HHsearch alignment for GI: 254780171 and conserved domain: PRK09471
>PRK09471 oppB oligopeptide transporter permease; Reviewed.
Probab=99.05 E-value=1.1e-07 Score=65.62 Aligned_cols=234 Identities=19% Similarity=0.225 Sum_probs=153.8
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1213889984437542235686526999999999999999999999999999999996-264246787799999999501
Q gi|254780171|r 61 IGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-LSANKLVAWICRVYVEVFRNI 139 (398)
Q Consensus 61 f~FL~~~agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-lS~N~ll~~la~~YVE~~RN~ 139 (398)
T Consensus 64 ~~wl~~~l~GD~G~S~~--~~~~~V~~~i~~~lp~Tl~L~~~a~~i~~~lgi~lGi~aa~~~~~~~D~~~~~~~~~~~si 141 (306)
T PRK09471 64 FSYLKQLAHGDFGPSFK--YKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVI 141 (306)
T ss_pred HHHHHHHHCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999986898877672--6898889999988899999999999999999999999999834751619999999999998
Q ss_pred HHHHHH--HHHHHHH-HHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 469999--9999998-7301210344410372035201000354535567004688778899999999999999864311
Q gi|254780171|r 140 PPLVVI--FFLYKSV-LSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTG 216 (398)
Q Consensus 140 PLLlql--~fwy~~v-~~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg 216 (398)
T Consensus 142 P~F~la~lli~iF~~~l~~~P~----------------------~g~~~~~----------------------------- 170 (306)
T PRK09471 142 PSFVVAPLLVMIFAIILHWLPG----------------------GGWNGGA----------------------------- 170 (306)
T ss_pred HHHHHHHHHHHHHHHHCCCCCC----------------------CCCCCCH-----------------------------
T ss_conf 9999999998899972176377----------------------8887520-----------------------------
Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHH
Q ss_conf 2233204554210103558999765444332210013111268214878999999999997787999999999834-636
Q gi|254780171|r 217 KALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAV-PRG 295 (398)
Q Consensus 217 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sV-pkG 295 (398)
T Consensus 171 ------------------~--------~~l---------------iLP-----~~~l~l~~~~~~~r~~R~~~~~~l~~d 204 (306)
T PRK09471 171 ------------------L--------KFM---------------ILP-----MVALSLAYIASIARITRGSMIEVLHSN 204 (306)
T ss_pred ------------------H--------HHH---------------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------7--------887---------------536-----999999999999999999999998779
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHCCCCHHHH-HHHHHH
Q ss_conf 78999896899899888987689999974104789999997549999-9999999999-99998313775899-999999
Q gi|254780171|r 296 QMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAV-AVGFADLVSV-GGTIINQTGQAIEI-ILIWMF 372 (398)
Q Consensus 296 Q~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~-~Ig~~dl~~~-~~~~~~~t~~~~e~-~~i~~~ 372 (398)
T Consensus 205 yV~~ArakGl~~~~i~~rh~lrnal~P~it~~~~~~~~ll~GsvivE~iF~~PGiG~l~~~Ai~~~D~p~v~g~~l~~a~ 284 (306)
T PRK09471 205 FIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGA 284 (306)
T ss_pred HHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999986998400730012984299999999999999845871210986476759999999980498999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999967874
Q gi|254780171|r 373 IYLSLSIMIALFMNRLNAKIA 393 (398)
Q Consensus 373 ~Yl~isl~iS~~~n~~~rr~~ 393 (398)
T Consensus 285 ~~i~~nll~Dil~~~lDPRiR 305 (306)
T PRK09471 285 LTILFNAIVDVLYAVIDPKIR 305 (306)
T ss_pred HHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999997297558