HHsearch alignment for GI: 254780171 and conserved domain: PRK10417
>PRK10417 nikC nickel transporter permease NikC; Provisional.
Probab=99.09 E-value=6.1e-07 Score=60.99 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 65269999999999999999999999999999999962642467877999999995014699999999998730121034
Q gi|254780171|r 82 DSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDH 161 (398)
Q Consensus 82 ~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~ 161 (398)
T Consensus 55 GrDv~srll~G~r~sl~i~l~~~~~~~~iG~~lG~~ag~~gg~~d~~~~~~~d~~~~iP~lll~i~l~~~~--------- 125 (272)
T PRK10417 55 GRDIFSRLMAGTRVSLGSVMACLLLVLALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILSFFMVGVL--------- 125 (272)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC---------
T ss_conf 51999999999999999999999999999999999999718761247777788986286287788888644---------
Q ss_pred HHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf 44103720352010003545355670046887788999999999999998643112233204554210103558999765
Q gi|254780171|r 162 SIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALK 241 (398)
Q Consensus 162 ~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~ 241 (398)
T Consensus 126 -------------------------------------------------------------------------------- 125 (272)
T PRK10417 126 -------------------------------------------------------------------------------- 125 (272)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 44433221001311126821487899999999999778799999999983463-67899989689989988898768999
Q gi|254780171|r 242 YQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPR-GQMEAAIALGLTHRKATRLVLLPQAM 320 (398)
Q Consensus 242 ~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpk-GQ~EAA~aLGls~~q~~r~VIlPQAl 320 (398)
T Consensus 126 ---------------------g~~~~~~il~l~l~~w~~~ar~iR~~~l~~~~~~yV~AAr~~G~s~~~I~~rhilPni~ 184 (272)
T PRK10417 126 ---------------------GTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLLGAVI 184 (272)
T ss_pred ---------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHCHHHHH
T ss_conf ---------------------89725899999998899999999999999998999999998395877832201767637
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99741047899999975499999999
Q gi|254780171|r 321 RSIIPPLTSQYLNLLKNSSLAVAVGF 346 (398)
Q Consensus 321 R~~iP~l~nq~i~l~K~SSLa~~Ig~ 346 (398)
T Consensus 185 ~~i~v~~~~~~~~~Il~~a~LsFLGl 210 (272)
T PRK10417 185 PSLLVLATLDIGHMMLHVAGLSFLGL 210 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999999999999999047