254780171

254780171

ABC transporter membrane spanning protein (amino acid)

GeneID in NCBI database:8209148Locus tag:CLIBASIA_00270
Protein GI in NCBI database:254780171Protein Accession:YP_003064584.1
Gene range:+(52654, 53850)Protein Length:398aa
Gene description:ABC transporter membrane spanning protein (amino acid)
COG prediction:[E] ABC-type amino acid transport system, permease component
KEGG prediction:aapQ; ABC transporter membrane spanning protein (amino acid); K09970 general L-amino acid transport system permease protein
SEED prediction:Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)
Pathway involved in KEGG:ABC transporters [PATH:las02010]
Subsystem involved in SEED:- none -
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMM8 TM-Helix
TOPPRED8 TM-Helix
HMMTOP8 TM-Helix
MEMSAT8 TM-Helix
MEMSAT_SVM8 TM-Helix
PHOBIUS8 TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MIKNARKTVTRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK
ccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
cccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHcccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHEEEcHHHHHHHccHHHHHHHHHHHccHHHHHHccHHHHHHHcHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
MIKNARKTVTRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVynnmeksnlslgigflseragfeidqgivpytsdssyATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVlsvlpipdhsivlpfgmflnnrglsfptltmdtnaKIFVFSFVLGIVLSLFATRLSRHFhektgkalplLYISTFLIFGLPTLVLIALKYQlhfdkpvlgqfnfiggstvspeFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVllpqamrsiippltsqYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK
miknarktvtRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK
MIKNARKTVTRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK
*******************YDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIAL****
MIKNARKTVTRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK
*****RKT*TRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIAL****
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxx
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
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MIKNARKTVTRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK
MIKNARKTVTRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK
MIKNARKTVTRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

IdentityAlignment graphLength Definition E-value
Target398 ABC transporter membrane spanning protein (amino acid)
254780172386 general L-amino acid transport system permease pro 6e-14
254780172386 general L-amino acid transport system permease pro 0.003
254781113226 amino acid ABC transporter (permease) [Candidatus 2e-11
>gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 386 Back     alignment 
 Score = 70.1 bits (170), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 57/82 (69%)

Query: 271 IALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQ 330
           + +S + +A+IAE++R GL ++ +GQ EAA +LGL++ +  RL+++PQ ++ +IP + + 
Sbjct: 254 LGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNT 313

Query: 331 YLNLLKNSSLAVAVGFADLVSV 352
           ++ L K+SSL   +   DL+ +
Sbjct: 314 FIGLFKDSSLISIINMFDLLGI 335
>gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 386 Back     alignment 
 Score = 34.7 bits (78), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 87  TAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIF 146
           T++  G + T  ++F G+I +  +G L+  GR S   ++ + C  ++E+FR +P + V+F
Sbjct: 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLF 230

Query: 147 FLYKSVLSVLPIPD 160
               S++  L +PD
Sbjct: 231 M--ASIMLPLFLPD 242
>gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter asiaticus str. psy62] Length = 226 Back     alignment 
 Score = 61.6 bits (148), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 112/217 (51%), Gaps = 40/217 (18%)

Query: 177 SFPTL-------TMDTNAKIFVFSFVLGIVLSLFATRLSR-------HFHEKTGKALPLL 222
           SFP L       T+      FV S ++G  +++     S        HF+    +  PLL
Sbjct: 12  SFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLL 71

Query: 223 YISTFLIF-GLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFI 281
            +  F+IF GLP + ++       FD                  F+++ I+L+   +A+I
Sbjct: 72  -VQLFVIFYGLPHIGIV-------FDS-----------------FVAIIISLTLNFSAYI 106

Query: 282 AEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLA 341
           +EI+RS +I++P+GQ +A+ A+GLT ++  R ++LPQ + +   PL+S+++++LK++S+A
Sbjct: 107 SEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA 166

Query: 342 VAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLS 378
             +   ++      I++ T Q + I     F+YL L+
Sbjct: 167 STITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILT 203

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

IdentityAlignment graphLength Definition Round E-value
Target398 ABC transporter membrane spanning protein (amino acid)
315122674398 ABC transporter membrane spanning protein (amino acid) 1 1e-175
222148881398 ABC transporter membrane spanning protein (amino acid) 1 1e-113
325292971398 General L-amino acid transport system permease protein 1 1e-111
159184824398 ABC transporter, membrane spanning protein (amino acid) 1 1e-110
116251959400 general L-amino acid transport system permease [Rhizobi 1 1e-108
241204487400 polar amino acid ABC transcriptional regulator inner me 1 1e-106
227821879397 putative amino-acid ABC transporter membrane protein [S 1 1e-106
239831566408 amino acid ABC transporter, permease protein, 3-TM regi 1 1e-103
86357518406 general L-amino acid ABC transporter, permease protein 1 1e-103
153009883397 polar amino acid ABC transporter inner membrane subunit 1 1e-103
>gi|315122674|ref|YP_004063163.1| ABC transporter membrane spanning protein (amino acid) [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 398 Back     alignment and organism information
 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 301/398 (75%), Positives = 347/398 (87%)

