK10782, PRK10782, DL-methionine transporter permease | 4e-05 | |
TIGR02138 | 295 | TIGR02138, phosphate_pstC, phosphate ABC transporter, p | 6e-04 | |
COG0573 | 310 | COG0573, PstC, ABC-type phosphate transport system, per | 0.003 | |
COG4597 | 397 | COG4597, BatB, ABC-type amino acid transport system, pe | 1e-112 |
>gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>gnl|CDD|33942 COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>gnl|CDD|33906 COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>gnl|CDD|132048 TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC transporter, permease protein EhuD | Back alignment and domain information |
---|
>gnl|CDD|181907 PRK09494, glnP, glutamine ABC transporter permease protein; Reviewed | Back alignment and domain information |
---|
>gnl|CDD|185055 PRK15100, PRK15100, amino acid ABC transporter permease; Provisional | Back alignment and domain information |
---|
>gnl|CDD|182979 PRK11123, PRK11123, arginine transporter permease subunit ArtQ; Provisional | Back alignment and domain information |
---|
>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs | Back alignment and domain information |
---|
>gnl|CDD|182978 PRK11122, artM, arginine transporter permease subunit ArtM; Provisional | Back alignment and domain information |
---|
>gnl|CDD|185062 PRK15107, PRK15107, glutamate/aspartate transport system permease GltK; Provisional | Back alignment and domain information |
---|
>gnl|CDD|132049 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC transporter, permease protein EhuC | Back alignment and domain information |
---|
>gnl|CDD|185029 PRK15069, PRK15069, histidine/lysine/arginine/ornithine ABC transporter permease HisM; Provisional | Back alignment and domain information |
---|
>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system inner membrane component | Back alignment and domain information |
---|
>gnl|CDD|130787 TIGR01726, HEQRo_perm_3TM, amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family | Back alignment and domain information |
---|
>gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>gnl|CDD|33942 COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>gnl|CDD|33906 COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>gnl|CDD|185055 PRK15100, PRK15100, amino acid ABC transporter permease; Provisional | Back alignment and domain information |
---|
>gnl|CDD|132049 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC transporter, permease protein EhuC | Back alignment and domain information |
---|
>gnl|CDD|132048 TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC transporter, permease protein EhuD | Back alignment and domain information |
---|
>gnl|CDD|185062 PRK15107, PRK15107, glutamate/aspartate transport system permease GltK; Provisional | Back alignment and domain information |
---|
>gnl|CDD|181907 PRK09494, glnP, glutamine ABC transporter permease protein; Reviewed | Back alignment and domain information |
---|
>gnl|CDD|185089 PRK15135, PRK15135, histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Provisional | Back alignment and domain information |
---|
>gnl|CDD|185089 PRK15135, PRK15135, histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Provisional | Back alignment and domain information |
---|
>gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>gnl|CDD|182726 PRK10782, PRK10782, DL-methionine transporter permease subunit; Provisional | Back alignment and domain information |
---|
>gnl|CDD|162724 TIGR02138, phosphate_pstC, phosphate ABC transporter, permease protein PstC | Back alignment and domain information |
---|
>gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>gnl|CDD|34232 COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 398 | ABC transporter membrane spanning protein (amino acid) | ||
COG4597 | 397 | BatB ABC-type amino acid transport system, permease com | 100.0 | |
PRK11275 | 319 | pstC phosphate transporter permease subunit; Provisiona | 99.73 | |
PRK10160 | 275 | taurine transporter subunit; Provisional | 99.63 | |
COG0573 | 310 | PstC ABC-type phosphate transport system, permease comp | 99.52 | |
COG0600 | 258 | TauC ABC-type nitrate/sulfonate/bicarbonate transport s | 99.41 | |
TIGR02138 | 317 | phosphate_pstC phosphate ABC transporter, permease prot | 99.33 | |
COG4168 | 321 | SapB ABC-type antimicrobial peptide transport system, p | 96.13 | |
COG0765 | 222 | HisM ABC-type amino acid transport system, permease com | 100.0 | |
PRK11123 | 238 | arginine transporter permease subunit ArtQ; Provisional | 100.0 | |
PRK09494 | 219 | glnP glutamine ABC transporter permease protein; Review | 100.0 | |
PRK11122 | 222 | artM arginine transporter permease subunit ArtM; Provis | 100.0 | |
TIGR03003 | 218 | ectoine_ehuD ectoine/hydroxyectoine ABC transporter, pe | 100.0 | |
