Query gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 398
No_of_seqs 235 out of 3177
Neff 6.6
Searched_HMMs 23785
Date Mon May 23 02:19:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780171.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dhw_A D-methionine transport 99.9 2.3E-26 9.7E-31 178.0 14.2 206 82-392 2-214 (217)
2 3d31_C Sulfate/molybdate ABC t 99.9 4.5E-20 1.9E-24 139.7 18.5 213 88-398 79-295 (295)
3 2onk_C Molybdate/tungstate ABC 99.8 8.4E-19 3.5E-23 132.0 21.2 212 88-398 69-283 (284)
4 2r6g_F Maltose transport syste 99.7 2.4E-15 1E-19 110.9 17.9 224 81-391 269-511 (514)
5 2r6g_G Maltose transport syste 99.3 2.1E-10 8.6E-15 80.8 17.0 76 270-345 162-237 (296)
6 1eto_A FIS, factor for inversi 79.9 2.1 8.6E-05 19.9 4.3 37 278-314 56-92 (98)
7 1ntc_A Protein (nitrogen regul 78.3 1.8 7.7E-05 20.2 3.7 38 277-314 48-85 (91)
8 1umq_A Photosynthetic apparatu 78.1 2.4 0.0001 19.5 4.2 36 279-314 40-75 (81)
9 3e7l_A Transcriptional regulat 74.6 3.4 0.00014 18.5 5.0 37 278-314 17-53 (63)
10 1g2h_A Transcriptional regulat 72.8 3.7 0.00016 18.3 4.1 36 278-314 19-54 (61)
11 1ojl_A Transcriptional regulat 54.3 8.5 0.00036 16.1 4.0 35 280-314 268-302 (304)
12 2cw1_A SN4M; lambda CRO fold, 41.9 8 0.00034 16.3 1.3 29 292-326 12-40 (65)
13 1i3j_A I-TEVI, intron-associat 35.2 17 0.00072 14.3 2.7 22 294-315 84-105 (116)
14 2w7n_A TRFB transcriptional re 34.3 18 0.00074 14.2 2.8 30 282-312 24-53 (101)
15 2kog_A Vesicle-associated memb 31.8 19 0.00081 14.0 2.7 24 11-34 85-108 (119)
16 2ovg_A Phage lambda CRO; trans 31.0 20 0.00084 13.9 2.1 18 293-310 13-30 (66)
17 1yfn_E Sigma-E factor negative 27.9 23 0.00095 13.5 2.1 26 7-34 3-28 (32)
18 2pij_A Prophage PFL 6 CRO; tra 21.0 31 0.0013 12.7 2.1 18 293-310 12-30 (67)
No 1
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1
Probab=99.94 E-value=2.3e-26 Score=178.05 Aligned_cols=206 Identities=23% Similarity=0.332 Sum_probs=162.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6526999999999999999999999999999999996-------264246787799999999501469999999999873
Q gi|254780171|r 82 DSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-------LSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLS 154 (398)
Q Consensus 82 ~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-------lS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~ 154 (398)
+|+..+-++-|+.||+++++.+.++++++|+.+|+.. ...+..+.+....+++++|++|.++.+++..... .
T Consensus 2 s~~~~~l~l~~~~~Tl~~a~~~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~-~ 80 (217)
T 3dhw_A 2 SEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFT-R 80 (217)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 878999999999999999999999999999999999999864443200899999999999999999999999999999-9
Q ss_pred HCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHH
Q ss_conf 01210344410372035201000354535567004688778899999999999999864311223320455421010355
Q gi|254780171|r 155 VLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPT 234 (398)
Q Consensus 155 ~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~ 234 (398)
..
