HHsearch results for GI: 254780171 and protein with PDBid: 3dhw_A
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1
Probab=99.94 E-value=2.3e-26 Score=178.05 Aligned_cols=206 Identities=23% Similarity=0.332 Sum_probs=162.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6526999999999999999999999999999999996-------264246787799999999501469999999999873
Q gi|254780171|r 82 DSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-------LSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLS 154 (398)
Q Consensus 82 ~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-------lS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~ 154 (398)
+|+..+-++-|+.||+++++.+.++++++|+.+|+.. ...+..+.+....+++++|++|.++.+++..... .
T Consensus 2 s~~~~~l~l~~~~~Tl~~a~~~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~-~ 80 (217)
T 3dhw_A 2 SEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFT-R 80 (217)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 878999999999999999999999999999999999999864443200899999999999999999999999999999-9
Q ss_pred HCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHH
Q ss_conf 01210344410372035201000354535567004688778899999999999999864311223320455421010355
Q gi|254780171|r 155 VLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPT 234 (398)
Q Consensus 155 ~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~ 234 (398)
..
T Consensus 81 ~~------------------------------------------------------------------------------ 82 (217)
T 3dhw_A 81 VI------------------------------------------------------------------------------ 82 (217)
T ss_dssp HT------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
T ss_conf 99------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 89997654443322100131112682148789999999999977879999999998346367899989689989988898
Q gi|254780171|r 235 LVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 235 l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
. |.. ..+.+.++++++++..|+.+.+|+|++++|++|.|||+++|.|++|++|+|
T Consensus 83 -----------------~------~~~--~~~~~~ii~~~~~~~~~~~~~~~~~l~~i~~~~~eAA~~lGas~~q~f~~v 137 (217)
T 3dhw_A 83 -----------------V------GTS--IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKV 137 (217)
T ss_dssp -----------------T------CCS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHT
T ss_pred -----------------H------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf -----------------8------612--369999999999867999999999998589899999871898989996974
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 768999997410478999999754999999999999999999831377589999999999999999999999996787
Q gi|254780171|r 315 LLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKI 392 (398)
Q Consensus 315 IlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~ 392 (398)
++||+.+.+++++.+.++..+|+++++..+|.+|+...+.....+.++.-. .......+.++...+....++++||+
T Consensus 138 ilP~~~p~ii~~~~~~~~~~i~~~~i~~~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (217)
T 3dhw_A 138 LLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATV-MNTVLVLLVILVYLIQFAGDRIVRAV 214 (217)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCCHHHHHHHHHHHSSCCTTH-HHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 199789999999999999999999999999887999999999998600899-99999999999999999999999975