Query: 1   MIKNARKTVTRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLG 60
           M+KN +      F  MKFLYD+R+ +I +Q ++  ++T++ LW VNNV++NM KSNLSLG
Sbjct: 1   MMKNIKSMFNHNFCEMKFLYDVRIRSILIQAVILSIVTMVILWLVNNVHHNMVKSNLSLG 60

Query: 61  IGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLS 120
           IGFL ERAGFEIDQGI+PYTSDSSYA AI+VGF NTF +AF+G+IPATIIG LVG GRLS
Sbjct: 61  IGFLKERAGFEIDQGIIPYTSDSSYAMAIVVGFSNTFMVAFAGIIPATIIGVLVGTGRLS 120

Query: 121 ANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPT 180
           +NKLV+WICRVYVEVFRNIPPLVVIFF Y+SVLS+LPIP+HSI LP G+FLNNRG SFPT
Sbjct: 121 SNKLVSWICRVYVEVFRNIPPLVVIFFWYRSVLSILPIPEHSISLPLGIFLNNRGFSFPT 180

Query: 181 LTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIAL 240
           L MD NAKI +FSFVLGI LS+F+ +LSR FH KTG+ LPL Y++  LI GLP LVL+AL
Sbjct: 181 LIMDINAKIVLFSFVLGIALSIFSAKLSRQFHMKTGQTLPLFYVAVLLILGLPMLVLLAL 240

Query: 241 KYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAA 300
            +QL+FDKPVLG+FNF GG T+ PEFMSLYIALSCYTA+FIAEI+R GLI+V RGQMEAA
Sbjct: 241 NFQLYFDKPVLGKFNFTGGCTIGPEFMSLYIALSCYTASFIAEIIRLGLISVSRGQMEAA 300

Query: 301 IALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQT 360
           IALGLT  KATRLV+LPQAMR IIPPLTSQYLNLLKNSSLAVAVGFADLVSVGG+IINQT
Sbjct: 301 IALGLTPGKATRLVILPQAMRIIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGSIINQT 360

Query: 361 GQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK 398
           GQAIEIILIWMFIYLSLSIMI+LFMN LN K+ALKE++
Sbjct: 361 GQAIEIILIWMFIYLSLSIMISLFMNWLNTKVALKERR 398



Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|222148881|ref|YP_002549838.1| ABC transporter membrane spanning protein (amino acid) [Agrobacterium vitis S4] Length = 398 Back     alignment and organism information
>gi|325292971|ref|YP_004278835.1| General L-amino acid transport system permease protein aapQ [Agrobacterium sp. H13-3] Length = 398 Back     alignment and organism information
>gi|159184824|ref|NP_354576.2| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium tumefaciens str. C58] Length = 398 Back     alignment and organism information
>gi|116251959|ref|YP_767797.1| general L-amino acid transport system permease [Rhizobium leguminosarum bv. viciae 3841] Length = 400 Back     alignment and organism information
>gi|241204487|ref|YP_002975583.1| polar amino acid ABC transcriptional regulator inner membrane protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 400 Back     alignment and organism information
>gi|227821879|ref|YP_002825849.1| putative amino-acid ABC transporter membrane protein [Sinorhizobium fredii NGR234] Length = 397 Back     alignment and organism information
>gi|239831566|ref|ZP_04679895.1| amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family [Ochrobactrum intermedium LMG 3301] Length = 408 Back     alignment and organism information
>gi|86357518|ref|YP_469410.1| general L-amino acid ABC transporter, permease protein [Rhizobium etli CFN 42] Length = 406 Back     alignment and organism information
>gi|153009883|ref|YP_001371098.1| polar amino acid ABC transporter inner membrane subunit [Ochrobactrum anthropi ATCC 49188] Length = 397 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLASTagainst CDD database part II

