HHsearch alignment for GI: 254780171 and conserved domain: PRK09881
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional.
Probab=99.25 E-value=1e-07 Score=65.69 Aligned_cols=196 Identities=16% Similarity=0.224 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 526999999999999999999999999999999996-2642467877999999995014699999999998730121034
Q gi|254780171|r 83 SSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-LSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDH 161 (398)
Q Consensus 83 ~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-lS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~ 161 (398)
T Consensus 83 RDv~srll~G~r~sL~i~l~~~~i~~~iG~~lG~~aGy~gG~-~D~il~ri~Dv~~aiP~lll~i~l~~~~--------- 152 (296)
T PRK09881 83 RDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGR-ADAIIMRIMDIMLSIPSLVLTMALAAAL--------- 152 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCCCCCCHHHHHHHHHHH---------
T ss_conf 269999888799999999999999999999999988881760-7665567776301586057778887651---------
Q ss_pred HHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf 44103720352010003545355670046887788999999999999998643112233204554210103558999765
Q gi|254780171|r 162 SIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALK 241 (398)
Q Consensus 162 ~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~ 241 (398)
T Consensus 153 -------------------------------------------------------------------------------- 152 (296)
T PRK09881 153 -------------------------------------------------------------------------------- 152 (296)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 44433221001311126821487899999999999778799999999983463-67899989689989988898768999
Q gi|254780171|r 242 YQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPR-GQMEAAIALGLTHRKATRLVLLPQAM 320 (398)
Q Consensus 242 ~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpk-GQ~EAA~aLGls~~q~~r~VIlPQAl 320 (398)
T Consensus 153 ---------------------g~~~~~~il~i~l~~w~~~aR~vR~~~l~i~~~~yV~AAr~~G~s~~~Ii~rhiLPni~ 211 (296)
T PRK09881 153 ---------------------GPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSL 211 (296)
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHEEEECCHHHHH
T ss_conf ---------------------67516888999998799999999999999963499999998398867854142766618
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------H---HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997410478999999754999999999------9---9999999983137758999999999999999999999999678
Q gi|254780171|r 321 RSIIPPLTSQYLNLLKNSSLAVAVGFA------D---LVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAK 391 (398)
Q Consensus 321 R~~iP~l~nq~i~l~K~SSLa~~Ig~~------d---l~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr 391 (398)
T Consensus 212 ~~liv~~~~~~~~aIl~ea~LsFLGlG~~pp~~sWG~mi~~~~~~~~~--~~-w~~~~Pg~~i~l~vl~~nllgdgLrd~ 288 (296)
T PRK09881 212 PPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLD--QW-WYCAFPGAAILLTAVGFNLFGDGIRDL 288 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999990378999998599999999999987--72-999999999999999999999999998
Q ss_pred H
Q ss_conf 7
Q gi|254780171|r 392 I 392 (398)
Q Consensus 392 ~ 392 (398)
T Consensus 289 l 289 (296)
T PRK09881 289 L 289 (296)
T ss_pred C
T ss_conf 1