COG4160 | 228 | ArtM ABC-type arginine/histidine transport system, perm | 100.0 | |
TIGR03004 | 216 | ectoine_ehuC ectoine/hydroxyectoine ABC transporter, pe | 100.0 | |
COG4215 | 230 | ArtQ ABC-type arginine transport system, permease compo | 100.0 | |
PRK10782 | 217 | DL-methionine transporter permease subunit; Provisional | 100.0 | |
PRK11602 | 291 | cysW sulfate/thiosulfate transporter permease subunit; | 99.65 | |
COG2011 | 222 | AbcD ABC-type metal ion transport system, permease comp | 99.64 | |
PRK09421 | 229 | modB molybdate ABC transporter permease protein; Review | 99.61 | |
COG3639 | 283 | ABC-type phosphate/phosphonate transport system, permea | 99.59 | |
TIGR03226 | 312 | PhnU 2-aminoethylphosphonate ABC transporter, permease | 99.58 | |
PRK11365 | 263 | ssuC alkanesulfonate transporter permease subunit; Prov | 99.57 | |
PRK10683 | 317 | putrescine transporter subunit: membrane component of A | 99.45 | |
PRK09881 | 296 | ATP-dependent peptide transporter membrane subunit; Pro | 99.25 | |
COG1175 | 295 | UgpA ABC-type sugar transport systems, permease compone | 99.19 | |
PRK10914 | 339 | dipeptide transporter permease DppB; Provisional | 99.16 | |
PRK09471 | 306 | oppB oligopeptide transporter permease; Reviewed | 99.05 | |
PRK10352 | 314 | nickel transporter permease NikB; Provisional | 99.02 | |
COG1173 | 289 | DppC ABC-type dipeptide/oligopeptide/nickel transport s | 98.91 | |
COG0601 | 317 | DppB ABC-type dipeptide/oligopeptide/nickel transport s | 98.85 | |
TIGR01097 | 192 | 3A0109s02M phosphonate ABC transporter, permease protei | 98.36 | |
TIGR01726 | 99 | HEQRo_perm_3TM amino acid ABC transporter, permease pro | 99.95 | |
cd06261 | 190 | TM_PBP2 Transmembrane subunit (TM) found in Periplasmic | 99.71 | |
COG0581 | 292 | PstA ABC-type phosphate transport system, permease comp | 99.47 | |
TIGR03416 | 267 | ABC_choXWV_perm choline ABC transporter, permease prote | 99.39 | |
CHL00187 | 235 | cysT sulfate transport protein; Provisional | 99.18 | |
PRK10913 | 300 | dipeptide transporter; Provisional | 99.17 | |
PRK10417 | 272 | nikC nickel transporter permease NikC; Provisional | 99.09 | |
PRK10999 | 520 | malF maltose transporter membrane protein; Provisional | 98.86 | |
PRK10971 | 277 | sulfate/thiosulfate transporter subunit; Provisional | 99.65 | |
PRK09497 | 285 | potB spermidine/putrescine ABC transporter membrane pro | 99.61 | |
pfam00528 | 183 | BPD_transp_1 Binding-protein-dependent transport system | 99.57 | |
PRK09500 | 257 | potC spermidine/putrescine ABC transporter membrane pro | 99.56 | |
TIGR03255 | 272 | PhnV 2-aminoethylphosphonate ABC transport system, memb | 99.51 | |
PRK10592 | 281 | putrescine transporter subunit: membrane component of A | 99.43 | |
COG1178 | 540 | ThiP ABC-type Fe3+ transport system, permease component | 99.41 | |
TIGR03262 | 546 | PhnU2 putative 2-aminoethylphosphonate ABC transport sy | 99.38 | |
PRK09433 | 536 | thiP thiamine transporter membrane protein; Reviewed | 99.37 | |
COG1177 | 267 | PotC ABC-type spermidine/putrescine transport system, p | 99.37 | |
COG1174 | 221 | OpuBB ABC-type proline/glycine betaine transport system | 99.33 | |
PRK09433 | 536 | thiP thiamine transporter membrane protein; Reviewed | 99.22 | |
COG1178 | 540 | ThiP ABC-type Fe3+ transport system, permease component | 99.21 | |
PRK10561 | 280 | glycerol-3-phosphate transporter permease; Provisional | 99.17 | |
COG0555 | 274 | CysU ABC-type sulfate transport system, permease compon | 98.94 | |
TIGR02141 | 212 | modB_ABC molybdate ABC transporter, permease protein; I | 98.83 | |
COG4149 | 225 | ModC ABC-type molybdate transport system, permease comp | 98.34 | |
COG4176 | 290 | ProW ABC-type proline/glycine betaine transport system, | 98.21 | |
COG4209 | 309 | LplB ABC-type polysaccharide transport system, permease | 97.77 | |
TIGR02139 | 265 | permease_CysT sulfate ABC transporter, permease protein | 97.24 | |
TIGR00969 | 280 | 3a0106s02 sulfate ABC transporter, permease protein; In | 97.15 | |
COG4132 | 282 | ABC-type uncharacterized transport system, permease com | 96.5 | |
PRK11268 | 292 | pstA phosphate transporter permease subunit; Provisiona | 99.45 | |
TIGR00974 | 302 | 3a0107s02c phosphate ABC transporter, permease protein | 99.03 | |
TIGR03262 | 546 | PhnU2 putative 2-aminoethylphosphonate ABC transport sy | 99.31 | |
PRK10998 | 296 | malG maltose transporter permease; Provisional | 99.05 | |
COG1176 | 287 | PotB ABC-type spermidine/putrescine transport system, p | 98.75 | |
PRK10973 | 281 | glycerol-3-phosphate transporter membrane protein; Prov | 98.44 | |
TIGR01581 | 226 | Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR0 | 98.4 | |
COG0395 | 281 | UgpE ABC-type sugar transport system, permease componen | 97.92 | |