IdentityAlignment graphLength Definition E-value
Target398 ABC transporter membrane spanning protein (amino acid)
COG0765222 COG0765, HisM, ABC-type amino acid transport system, pe 4e-31
COG4215230 COG4215, ArtQ, ABC-type arginine transport system, perm 2e-18
COG4160228 COG4160, ArtM, ABC-type arginine/histidine transport sy 6e-18
TIGR03003212 TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC tra 2e-16
PRK09494219 PRK09494, glnP, glutamine ABC transporter permease prot 2e-16
PRK15100220 PRK15100, PRK15100, amino acid ABC transporter permease 2e-16
PRK11123238 PRK11123, PRK11123, arginine transporter permease subun 5e-12
cd06261190 cd06261, TM_PBP2, Transmembrane subunit (TM) found in P 6e-09
PRK11122222 PRK11122, artM, arginine transporter permease subunit A 1e-04
PRK15107224 PRK15107, PRK15107, glutamate/aspartate transport syste 8e-18
TIGR03004214 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC tra 2e-13
PRK15069234 PRK15069, PRK15069, histidine/lysine/arginine/ornithine 6e-06
pfam00528183 pfam00528, BPD_transp_1, Binding-protein-dependent tran 1e-04
TIGR0172699 TIGR01726, HEQRo_perm_3TM, amine acid ABC transporter, 6e-11
COG0765222 COG0765, HisM, ABC-type amino acid transport system, pe 2e-10
COG4215230 COG4215, ArtQ, ABC-type arginine transport system, perm 2e-06
COG4160228 COG4160, ArtM, ABC-type arginine/histidine transport sy 1e-05
PRK15100220 PRK15100, PRK15100, amino acid ABC transporter permease 4e-05
TIGR03004214 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC tra 4e-05
TIGR03003212 TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC tra 6e-05
PRK15107224 PRK15107, PRK15107, glutamate/aspartate transport syste 1e-04
PRK09494219 PRK09494, glnP, glutamine ABC transporter permease prot 0.001
PRK15135228 PRK15135, PRK15135, histidine/lysine/arginine/ornithine 0.002
PRK15135228 PRK15135, PRK15135, histidine/lysine/arginine/ornithine 7e-08
COG2011222 COG2011, AbcD, ABC-type metal ion transport system, per 3e-06
PRK10782217 PRK10782, PRK10782, DL-methionine transporter permease 4e-05
TIGR02138295 TIGR02138, phosphate_pstC, phosphate ABC transporter, p 6e-04
COG0573310 COG0573, PstC, ABC-type phosphate transport system, per 0.003
COG4597397 COG4597, BatB, ABC-type amino acid transport system, pe 1e-112
>gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|33942 COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|33906 COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|132048 TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC transporter, permease protein EhuD Back     alignment and domain information
>gnl|CDD|181907 PRK09494, glnP, glutamine ABC transporter permease protein; Reviewed Back     alignment and domain information
>gnl|CDD|185055 PRK15100, PRK15100, amino acid ABC transporter permease; Provisional Back     alignment and domain information
>gnl|CDD|182979 PRK11123, PRK11123, arginine transporter permease subunit ArtQ; Provisional Back     alignment and domain information
>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs Back     alignment and domain information
>gnl|CDD|182978 PRK11122, artM, arginine transporter permease subunit ArtM; Provisional Back     alignment and domain information
>gnl|CDD|185062 PRK15107, PRK15107, glutamate/aspartate transport system permease GltK; Provisional Back     alignment and domain information
>gnl|CDD|132049 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC transporter, permease protein EhuC Back     alignment and domain information
>gnl|CDD|185029 PRK15069, PRK15069, histidine/lysine/arginine/ornithine ABC transporter permease HisM; Provisional Back     alignment and domain information
>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system inner membrane component Back     alignment and domain information
>gnl|CDD|130787 TIGR01726, HEQRo_perm_3TM, amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family Back     alignment and domain information
>gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|33942 COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|33906 COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|185055 PRK15100, PRK15100, amino acid ABC transporter permease; Provisional Back     alignment and domain information
>gnl|CDD|132049 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC transporter, permease protein EhuC Back     alignment and domain information
>gnl|CDD|132048 TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC transporter, permease protein EhuD Back     alignment and domain information
>gnl|CDD|185062 PRK15107, PRK15107, glutamate/aspartate transport system permease GltK; Provisional Back     alignment and domain information
>gnl|CDD|181907 PRK09494, glnP, glutamine ABC transporter permease protein; Reviewed Back     alignment and domain information
>gnl|CDD|185089 PRK15135, PRK15135, histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Provisional Back     alignment and domain information
>gnl|CDD|185089 PRK15135, PRK15135, histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Provisional Back     alignment and domain information
>gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|182726 PRK10782, PRK10782, DL-methionine transporter permease subunit; Provisional Back     alignment and domain information
>gnl|CDD|162724 TIGR02138, phosphate_pstC, phosphate ABC transporter, permease protein PstC Back     alignment and domain information
>gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|34232 COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

