HHsearch alignment for GI: 254780171 and conserved domain: TIGR03416
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.39 E-value=4e-10 Score=80.41 Aligned_cols=166 Identities=23% Similarity=0.252 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEE
Q ss_conf 99999999999999999999999999626424678779999999950146999999999987301210344410372035
Q gi|254780171|r 92 GFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFL 171 (398)
Q Consensus 92 Gl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~~fl 171 (398)
T Consensus 87 ~am~Tlalv~~av~la~~iGiPlGI~-~~~s~~~~~~l~pild~mQTiP~fvyLip------------------------ 141 (267)
T TIGR03416 87 ETVETLALVLSATVVCMVIGVPLGIA-AAHRPWLYAIMRPVLDLMQTLPTFVYLIP------------------------ 141 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHCCCHHHHHHH------------------------
T ss_conf 99999999999999999999999999-98169999999999987431546799999------------------------
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 20100035453556700468877889999999999999986431122332045542101035589997654443322100
Q gi|254780171|r 172 NNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVL 251 (398)
Q Consensus 172 snRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l 251 (398)
T Consensus 142 ------------------------------------------------------------------------------~i 143 (267)
T TIGR03416 142 ------------------------------------------------------------------------------AL 143 (267)
T ss_pred ------------------------------------------------------------------------------HH
T ss_conf ------------------------------------------------------------------------------99
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13111268214878999999999997787999999999834636789998968998998889876899999741047899
Q gi|254780171|r 252 GQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQY 331 (398)
Q Consensus 252 ~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~ 331 (398)
T Consensus 144 ~lf----GiG~----~~aiia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i 215 (267)
T TIGR03416 144 VLF----GLGM----VPGLISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTI 215 (267)
T ss_pred HHH----CCCC----HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 994----8870----56999999999889999999999856768999999839989889799418415899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCHHHHHH
Q ss_conf 9999754999999999999999--999831377589999
Q gi|254780171|r 332 LNLLKNSSLAVAVGFADLVSVG--GTIINQTGQAIEIIL 368 (398)
Q Consensus 332 i~l~K~SSLa~~Ig~~dl~~~~--~~~~~~t~~~~e~~~ 368 (398)
T Consensus 216 ~~al~mvviaa~IGa~GLG~~v~~~l~~~~~g~~l~~gi 254 (267)
T TIGR03416 216 MLSLSMVVIAALVGADGLGVPVVRALNTVNIALGFEAGL 254 (267)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf 999999999999678853699999986335688999999