COG3833 | 282 | MalG ABC-type maltose transport systems, permease compo | 97.11 | |
COG4986 | 523 | ABC-type anion transport system, duplicated permease co | 95.6 | |
pfam03649 | 250 | UPF0014 Uncharacterized protein family (UPF0014). | 93.86 | |
PRK10952 | 354 | glycine betaine transporter membrane protein; Provision | 99.06 | |
COG4208 | 287 | CysW ABC-type sulfate transport system, permease compon | 96.94 | |
COG4590 | 733 | ABC-type uncharacterized transport system, permease com | 96.71 | |
TIGR02140 | 275 | permease_CysW sulfate ABC transporter, permease protein | 96.33 | |
COG4239 | 341 | ABC-type uncharacterized transport system, permease com | 95.57 | |
TIGR02789 | 315 | nickel_nikB nickel ABC transporter, permease subunit Ni | 91.76 |
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>PRK11275 pstC phosphate transporter permease subunit; Provisional | Back alignment and domain information |
---|
>PRK10160 taurine transporter subunit; Provisional | Back alignment and domain information |
---|
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC; InterPro: IPR011864 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] | Back alignment and domain information |
---|
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>PRK11123 arginine transporter permease subunit ArtQ; Provisional | Back alignment and domain information |
---|
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed | Back alignment and domain information |
---|
>PRK11122 artM arginine transporter permease subunit ArtM; Provisional | Back alignment and domain information |
---|
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD; InterPro: IPR014341 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC; InterPro: IPR014342 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG4215 ArtQ ABC-type arginine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>PRK10782 DL-methionine transporter permease subunit; Provisional | Back alignment and domain information |
---|
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional | Back alignment and domain information |
---|
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed | Back alignment and domain information |
---|
>COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein | Back alignment and domain information |
---|
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional | Back alignment and domain information |
---|
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional | Back alignment and domain information |
---|
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional | Back alignment and domain information |
---|
>COG1175 UgpA ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism] | Back alignment and domain information |
---|
>PRK10914 dipeptide transporter permease DppB; Provisional | Back alignment and domain information |
---|
>PRK09471 oppB oligopeptide transporter permease; Reviewed | Back alignment and domain information |
---|
>PRK10352 nickel transporter permease NikB; Provisional | Back alignment and domain information |
---|
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system | Back alignment and domain information |
---|
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems | Back alignment and domain information |
---|
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs | Back alignment and domain information |
---|
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein | Back alignment and domain information |
---|
>CHL00187 cysT sulfate transport protein; Provisional | Back alignment and domain information |
---|
>PRK10913 dipeptide transporter; Provisional | Back alignment and domain information |
---|
>PRK10417 nikC nickel transporter permease NikC; Provisional | Back alignment and domain information |
---|
>PRK10999 malF maltose transporter membrane protein; Provisional | Back alignment and domain information |
---|
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
---|
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed | Back alignment and domain information |
---|
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component | Back alignment and domain information |
---|
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed | Back alignment and domain information |
---|
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV | Back alignment and domain information |
---|
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional | Back alignment and domain information |
---|
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein | Back alignment and domain information |
---|
>PRK09433 thiP thiamine transporter membrane protein; Reviewed | Back alignment and domain information |
---|
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>PRK09433 thiP thiamine transporter membrane protein; Reviewed | Back alignment and domain information |