IdentityAlignment graphLength Definition Probability
Target 398 ABC transporter membrane spanning protein (amino acid)
COG4597397 BatB ABC-type amino acid transport system, permease com 100.0
PRK11275319 pstC phosphate transporter permease subunit; Provisiona 99.73
PRK10160275 taurine transporter subunit; Provisional 99.63
COG0573310 PstC ABC-type phosphate transport system, permease comp 99.52
COG0600258 TauC ABC-type nitrate/sulfonate/bicarbonate transport s 99.41
TIGR02138317 phosphate_pstC phosphate ABC transporter, permease prot 99.33
COG4168321 SapB ABC-type antimicrobial peptide transport system, p 96.13
COG0765222 HisM ABC-type amino acid transport system, permease com 100.0
PRK11123238 arginine transporter permease subunit ArtQ; Provisional 100.0
PRK09494219 glnP glutamine ABC transporter permease protein; Review 100.0
PRK11122222 artM arginine transporter permease subunit ArtM; Provis 100.0
TIGR03003218 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, pe 100.0
COG4160228 ArtM ABC-type arginine/histidine transport system, perm 100.0
TIGR03004216 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, pe 100.0
COG4215230 ArtQ ABC-type arginine transport system, permease compo 100.0
PRK10782217 DL-methionine transporter permease subunit; Provisional 100.0
PRK11602291 cysW sulfate/thiosulfate transporter permease subunit; 99.65
COG2011222 AbcD ABC-type metal ion transport system, permease comp 99.64
PRK09421229 modB molybdate ABC transporter permease protein; Review 99.61
COG3639283 ABC-type phosphate/phosphonate transport system, permea 99.59
TIGR03226312 PhnU 2-aminoethylphosphonate ABC transporter, permease 99.58
PRK11365263 ssuC alkanesulfonate transporter permease subunit; Prov 99.57
PRK10683317 putrescine transporter subunit: membrane component of A 99.45
PRK09881296 ATP-dependent peptide transporter membrane subunit; Pro 99.25
COG1175295 UgpA ABC-type sugar transport systems, permease compone 99.19
PRK10914339 dipeptide transporter permease DppB; Provisional 99.16
PRK09471306 oppB oligopeptide transporter permease; Reviewed 99.05
PRK10352314 nickel transporter permease NikB; Provisional 99.02
COG1173289 DppC ABC-type dipeptide/oligopeptide/nickel transport s 98.91
COG0601317 DppB ABC-type dipeptide/oligopeptide/nickel transport s 98.85
TIGR01097192 3A0109s02M phosphonate ABC transporter, permease protei 98.36
TIGR0172699 HEQRo_perm_3TM amino acid ABC transporter, permease pro 99.95
cd06261190 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic 99.71
COG0581292 PstA ABC-type phosphate transport system, permease comp 99.47
TIGR03416267 ABC_choXWV_perm choline ABC transporter, permease prote 99.39
CHL00187235 cysT sulfate transport protein; Provisional 99.18
PRK10913300 dipeptide transporter; Provisional 99.17
PRK10417272 nikC nickel transporter permease NikC; Provisional 99.09
PRK10999520 malF maltose transporter membrane protein; Provisional 98.86
PRK10971277 sulfate/thiosulfate transporter subunit; Provisional 99.65
PRK09497285 potB spermidine/putrescine ABC transporter membrane pro 99.61
pfam00528183 BPD_transp_1 Binding-protein-dependent transport system 99.57
PRK09500257 potC spermidine/putrescine ABC transporter membrane pro 99.56
TIGR03255272 PhnV 2-aminoethylphosphonate ABC transport system, memb 99.51
PRK10592281 putrescine transporter subunit: membrane component of A 99.43
COG1178 540 ThiP ABC-type Fe3+ transport system, permease component 99.41
TIGR03262546 PhnU2 putative 2-aminoethylphosphonate ABC transport sy 99.38
PRK09433536 thiP thiamine transporter membrane protein; Reviewed 99.37
COG1177267 PotC ABC-type spermidine/putrescine transport system, p 99.37
COG1174221 OpuBB ABC-type proline/glycine betaine transport system 99.33
PRK09433 536 thiP thiamine transporter membrane protein; Reviewed 99.22
COG1178540 ThiP ABC-type Fe3+ transport system, permease component 99.21
PRK10561280 glycerol-3-phosphate transporter permease; Provisional 99.17
COG0555274 CysU ABC-type sulfate transport system, permease compon 98.94
TIGR02141212 modB_ABC molybdate ABC transporter, permease protein; I 98.83
COG4149225 ModC ABC-type molybdate transport system, permease comp 98.34
COG4176290 ProW ABC-type proline/glycine betaine transport system, 98.21
COG4209309 LplB ABC-type polysaccharide transport system, permease 97.77
TIGR02139265 permease_CysT sulfate ABC transporter, permease protein 97.24
TIGR00969280 3a0106s02 sulfate ABC transporter, permease protein; In 97.15
COG4132282 ABC-type uncharacterized transport system, permease com 96.5
PRK11268292 pstA phosphate transporter permease subunit; Provisiona 99.45
TIGR00974302 3a0107s02c phosphate ABC transporter, permease protein 99.03
TIGR03262 546 PhnU2 putative 2-aminoethylphosphonate ABC transport sy 99.31
PRK10998296 malG maltose transporter permease; Provisional 99.05
COG1176287 PotB ABC-type spermidine/putrescine transport system, p 98.75
PRK10973281 glycerol-3-phosphate transporter membrane protein; Prov 98.44
TIGR01581226 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR0 98.4
COG0395281 UgpE ABC-type sugar transport system, permease componen 97.92
COG3833282 MalG ABC-type maltose transport systems, permease compo 97.11
COG4986523 ABC-type anion transport system, duplicated permease co 95.6
pfam03649250 UPF0014 Uncharacterized protein family (UPF0014). 93.86
PRK10952354 glycine betaine transporter membrane protein; Provision 99.06
COG4208287 CysW ABC-type sulfate transport system, permease compon 96.94
COG4590733 ABC-type uncharacterized transport system, permease com 96.71
