HHsearch alignment for GI: 254780171 and conserved domain: COG0765
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].
Probab=100.00 E-value=0 Score=443.07 Aligned_cols=210 Identities=39% Similarity=0.674 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 52699999999999999999999999999999999626424678779999999950146999999999987301210344
Q gi|254780171|r 83 SSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHS 162 (398)
Q Consensus 83 ~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~ 162 (398)
T Consensus 12 ~~~~~~ll~G~~~Tl~ls~~~~~~g~vlG~~la~~r~s~~~~l~~~~~~Yv~~~RgtPlLvqlf~~yfg~lp~~------ 85 (222)
T COG0765 12 LDYLPFLLKGLLVTLLLTLLSIVLGLVLGLLLALMRLSGNKPLRWLARAYVEIFRGTPLLVQLFFIYFGLLPLL------ 85 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------
T ss_conf 65589999999999999999999999999999999977847899999998877617419999999999857984------
Q ss_pred HHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf 41037203520100035453556700468877889999999999999986431122332045542101035589997654
Q gi|254780171|r 163 IVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKY 242 (398)
Q Consensus 163 ~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~ 242 (398)
T Consensus 86 -------------------------------------------------------------------------------- 85 (222)
T COG0765 86 -------------------------------------------------------------------------------- 85 (222)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 44332210013111268214878999999999997787999999999834636789998968998998889876899999
Q gi|254780171|r 243 QLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRS 322 (398)
Q Consensus 243 ~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~ 322 (398)
T Consensus 86 ----------------gi~~~-~~~aavial~l~~~AY~aEi~R~GI~sV~kGQ~EAA~aLGls~~q~~r~IIlPQAlr~ 148 (222)
T COG0765 86 ----------------GIELD-PFTAAVIALSLNSGAYLAEIVRAGIQSVPKGQWEAARALGLTYWQTMRYVILPQALRV 148 (222)
T ss_pred ----------------CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHEEHHHHHHH
T ss_conf ----------------46777-9999999999999999999999999618886899999859998668663002356998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7410478999999754999999999999999999831377589999999999999999999999996787430
Q gi|254780171|r 323 IIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALK 395 (398)
Q Consensus 323 ~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~ 395 (398)
T Consensus 149 ~lP~l~n~~i~liK~TSl~svIgv~EL~~~a~~i~~~t~~~~e~~~~~a~iY~~l~~~ls~~~~~lErr~~~~ 221 (222)
T COG0765 149 ILPPLGNQFISLIKDTSLVSVIGVVELTRAAQIIAARTFRPFEVYLLAALIYLILCLPLSLLSRRLERRLARY 221 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6517689999999982999999899999999999986651799999999999999999999999999885237