---|
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>PRK10561 glycerol-3-phosphate transporter permease; Provisional | Back alignment and domain information |
---|
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
>TIGR02141 modB_ABC molybdate ABC transporter, permease protein; InterPro: IPR011867 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism] | Back alignment and domain information |
---|
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system | Back alignment and domain information |
---|
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
>PRK11268 pstA phosphate transporter permease subunit; Provisional | Back alignment and domain information |
---|
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system | Back alignment and domain information |
---|
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein | Back alignment and domain information |
---|
>PRK10998 malG maltose transporter permease; Provisional | Back alignment and domain information |
---|
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional | Back alignment and domain information |
---|
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR006469 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism] | Back alignment and domain information |
---|
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism] | Back alignment and domain information |
---|
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>pfam03649 UPF0014 Uncharacterized protein family (UPF0014) | Back alignment and domain information |
---|
>PRK10952 glycine betaine transporter membrane protein; Provisional | Back alignment and domain information |
---|
>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 398 | ABC transporter membrane spanning protein (amino acid) | ||
3dhw_A | 217 | D-methionine transport system permease protein METI; AB | 1e-07 | |
3d31_C | 295 | Sulfate/molybdate ABC transporter, permease protein; AT | 1e-06 |
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 Length = 217 | Back alignment and structure |
---|
Score = 53.2 bits (127), Expect = 1e-07 Identities = 39/203 (19%), Positives = 78/203 (38%), Gaps = 12/203 (5%) Query: 190 FVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249 F FV+G+ + + K + + +P ++L+ Sbjct: 24 GFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIV 83 Query: 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRK 309 + + L+ A FIA +V + L+ +P G +EA+ A+G T + Sbjct: 84 GTS-----------IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQ 132 Query: 310 ATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILI 369 R VLLP+A+ ++ T + L+ S++ AVG L +G A + + Sbjct: 133 IVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTV 192 Query: 370 WMFIYLSLSIMIALFMNRLNAKI 392 + + + L +I +R+ + Sbjct: 193 -LVLLVILVYLIQFAGDRIVRAV 214 |
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 Length = 295 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 398 | ABC transporter membrane spanning protein (amino acid) | ||
3dhw_A | 217 | D-methionine transport system permease protein METI; AB | 99.94 | |
3d31_C | 295 | Sulfate/molybdate ABC transporter, permease protein; AT | 99.86 | |
2onk_C | 284 | Molybdate/tungstate ABC transporter, permease protein; | 99.84 | |
2r6g_F | 514 | Maltose transport system permease protein MALF; ABC tra | 99.7 | |
2r6g_G | 296 | Maltose transport system permease protein MALG; ABC tra | 99.33 |
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 | Back alignment and structure |
---|
Probab=99.94 E-value=2.3e-26 Score=178.05 Aligned_cols=206 Identities=23% Similarity=0.332 Sum_probs=162.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6526999999999999999999999999999999996-------264246787799999999501469999999999873 Q gi|254780171|r 82 DSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-------LSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLS 154 (398) Q Consensus 82 ~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-------lS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~ 154 (398) +|+..+-++-|+.||+++++.+.++++++|+.+|+.. ...+..+.+....+++++|++|.++.