TIGR02140275 permease_CysW sulfate ABC transporter, permease protein 96.33
COG4239341 ABC-type uncharacterized transport system, permease com 95.57
TIGR02789315 nickel_nikB nickel ABC transporter, permease subunit Ni 91.76
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11275 pstC phosphate transporter permease subunit; Provisional Back     alignment and domain information
>PRK10160 taurine transporter subunit; Provisional Back     alignment and domain information
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC; InterPro: IPR011864 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] Back     alignment and domain information
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11123 arginine transporter permease subunit ArtQ; Provisional Back     alignment and domain information
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed Back     alignment and domain information
>PRK11122 artM arginine transporter permease subunit ArtM; Provisional Back     alignment and domain information
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD; InterPro: IPR014341 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC; InterPro: IPR014342 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4215 ArtQ ABC-type arginine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10782 DL-methionine transporter permease subunit; Provisional Back     alignment and domain information
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional Back     alignment and domain information
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed Back     alignment and domain information
>COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein Back     alignment and domain information
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional Back     alignment and domain information
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional Back     alignment and domain information
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional Back     alignment and domain information
>COG1175 UgpA ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10914 dipeptide transporter permease DppB; Provisional Back     alignment and domain information
>PRK09471 oppB oligopeptide transporter permease; Reviewed Back     alignment and domain information
>PRK10352 nickel transporter permease NikB; Provisional Back     alignment and domain information
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system Back     alignment and domain information
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems Back     alignment and domain information
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs Back     alignment and domain information
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein Back     alignment and domain information
>CHL00187 cysT sulfate transport protein; Provisional Back     alignment and domain information
>PRK10913 dipeptide transporter; Provisional Back     alignment and domain information
>PRK10417 nikC nickel transporter permease NikC; Provisional Back     alignment and domain information
>PRK10999 malF maltose transporter membrane protein; Provisional Back     alignment and domain information
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional Back     alignment and domain information
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed Back     alignment and domain information
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component Back     alignment and domain information
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed Back     alignment and domain information
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV Back     alignment and domain information
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional Back     alignment and domain information
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein Back     alignment and domain information
>PRK09433 thiP thiamine transporter membrane protein; Reviewed Back     alignment and domain information
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism] Back     alignment and domain information
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09433 thiP thiamine transporter membrane protein; Reviewed Back     alignment and domain information
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10561 glycerol-3-phosphate transporter permease; Provisional Back     alignment and domain information
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02141 modB_ABC molybdate ABC transporter, permease protein; InterPro: IPR011867 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system Back     alignment and domain information
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>PRK11268 pstA phosphate transporter permease subunit; Provisional Back     alignment and domain information
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system Back     alignment and domain information
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein Back     alignment and domain information
>PRK10998 malG maltose transporter permease; Provisional Back     alignment and domain information
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional Back     alignment and domain information
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR006469 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>pfam03649 UPF0014 Uncharacterized protein family (UPF0014) Back     alignment and domain information
>PRK10952 glycine betaine transporter membrane protein; Provisional Back     alignment and domain information
>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

