HHsearch alignment for GI: 254780171 and conserved domain: TIGR03226
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Probab=99.58 E-value=7e-12 Score=91.12 Aligned_cols=217 Identities=18% Similarity=0.201 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
Q ss_conf 99999999999999999999999999999626424678779999999950146999999999987301210344410372
Q gi|254780171|r 89 ILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFG 168 (398)
Q Consensus 89 ~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~ 168 (398)
T Consensus 90 ~~~al~nTl~~a~~~t~~~lvlG~~lA~~L~r~~f~g~~~l~~ll~lp~~lP~~v~a~a~~~l~-~-------------- 154 (312)
T TIGR03226 90 FRDALGNTLQIAFAAAAGALLLGSALAAILFFIPFPGAELIGRFLDLFIAFPSFLIAFAFIFIY-G-------------- 154 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--------------
T ss_conf 9999999999999999999999999999999623762899999999999988999999999998-3--------------
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 03520100035453556700468877889999999999999986431122332045542101035589997654443322
Q gi|254780171|r 169 MFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDK 248 (398)
Q Consensus 169 ~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 248 (398)
T Consensus 155 ----~~G~ln------------------------------~~L~-------------------------~l----~gl~~ 171 (312)
T TIGR03226 155 ----SAGLLN------------------------------GALM-------------------------RA----FAFDA 171 (312)
T ss_pred ----CCCHHH------------------------------HHHH-------------------------HH----CCCCC
T ss_conf ----577077------------------------------9999-------------------------96----28667
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10013111268214878999999999997787999999999834636789998968998998889876899999741047
Q gi|254780171|r 249 PVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLT 328 (398)
Q Consensus 249 p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~ 328 (398)
T Consensus 172 ~p~---------~~l~s~~gVvla~i~~~~Pf~~l~~~a~l~~id~~l~EAA~~lGAs~~~~Fr~VtLPll~P~i~ag~l 242 (312)
T TIGR03226 172 PPL---------DFLFGAGGVILAEITFFTPFVMRPLLAAFAQIDKRLLEAASILGAHGLMLAGQVIFPAALPAIAAGGI 242 (312)
T ss_pred CCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 745---------77740999999999998999999999999968978999998849998886787427846899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999975499999999999999999983137--7589999999999999999999999996787
Q gi|254780171|r 329 SQYLNLLKNSSLAVAVGFADLVSVGGTIINQTG--QAIEIILIWMFIYLSLSIMIALFMNRLNAKI 392 (398)
Q Consensus 329 nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~--~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~ 392 (398)
T Consensus 243 L~Fi~~~~~F~~~~~lgg~~~~tl~~~Iy~~~~~~~d~~~AaAlavillv~~l~l~~l~r~~~rR~ 308 (312)
T TIGR03226 243 LCFLLTLNEFGILLFIGAAGLITLPMAIYSKAILDIDLPAAAAGALIMIALSLALFALYRLAARRA 308 (312)
T ss_pred HHHHHHHHHHCCEEEEECCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999977541134408997017999999998757989999999999999999999999998763