+++..... . T Consensus 2 s~~~~~l~l~~~~~Tl~~a~~~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~-~ 80 (217) T 3dhw_A 2 SEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFT-R 80 (217) T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHH-H T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H T ss_conf 878999999999999999999999999999999999999864443200899999999999999999999999999999-9 Q ss_pred HCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHH Q ss_conf 01210344410372035201000354535567004688778899999999999999864311223320455421010355 Q gi|254780171|r 155 VLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPT 234 (398) Q Consensus 155 ~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~ 234 (398) .. T Consensus 81 ~~------------------------------------------------------------------------------ 82 (217) T 3dhw_A 81 VI------------------------------------------------------------------------------ 82 (217) T ss_dssp HT------------------------------------------------------------------------------ T ss_pred HH------------------------------------------------------------------------------ T ss_conf 99------------------------------------------------------------------------------ Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH Q ss_conf 89997654443322100131112682148789999999999977879999999998346367899989689989988898 Q gi|254780171|r 235 LVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398) Q Consensus 235 l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398) . |.. ..+.+.++++++++..|+.+.+|+|++++|++|.|||+++|.|++|++|+| T Consensus 83 -----------------~------~~~--~~~~~~ii~~~~~~~~~~~~~~~~~l~~i~~~~~eAA~~lGas~~q~f~~v 137 (217) T 3dhw_A 83 -----------------V------GTS--IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKV 137 (217) T ss_dssp -----------------T------CCS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHT T ss_pred -----------------H------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHH T ss_conf -----------------8------612--369999999999867999999999998589899999871898989996974 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 768999997410478999999754999999999999999999831377589999999999999999999999996787 Q gi|254780171|r 315 LLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKI 392 (398) Q Consensus 315 IlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~ 392 (398) ++||+.+.+++++.+.++..+|+++++..+|.+|+...+.....+.++.-. .......+.++...+....++++||+ T Consensus 138 ilP~~~p~ii~~~~~~~~~~i~~~~i~~~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (217) T 3dhw_A 138 LLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATV-MNTVLVLLVILVYLIQFAGDRIVRAV 214 (217) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCCHHHHHHHHHHHSSCCTTH-HHHHHHHHHHHHHHHHHHCC------ T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 199789999999999999999999999999887999999999998600899-99999999999999999999999975 |
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 | Back alignment and structure |
---|
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1 | Back alignment and structure |
---|
>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F | Back alignment and structure |
---|
>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: f.58.1.1 PDB: 3fh6_G | Back alignment and structure |
---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
398 | ABC transporter membrane spanning protein (amino acid) | |||
d3dhwa1 | 203 | f.58.1.1 (A:6-208) D-methionine transport system permea | 2e-08 |
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Length = 203 | Back information, alignment and structure |
---|
class: Membrane and cell surface proteins and peptides fold: MetI-like superfamily: MetI-like family: MetI-like domain: D-methionine transport system permease protein MetI species: Escherichia coli [TaxId: 562] Score = 54.3 bits (130), Expect = 2e-08 Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 11/194 (5%) Query: 190 FVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249 F FV+G+ + + K + + +P ++L+ Sbjct: 19 GFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIV 78 Query: 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRK 309 + + L+ A FIA +V + L+ +P G +EA+ A+G T + Sbjct: 79 GTS-----------IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQ 127 Query: 310 ATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILI 369 R VLLP+A+ ++ T + L+ S++ AVG L +G A + + Sbjct: 128 IVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTV 187 Query: 370 WMFIYLSLSIMIAL 383 + + + + ++ Sbjct: 188 LVLLVILVYLIQFA 201 |
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 398 | ABC transporter membrane spanning protein (amino acid) | ||
d3dhwa1 | 203 | D-methionine transport system permease protein MetI {Es | 99.92 | |
d2onkc1 | 252 | Molybdate/tungstate transport system permease protein W | 99.73 | |
d3d31c1 | 248 | Sulfate/molybdate ABC transporter, permease protein {Me | 99.67 | |
d2r6gf2 | 244 | Maltose transport system permease protein MalF {Escheri | 99.54 | |
d2r6gg1 | 290 | Maltose transport system permease protein MalG {Escheri | 99.38 |
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
---|