No homologous structure with e-value below 0.005

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

IdentityAlignment graphLength Definition E-value
Target398 ABC transporter membrane spanning protein (amino acid)
3dhw_A217 D-methionine transport system permease protein METI; AB 1e-07
3d31_C295 Sulfate/molybdate ABC transporter, permease protein; AT 1e-06
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 Length = 217 Back     alignment and structure
 Score = 53.2 bits (127), Expect = 1e-07
 Identities = 39/203 (19%), Positives = 78/203 (38%), Gaps = 12/203 (5%)

Query: 190 FVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249
             F FV+G+ + +              K    +     +   +P ++L+           
Sbjct: 24  GFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIV 83

Query: 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRK 309
                             +  + L+   A FIA +V + L+ +P G +EA+ A+G T  +
Sbjct: 84  GTS-----------IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQ 132

Query: 310 ATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILI 369
             R VLLP+A+  ++   T   + L+  S++  AVG   L  +G         A  +  +
Sbjct: 133 IVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTV 192

Query: 370 WMFIYLSLSIMIALFMNRLNAKI 392
            + + + L  +I    +R+   +
Sbjct: 193 -LVLLVILVYLIQFAGDRIVRAV 214
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 Length = 295 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

IdentityAlignment graphLength Definition Probability
Target398 ABC transporter membrane spanning protein (amino acid)
3dhw_A217 D-methionine transport system permease protein METI; AB 99.94
3d31_C295 Sulfate/molybdate ABC transporter, permease protein; AT 99.86
2onk_C284 Molybdate/tungstate ABC transporter, permease protein; 99.84
2r6g_F514 Maltose transport system permease protein MALF; ABC tra 99.7
2r6g_G296 Maltose transport system permease protein MALG; ABC tra 99.33
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 Back     alignment and structure
Probab=99.94  E-value=2.3e-26  Score=178.05  Aligned_cols=206  Identities=23%  Similarity=0.332  Sum_probs=162.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6526999999999999999999999999999999996-------264246787799999999501469999999999873
Q gi|254780171|r   82 DSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-------LSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLS  154 (398)
Q Consensus        82 ~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-------lS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~  154 (398)
                      +|+..+-++-|+.||+++++.+.++++++|+.+|+..       ...+..+.+....+++++|++|.++.+++..... .
T Consensus         2 s~~~~~l~l~~~~~Tl~~a~~~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~-~   80 (217)
T 3dhw_A            2 SEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFT-R   80 (217)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHH-H
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_conf             878999999999999999999999999999999999999864443200899999999999999999999999999999-9


Q ss_pred             HCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHH
Q ss_conf             01210344410372035201000354535567004688778899999999999999864311223320455421010355
Q gi|254780171|r  155 VLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPT  234 (398)
Q Consensus       155 ~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~  234 (398)
                      ..                                                                              
T Consensus        81 ~~------------------------------------------------------------------------------   82 (217)
T 3dhw_A           81 VI------------------------------------------------------------------------------   82 (217)
T ss_dssp             HT------------------------------------------------------------------------------
T ss_pred             HH------------------------------------------------------------------------------
T ss_conf             99------------------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             89997654443322100131112682148789999999999977879999999998346367899989689989988898
Q gi|254780171|r  235 LVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV  314 (398)
Q Consensus       235 l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V  314 (398)
                                       .      |..  ..+.+.++++++++..|+.+.+|+|++++|++|.|||+++|.|++|++|+|
T Consensus        83 -----------------~------~~~--~~~~~~ii~~~~~~~~~~~~~~~~~l~~i~~~~~eAA~~lGas~~q~f~~v  137 (217)
T 3dhw_A           83 -----------------V------GTS--IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKV  137 (217)
T ss_dssp             -----------------T------CCS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHT
T ss_pred             -----------------H------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf             -----------------8------612--369999999999867999999999998589899999871898989996974


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             768999997410478999999754999999999999999999831377589999999999999999999999996787
Q gi|254780171|r  315 LLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKI  392 (398)
Q Consensus       315 IlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~  392 (398)
                      ++||+.+.+++++.+.++..+|+++++..+|.+|+...+.....+.++.-. .......+.++...+....++++||+
T Consensus       138 ilP~~~p~ii~~~~~~~~~~i~~~~i~~~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~  214 (217)
T 3dhw_A          138 LLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATV-MNTVLVLLVILVYLIQFAGDRIVRAV  214 (217)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCCHHHHHHHHHHHSSCCTTH-HHHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             199789999999999999999999999999887999999999998600899-99999999999999999999999975
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 Back     alignment and structure
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1 Back     alignment and structure
>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F Back     alignment and structure
>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: f.58.1.1 PDB: 3fh6_G Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

