HHsearch alignment for GI: 254780171 and conserved domain: PRK09471

>PRK09471 oppB oligopeptide transporter permease; Reviewed.
Probab=99.05  E-value=1.1e-07  Score=65.62  Aligned_cols=234  Identities=19%  Similarity=0.225  Sum_probs=153.8

Q ss_pred             CHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHH
Q ss_conf             1213889984437542235686526999999999999999999999999999999996-264246787799999999501
Q gi|254780171|r   61 IGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-LSANKLVAWICRVYVEVFRNI  139 (398)
Q Consensus        61 f~FL~~~agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-lS~N~ll~~la~~YVE~~RN~  139 (398)
T Consensus        64 ~~wl~~~l~GD~G~S~~--~~~~~V~~~i~~~lp~Tl~L~~~a~~i~~~lgi~lGi~aa~~~~~~~D~~~~~~~~~~~si  141 (306)
T PRK09471         64 FSYLKQLAHGDFGPSFK--YKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVI  141 (306)
T ss_pred             HHHHHHHHCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99999986898877672--6898889999988899999999999999999999999999834751619999999999998


Q ss_pred             HHHHHH--HHHHHHH-HHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             469999--9999998-7301210344410372035201000354535567004688778899999999999999864311
Q gi|254780171|r  140 PPLVVI--FFLYKSV-LSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTG  216 (398)
Q Consensus       140 PLLlql--~fwy~~v-~~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg  216 (398)
T Consensus       142 P~F~la~lli~iF~~~l~~~P~----------------------~g~~~~~-----------------------------  170 (306)
T PRK09471        142 PSFVVAPLLVMIFAIILHWLPG----------------------GGWNGGA-----------------------------  170 (306)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCC----------------------CCCCCCH-----------------------------
T ss_conf             9999999998899972176377----------------------8887520-----------------------------


Q ss_pred             CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHH
Q ss_conf             2233204554210103558999765444332210013111268214878999999999997787999999999834-636
Q gi|254780171|r  217 KALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAV-PRG  295 (398)
Q Consensus       217 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sV-pkG  295 (398)
T Consensus       171 ------------------~--------~~l---------------iLP-----~~~l~l~~~~~~~r~~R~~~~~~l~~d  204 (306)
T PRK09471        171 ------------------L--------KFM---------------ILP-----MVALSLAYIASIARITRGSMIEVLHSN  204 (306)
T ss_pred             ------------------H--------HHH---------------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ------------------7--------887---------------536-----999999999999999999999998779


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHCCCCHHHH-HHHHHH
Q ss_conf             78999896899899888987689999974104789999997549999-9999999999-99998313775899-999999
Q gi|254780171|r  296 QMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAV-AVGFADLVSV-GGTIINQTGQAIEI-ILIWMF  372 (398)
Q Consensus       296 Q~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~-~Ig~~dl~~~-~~~~~~~t~~~~e~-~~i~~~  372 (398)
T Consensus       205 yV~~ArakGl~~~~i~~rh~lrnal~P~it~~~~~~~~ll~GsvivE~iF~~PGiG~l~~~Ai~~~D~p~v~g~~l~~a~  284 (306)
T PRK09471        205 FIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGA  284 (306)
T ss_pred             HHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99999986998400730012984299999999999999845871210986476759999999980498999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999967874
Q gi|254780171|r  373 IYLSLSIMIALFMNRLNAKIA  393 (398)
Q Consensus       373 ~Yl~isl~iS~~~n~~~rr~~  393 (398)
T Consensus       285 ~~i~~nll~Dil~~~lDPRiR  305 (306)
T PRK09471        285 LTILFNAIVDVLYAVIDPKIR  305 (306)
T ss_pred             HHHHHHHHHHHHHHHCCCCCC
T ss_conf             999999999999997297558