class: Membrane and cell surface proteins and peptides fold: MetI-like superfamily: MetI-like family: MetI-like domain: D-methionine transport system permease protein MetI species: Escherichia coli [TaxId: 562] Probab=99.92 E-value=3.8e-24 Score=163.11 Aligned_cols=190 Identities=25% Similarity=0.357 Sum_probs=155.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 9999999999999999999999999999999-------626424678779999999950146999999999987301210 Q gi|254780171|r 87 TAILVGFVNTFWLAFSGMIPATIIGTLVGAG-------RLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIP 159 (398) Q Consensus 87 ~a~~vGl~NTl~va~~givlatiLG~~iGi~-------RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~ 159 (398) +.++.|+.||+.+++.+.++|+++|+.+|+. +...++.+.+....+++++|.+|..+++++.+.... .. T Consensus 2 ~lll~~~~~tl~is~~~~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~-~~--- 77 (203) T d3dhwa1 2 WLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTR-VI--- 77 (203) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-HT--- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--- T ss_conf 88999999999999999999999999999999998744432008999999999999999999999999998635-54--- Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHH Q ss_conf 34441037203520100035453556700468877889999999999999986431122332045542101035589997 Q gi|254780171|r 160 DHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIA 239 (398) Q Consensus 160 ~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~ 239 (398) T Consensus 78 -------------------------------------------------------------------------------- 77 (203) T d3dhwa1 78 -------------------------------------------------------------------------------- 77 (203) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 65444332210013111268214878999999999997787999999999834636789998968998998889876899 Q gi|254780171|r 240 LKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQA 319 (398) Q Consensus 240 ~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQA 319 (398) .|.. ..+.+.++++++++.+|+++++|+|++++|++|.|||+++|.|++|++|+|++||+ T Consensus 78 ------------------~~~~--~~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~ 137 (203) T d3dhwa1 78 ------------------VGTS--IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEA 137 (203) T ss_dssp ------------------TCCS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHH T ss_pred ------------------HCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf ------------------0454--11999999999986489999999888843620689998869944424188409976 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99974104789999997549999999999999999998313775899999999999999999 Q gi|254780171|r 320 MRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMI 381 (398) Q Consensus 320 lR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~i 381 (398) .+.+++...+++...+|+++++..+|.+|+.....+..++.++..+....+.. .+++...+ T Consensus 138 ~p~i~~~~~~~~~~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~li 198 (203) T d3dhwa1 138 LPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVL-LVILVYLI 198 (203) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSTTCCHHHHHHHHHHHSSCCTTHHHHHHHH-HHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHH T ss_conf 99999999999999999999999997759999999999874028999999999-99999999 |
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
---|
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
---|
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
---|
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 398 | ABC transporter membrane spanning protein (amino a | ||
3dhw_A_ | 217 | (A:) D-methionine transport system permease protei | 1e-13 | |
2r6g_F_269-326_360-453 | 152 | (F:269-326,F:360-453) Maltose transport system per | 2e-07 | |
3d31_C_ | 295 | (C:) Sulfate/molybdate ABC transporter, permease p | 5e-07 | |
2onk_C_69-249 | 181 | (C:69-249) Molybdate/tungstate ABC transporter, pe | 5e-05 | |
2r6g_G_73-244 | 172 | (G:73-244) Maltose transport system permease prote | 0.004 |
>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12}Length = 217 | Back alignment and structure |
---|
Score = 72.3 bits (177), Expect = 1e-13 Identities = 37/205 (18%), Positives = 76/205 (37%), Gaps = 14/205 (6%) Query: 190 FVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249 F FV+G+ + + K + + +P ++L+ Sbjct: 24 GFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMI------- 76 Query: 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRK 309 S + + L+ A FIA +V + L+ +P G +EA+ A+G T + Sbjct: 77 ----PFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQ 132 Query: 310 ATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQ---AIEI 366 R VLLP+A+ ++ T + L+ S++ AVG L +G + Sbjct: 133 IVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTV 192 Query: 367 ILIWMFIYLSLSIMIALFMNRLNAK 391 +++ + + + + + K Sbjct: 193 LVLLVILVYLIQFAGDRIVRAVTRK 217 |
>2r6g_F (F:269-326,F:360-453) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12}Length = 152 | Back alignment and structure |
---|