T Consensus 81 ~~------------------------------------------------------------------------------ 82 (217)
T 3dhw_A 81 VI------------------------------------------------------------------------------ 82 (217)
T ss_dssp HT------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
T ss_conf 99------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 89997654443322100131112682148789999999999977879999999998346367899989689989988898
Q gi|254780171|r 235 LVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 235 l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
. |.. ..+.+.++++++++..|+.+.+|+|++++|++|.|||+++|.|++|++|+|
T Consensus 83 -----------------~------~~~--~~~~~~ii~~~~~~~~~~~~~~~~~l~~i~~~~~eAA~~lGas~~q~f~~v 137 (217)
T 3dhw_A 83 -----------------V------GTS--IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKV 137 (217)
T ss_dssp -----------------T------CCS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHT
T ss_pred -----------------H------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf -----------------8------612--369999999999867999999999998589899999871898989996974
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 768999997410478999999754999999999999999999831377589999999999999999999999996787
Q gi|254780171|r 315 LLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKI 392 (398)
Q Consensus 315 IlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~ 392 (398)
++||+.+.+++++.+.++..+|+++++..+|.+|+...+.....+.++.-. .......+.++...+....++++||+
T Consensus 138 ilP~~~p~ii~~~~~~~~~~i~~~~i~~~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (217)
T 3dhw_A 138 LLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATV-MNTVLVLLVILVYLIQFAGDRIVRAV 214 (217)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCCHHHHHHHHHHHSSCCTTH-HHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 199789999999999999999999999999887999999999998600899-99999999999999999999999975
No 2
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=99.86 E-value=4.5e-20 Score=139.71 Aligned_cols=213 Identities=16% Similarity=0.173 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
Q ss_conf 99999999999999999999999999999962-64246787799999999501469999999999873012103444103
Q gi|254780171|r 88 AILVGFVNTFWLAFSGMIPATIIGTLVGAGRL-SANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLP 166 (398)
Q Consensus 88 a~~vGl~NTl~va~~givlatiLG~~iGi~Rl-S~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~ 166 (398)
.++.++.||+.+++++.++++++|+.+|..-- ++.+ .++.......+---+|..+.-+.|+...-..
T Consensus 79 ~~~~~i~~Tl~~a~~s~~i~~ilg~~~a~~l~~~~~~-~~~~~~~l~~~p~~~p~~v~~~~~~~~~~~~----------- 146 (295)
T 3d31_C 79 SVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFP-GKRLVESIIDVPVVVPHTVAGIALLTVFGSR----------- 146 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCT-THHHHHHHHHGGGTSCHHHHHHHHHHHHSTT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_conf 9999999999999999999999999999999964543-5899999999999999888999999986124-----------
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 72035201000354535567004688778899999999999999864311223320455421010355899976544433
Q gi|254780171|r 167 FGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHF 246 (398)
Q Consensus 167 ~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~ 246 (398)
|...+
T Consensus 147 --------g~~~~------------------------------------------------------------------- 151 (295)
T 3d31_C 147 --------GLIGE------------------------------------------------------------------- 151 (295)
T ss_dssp --------STTTG-------------------------------------------------------------------
T ss_pred --------CCCCC-------------------------------------------------------------------
T ss_conf --------65332-------------------------------------------------------------------
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22100131112682148789999999999977879999999998346367899989689989988898768999997410
Q gi|254780171|r 247 DKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPP 326 (398)
Q Consensus 247 ~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~ 326 (398)
+ ...+......+.+++++.+++...|..++++++++++|+.+.|||+++|.+++|++++|++|++.+.+++.
T Consensus 152 --~------~~~~~~~~~~~~~iii~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~~Gas~~~~~~~IiLP~~~p~i~~~ 223 (295)
T 3d31_C 152 --P------LESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIG 223 (295)
T ss_dssp --G------GTTTCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHH
T ss_pred --C------HHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH
T ss_conf --1------01026712578999999999807443201578887315269999998499936632353399899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 47899999975499999999999999---9999831377589999999999999999999999996787430479
Q gi|254780171|r 327 LTSQYLNLLKNSSLAVAVGFADLVSV---GGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK 398 (398)
Q Consensus 327 l~nq~i~l~K~SSLa~~Ig~~dl~~~---~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~er~ 398 (398)
+.-.++..++|...+..+|..+.+.. .+...+ ++ .+.-..++++++++++.+..+.|+++||-...+|.
