HHsearch alignment for GI: 254780171 and conserved domain: pfam00528
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.57 E-value=2.1e-12 Score=94.26 Aligned_cols=125 Identities=22% Similarity=0.250 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 999999999778799999999983463678999896899899888987689999974104789999997549999999--
Q gi|254780171|r 268 SLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG-- 345 (398)
Q Consensus 268 a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig-- 345 (398)
T Consensus 54 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~ 133 (183)
T pfam00528 54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW 133 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999997068999999998699843412992189899999999999999999999999999368
Q ss_pred --HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --999999999998313775899999999999999999999999967874
Q gi|254780171|r 346 --FADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIA 393 (398)
Q Consensus 346 --~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~ 393 (398)
T Consensus 134 ~GlG~~~~~a~~~~-d~~~~~~~~~~~~~~~~~~~~~~d~l~~~ldpr~r 182 (183)
T pfam00528 134 PGLGLLLIEAILGY-DYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182 (183)
T ss_pred CCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 96759999999977-09999999999999999999999999987391017