>3d31_C (C:) Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans}Length = 295 | Back alignment and structure |
---|
>2onk_C (C:69-249) Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus}Length = 181 | Back alignment and structure |
---|
>2r6g_G (G:73-244) Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12}Length = 172 | Back alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 398 | ABC transporter membrane spanning protein (amino acid) | ||
3dhw_A_ | 217 | D-methionine transport system permease protein MET | 99.94 | |
3d31_C_ | 295 | Sulfate/molybdate ABC transporter, permease protei | 99.88 | |
2onk_C_69-249 | 181 | Molybdate/tungstate ABC transporter, permease prot | 99.73 | |
2r6g_F_269-326_360-453 | 152 | Maltose transport system permease protein MALF; AB | 99.55 | |
2r6g_G_73-244 | 172 | Maltose transport system permease protein MALG; AB | 99.52 |
>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} | Back alignment and structure |
---|
Probab=99.94 E-value=5.3e-26 Score=176.77 Aligned_cols=206 Identities=22% Similarity=0.316 Sum_probs=173.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6526999999999999999999999999999999996-------264246787799999999501469999999999873 Q gi|254780171|r 82 DSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-------LSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLS 154 (398) Q Consensus 82 ~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-------lS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~ 154 (398) +++..+.++.++.||+++++.+.++++++|+.+|+.- .-.+..+..+.....+.++.+|.++++.+.+..... T Consensus 2 s~~~~~~l~~~l~~tl~~~~~~~~i~~vig~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217) T 3dhw_A 2 SEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRV 81 (217) T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 87899999999999999999999999999999999999987344320189999999999999999999999999986455 Q ss_pred HCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHH Q ss_conf 01210344410372035201000354535567004688778899999999999999864311223320455421010355 Q gi|254780171|r 155 VLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPT 234 (398) Q Consensus 155 ~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~ 234 (398) ..+ T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (217) T 3dhw_A 82 IVG----------------------------------------------------------------------------- 84 (217) T ss_dssp TTC----------------------------------------------------------------------------- T ss_pred HCC----------------------------------------------------------------------------- T ss_conf 204----------------------------------------------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH Q ss_conf 89997654443322100131112682148789999999999977879999999998346367899989689989988898 Q gi|254780171|r 235 LVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398) Q Consensus 235 l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398) . ...+.+.++++++++.+|+.+++|++++++|++|.|||+++|+|++|++++| T Consensus 85 -------------------------~--~~~~~~~ii~~~~~~~~~i~~~~~~~l~~i~~~~~eaA~~lG~s~~q~~~~v 137 (217) T 3dhw_A 85 -------------------------T--SIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKV 137 (217) T ss_dssp -------------------------C--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHT T ss_pred -------------------------C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHH T ss_conf -------------------------5--3018899898899724689899998888615027788860698742142673 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7689999974104789999997549999999999999999998313775---8999999999999999999999999678 Q gi|254780171|r 315 LLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQA---IEIILIWMFIYLSLSIMIALFMNRLNAK 391 (398) Q Consensus 315 IlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~---~e~~~i~~~~Yl~isl~iS~~~n~~~rr 391 (398) ++||+++.++|++.+.+...+|+++.+..+|.+|+...+.....++++. .....+.++.++++++....+.+++||| T Consensus 138 ~lP~~~p~i~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~~~~rR 217 (217) T 3dhw_A 138 LLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217 (217) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCCHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHCC--------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 09976999999999999999999999999987599999999999750189999999999999999999999999985699 |
>3d31_C (C:) Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} | Back alignment and structure |
---|
>2onk_C (C:69-249) Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} | Back alignment and structure |
---|
>2r6g_F (F:269-326,F:360-453) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} | Back alignment and structure |
---|
>2r6g_G (G:73-244) Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} | Back alignment and structure |
---|