HHsearch alignment for GI: 254780171 and conserved domain: COG4590
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=96.71 E-value=0.042 Score=31.54 Aligned_cols=311 Identities=16% Similarity=0.197 Sum_probs=149.0
Q ss_pred HHHHCCCCCCCHHCCCCCCCCCCCCCCCC-----CCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC
Q ss_conf 99972887781213889984437542235-----6865269999--99999999999999999999999999996-2642
Q gi|254780171|r 51 NMEKSNLSLGIGFLSERAGFEIDQGIVPY-----TSDSSYATAI--LVGFVNTFWLAFSGMIPATIIGTLVGAGR-LSAN 122 (398)
Q Consensus 51 nl~~~gi~~gf~FL~~~agf~I~~~~i~y-----~~~~sy~~a~--~vGl~NTl~va~~givlatiLG~~iGi~R-lS~N 122 (398)
T Consensus 384 ~l~Nr~PeiswsaLWqkvWYEsYpeP-ayVWQStaAt~dfeaKfSL~Pi~FGTLKAA~yAMlfA~PlAvagAiYTAYFM~ 462 (733)
T COG4590 384 QLENRNPEISWSALWQKVWYESYPEP-AYVWQSTAATDDFEAKFSLVPIAFGTLKAAAYAMLFAMPLAVAGAIYTAYFMT 462 (733)
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCCC-HHEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 71589987448986666664238984-02231144454444432340000446899999999985899998999999537
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 46787799999999501469999999999873012103444103720352010003545355670046887788999999
Q gi|254780171|r 123 KLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSL 202 (398)
Q Consensus 123 ~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~ 202 (398)
T Consensus 463 p~mRRvVKPtIElMeAlPTViiGf~--AGlwl-AP~vE~---------------hL------pgvl~L~lLlpl~ill~G 518 (733)
T COG4590 463 PSMRRVVKPTIELMEALPTVIIGFL--AGLWL-APFVES---------------HL------PGVLALMLLLPLSILLLG 518 (733)
T ss_pred HHHHHHHCCHHHHHHHCCHHHHHHH--HHHHH-HHHHHH---------------HH------HHHHHHHHHHHHHHHHHH
T ss_conf 7564110008999753318899998--87766-677764---------------33------699999998678999997
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--------HHHHHHHHHHH
Q ss_conf 9999999986431122332045542101035589997654443322100131112682148--------78999999999
Q gi|254780171|r 203 FATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVS--------PEFMSLYIALS 274 (398)
Q Consensus 203 ~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~--------p~f~a~~iaL~ 274 (398)
T Consensus 519 ~~w--s-RLp~~~~~~lPaGW~a~iLiPV~l~~galaL-----wlsp~Le~~~fggdlr~wL~~d~~~YDQRNALvVG~A 590 (733)
T COG4590 519 FIW--S-RLPKAWLRRLPAGWHALILIPVLLGIGALAL-----WLSPELENALFGGDLRVWLAQDGIGYDQRNALVVGFA 590 (733)
T ss_pred HHH--H-HCCHHHHCCCCCCCHHHHHHHHHHHHHHHHH-----HHCHHHHHHHHCCCHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 777--6-4508773569876234688899999879998-----7174766667266377686524777232444233420
Q ss_pred HHHH--HHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------H--HHHHHHHHHH
Q ss_conf 9977--87999999999834636789998968998998889876899999741047899--------9--9997549999
Q gi|254780171|r 275 CYTA--AFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQY--------L--NLLKNSSLAV 342 (398)
Q Consensus 275 l~ta--AyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~--------i--~l~K~SSLa~ 342 (398)
T Consensus 591 MGFAvIP~IFsiAEDAiFSVP~sLs~GSLALGATPWQTL~~VVlltAspGIFSAiMiG~GRAVGETMIVLMATGNtP~~~ 670 (733)
T COG4590 591 MGFAVIPTIFSIAEDAIFSVPKSLSDGSLALGATPWQTLIYVVLLTASPGIFSAIMIGLGRAVGETMIVLMATGNTPLLD 670 (733)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
T ss_conf 00222203453422443247854466730136871454014575046841889999751111062589997238985212
Q ss_pred HHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998-------31377589999999999999999999999996787430
Q gi|254780171|r 343 AVGFADLVSVGGTII-------NQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALK 395 (398)
Q Consensus 343 ~Ig~~dl~~~~~~~~-------~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~ 395 (398)
T Consensus 671 ~nIFeGmRtlaAniAvEmPEseVgs~-HyRvLFL~ALvLltFTF~vNtLAE~vRqRLRek 729 (733)
T COG4590 671 WNIFEGMRTLAANIAVEMPESEVGSA-HYRVLFLAALVLLTFTFAVNTLAEWVRQRLREK 729 (733)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHCCCC-EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22877788876552121765440663-342689999999999999989999999999988