IdentityAlignment graphLength Definition E-value
Target 398 ABC transporter membrane spanning protein (amino acid)
d3dhwa1203 f.58.1.1 (A:6-208) D-methionine transport system permea 2e-08
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Length = 203 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: D-methionine transport system permease protein MetI
species: Escherichia coli [TaxId: 562]

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 11/194 (5%)

Query: 190 FVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249
             F FV+G+ + +              K    +     +   +P ++L+           
Sbjct: 19  GFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIV 78

Query: 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRK 309
                             +  + L+   A FIA +V + L+ +P G +EA+ A+G T  +
Sbjct: 79  GTS-----------IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQ 127

Query: 310 ATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILI 369
             R VLLP+A+  ++   T   + L+  S++  AVG   L  +G         A  +  +
Sbjct: 128 IVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTV 187

Query: 370 WMFIYLSLSIMIAL 383
            + + + + ++   
Sbjct: 188 LVLLVILVYLIQFA 201

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

IdentityAlignment graphLength Definition Probability
Target398 ABC transporter membrane spanning protein (amino acid)
d3dhwa1203 D-methionine transport system permease protein MetI {Es 99.92
d2onkc1252 Molybdate/tungstate transport system permease protein W 99.73
d3d31c1248 Sulfate/molybdate ABC transporter, permease protein {Me 99.67
d2r6gf2244 Maltose transport system permease protein MalF {Escheri 99.54
d2r6gg1290 Maltose transport system permease protein MalG {Escheri 99.38
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: D-methionine transport system permease protein MetI
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.8e-24  Score=163.11  Aligned_cols=190  Identities=25%  Similarity=0.357  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             9999999999999999999999999999999-------626424678779999999950146999999999987301210
Q gi|254780171|r   87 TAILVGFVNTFWLAFSGMIPATIIGTLVGAG-------RLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIP  159 (398)
Q Consensus        87 ~a~~vGl~NTl~va~~givlatiLG~~iGi~-------RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~  159 (398)
                      +.++.|+.||+.+++.+.++|+++|+.+|+.       +...++.+.+....+++++|.+|..+++++.+.... ..   
T Consensus         2 ~lll~~~~~tl~is~~~~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~-~~---   77 (203)
T d3dhwa1           2 WLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTR-VI---   77 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-HT---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---
T ss_conf             88999999999999999999999999999999998744432008999999999999999999999999998635-54---


Q ss_pred             HHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHH
Q ss_conf             34441037203520100035453556700468877889999999999999986431122332045542101035589997
Q gi|254780171|r  160 DHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIA  239 (398)
Q Consensus       160 ~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~  239 (398)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (203)
T d3dhwa1          78 --------------------------------------------------------------------------------   77 (203)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             65444332210013111268214878999999999997787999999999834636789998968998998889876899
Q gi|254780171|r  240 LKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQA  319 (398)
Q Consensus       240 ~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQA  319 (398)
                                        .|..  ..+.+.++++++++.+|+++++|+|++++|++|.|||+++|.|++|++|+|++||+
T Consensus        78 ------------------~~~~--~~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~  137 (203)
T d3dhwa1          78 ------------------VGTS--IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEA  137 (203)
T ss_dssp             ------------------TCCS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHH
T ss_pred             ------------------HCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             ------------------0454--11999999999986489999999888843620689998869944424188409976


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99974104789999997549999999999999999998313775899999999999999999
Q gi|254780171|r  320 MRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMI  381 (398)
Q Consensus       320 lR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~i  381 (398)
                      .+.+++...+++...+|+++++..+|.+|+.....+..++.++..+....+.. .+++...+
T Consensus       138 ~p~i~~~~~~~~~~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~li  198 (203)
T d3dhwa1         138 LPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVL-LVILVYLI  198 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSTTCCHHHHHHHHHHHSSCCTTHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHH
T ss_conf             99999999999999999999999997759999999999874028999999999-99999999
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

IdentityAlignment graphLength Definition E-value
Target 398 ABC transporter membrane spanning protein (amino a
3dhw_A_217 (A:) D-methionine transport system permease protei 1e-13
2r6g_F_269-326_360-453152 (F:269-326,F:360-453) Maltose transport system per 2e-07
3d31_C_295 (C:) Sulfate/molybdate ABC transporter, permease p 5e-07
2onk_C_69-249181 (C:69-249) Molybdate/tungstate ABC transporter, pe 5e-05
2r6g_G_73-244172 (G:73-244) Maltose transport system permease prote 0.004
>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12}Length = 217 Back     alignment and structure
 Score = 72.3 bits (177), Expect = 1e-13
 Identities = 37/205 (18%), Positives = 76/205 (37%), Gaps = 14/205 (6%)

Query: 190 FVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249
             F FV+G+ + +              K    +     +   +P ++L+           
Sbjct: 24  GFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMI------- 76

Query: 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRK 309
                        S    +  + L+   A FIA +V + L+ +P G +EA+ A+G T  +
Sbjct: 77  ----PFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQ 132

Query: 310 ATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQ---AIEI 366
             R VLLP+A+  ++   T   + L+  S++  AVG   L  +G               +
Sbjct: 133 IVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTV 192

Query: 367 ILIWMFIYLSLSIMIALFMNRLNAK 391
           +++ + +   +       +  +  K
Sbjct: 193 LVLLVILVYLIQFAGDRIVRAVTRK 217
>2r6g_F (F:269-326,F:360-453) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12}Length = 152 Back     alignment and structure
>3d31_C (C:) Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans}Length = 295 Back     alignment and structure
>2onk_C (C:69-249) Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus}Length = 181 Back     alignment and structure
>2r6g_G (G:73-244) Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12}Length = 172 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

IdentityAlignment graphLength Definition Probability
Target398 ABC transporter membrane spanning protein (amino acid)
3dhw_A_217 D-methionine transport system permease protein MET 99.94
3d31_C_295 Sulfate/molybdate ABC transporter, permease protei 99.88
2onk_C_69-249181 Molybdate/tungstate ABC transporter, permease prot 99.73
2r6g_F_269-326_360-453152 Maltose transport system permease protein MALF; AB 99.55
2r6g_G_73-244172 Maltose transport system permease protein MALG; AB 99.52
>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} Back     alignment and structure
Probab=99.94  E-value=5.3e-26  Score=176.77  Aligned_cols=206  Identities=22%  Similarity=0.316  Sum_probs=173.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6526999999999999999999999999999999996-------264246787799999999501469999999999873
Q gi|254780171|r   82 DSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-------LSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLS  154 (398)
Q Consensus        82 ~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-------lS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~  154 (398)
                      +++..+.++.++.||+++++.+.++++++|+.+|+.-       .-.+..+..+.....+.++.+|.++++.+.+.....
T Consensus         2 s~~~~~~l~~~l~~tl~~~~~~~~i~~vig~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
T 3dhw_A            2 SEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRV   81 (217)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87899999999999999999999999999999999999987344320189999999999999999999999999986455


Q ss_pred             HCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHH
Q ss_conf             01210344410372035201000354535567004688778899999999999999864311223320455421010355
Q gi|254780171|r  155 VLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPT  234 (398)
Q Consensus       155 ~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~  234 (398)
                      ..+                                                                             
T Consensus        82 ~~~-----------------------------------------------------------------------------   84 (217)
T 3dhw_A           82 IVG-----------------------------------------------------------------------------   84 (217)
T ss_dssp             TTC-----------------------------------------------------------------------------
T ss_pred             HCC-----------------------------------------------------------------------------
T ss_conf             204-----------------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             89997654443322100131112682148789999999999977879999999998346367899989689989988898
Q gi|254780171|r  235 LVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV  314 (398)
Q Consensus       235 l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V  314 (398)
                                               .  ...+.+.++++++++.+|+.+++|++++++|++|.|||+++|+|++|++++|
T Consensus        85 -------------------------~--~~~~~~~ii~~~~~~~~~i~~~~~~~l~~i~~~~~eaA~~lG~s~~q~~~~v  137 (217)
T 3dhw_A           85 -------------------------T--SIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKV  137 (217)
T ss_dssp             -------------------------C--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHT
T ss_pred             -------------------------C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHH
T ss_conf             -------------------------5--3018899898899724689899998888615027788860698742142673


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7689999974104789999997549999999999999999998313775---8999999999999999999999999678
Q gi|254780171|r  315 LLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQA---IEIILIWMFIYLSLSIMIALFMNRLNAK  391 (398)
Q Consensus       315 IlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~---~e~~~i~~~~Yl~isl~iS~~~n~~~rr  391 (398)
                      ++||+++.++|++.+.+...+|+++.+..+|.+|+...+.....++++.   .....+.++.++++++....+.+++|||
T Consensus       138 ~lP~~~p~i~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~~~~rR  217 (217)
T 3dhw_A          138 LLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK  217 (217)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCCHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             09976999999999999999999999999987599999999999750189999999999999999999999999985699
>3d31_C (C:) Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} Back     alignment and structure
>2onk_C (C:69-249) Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} Back     alignment and structure
>2r6g_F (F:269-326,F:360-453) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} Back     alignment and structure
>2r6g_G (G:73-244) Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} Back     alignment and structure