T Consensus 224 ~~l~f~~~~~~f~~~~~l~~~~~~~~~~i~~~~~~--~~-~~~a~a~a~il~ii~l~i~~~~~~L~~~~~~~~r~ 295 (295)
T 3d31_C 224 SVMTWARAISEFGAVVILAYYPMVGPTLIYDRFIS--YG-LSASRPIAVLLILVTLSIFLVIRTLSAGWSIYDRD 295 (295)
T ss_dssp HHHHHHHHHTCCHHHHHHHCTTCCHHHHHHHHHHH--ST-TTTTHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCC
T ss_conf 99999999999999998848973499999999993--48-99999999999999999999999999745033579
No 3
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=99.84 E-value=8.4e-19 Score=131.95 Aligned_cols=212 Identities=14% Similarity=0.105 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
Q ss_conf 99999999999999999999999999999962642467877999999995014699999999998730121034441037
Q gi|254780171|r 88 AILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPF 167 (398)
Q Consensus 88 a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~ 167 (398)
.+...+.||+.+++++.++++++|+.+|..--..++-.++.-.....+-.-+|-++-.+.|+.......+.
T Consensus 69 ~~~~~~~~Sl~~a~~s~~l~~~ig~~~a~~l~~~~~~~~~~~~~l~~~p~~iP~~v~~~~~~~~~~~~~~~--------- 139 (284)
T 2onk_C 69 AVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLI--------- 139 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTSTT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC---------
T ss_conf 99999999999999999999999999999999826448999999999787445144566665533122556---------
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 20352010003545355670046887788999999999999998643112233204554210103558999765444332
Q gi|254780171|r 168 GMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFD 247 (398)
Q Consensus 168 ~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~ 247 (398)
.
T Consensus 140 ----------~--------------------------------------------------------------------- 140 (284)
T 2onk_C 140 ----------G--------------------------------------------------------------------- 140 (284)
T ss_dssp ----------T---------------------------------------------------------------------
T ss_pred ----------C---------------------------------------------------------------------
T ss_conf ----------7---------------------------------------------------------------------
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21001311126821487899999999999778799999999983463678999896899899888987689999974104
Q gi|254780171|r 248 KPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPL 327 (398)
Q Consensus 248 ~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l 327 (398)
-..+......+.+++++.+..+..|..++.+++++++|+++.|||+++|.+++|++++|++||+.+.+++..
T Consensus 141 --------~~~~~~~~~~~~~iil~~~~~~~p~~~~~~~~~l~~i~~~l~eaA~~lGas~~~~~~~IilP~~~p~i~~~~ 212 (284)
T 2onk_C 141 --------SFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGA 212 (284)
T ss_dssp --------TTCSSCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHH
T ss_pred --------CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEHEEEHHHHHHHHHHHH
T ss_conf --------621000321069999998861465022234355315885689999975989353011024999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 789999997549999999999999---99999831377589999999999999999999999996787430479
Q gi|254780171|r 328 TSQYLNLLKNSSLAVAVGFADLVS---VGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK 398 (398)
Q Consensus 328 ~nq~i~l~K~SSLa~~Ig~~dl~~---~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~er~ 398 (398)
.-.+...++|.+.+..+|...... ..+...+..+ +.....+.+..++++.+..+.+++++|-+.+|+|
T Consensus 213 il~f~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~---~~~~a~a~il~~i~l~~~~~~~~l~~r~~~~~~~ 283 (284)
T 2onk_C 213 IMSWARGISEFGAVVVIAYYPMIAPTLIYERYLSEGL---SAAMPVAAILILLSLAVFVALRIIVGREDVSEGQ 283 (284)
T ss_dssp HHHHHHHHHCCHHHHTTCCSSCCHHHHHHHHHHHHCG---GGTHHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999998828985299999999980589---9999999999999999999999999713774399
No 4
>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F
Probab=99.70 E-value=2.4e-15 Score=110.86 Aligned_cols=224 Identities=13% Similarity=0.110 Sum_probs=156.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 86526999999999999999999999999999999996264246787799999999501469999999999873012103
Q gi|254780171|r 81 SDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPD 160 (398)
Q Consensus 81 ~~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~ 160 (398)
.++.+++++.-.+.||+..++++.+++.++|+.++..-..++.-.+++.+....+-.-+|..+-.+.|....-..+....
T Consensus 269 ~d~~~~~~~~~sl~~t~~~a~~s~~l~~~~gl~la~~~~~~~~r~~~~~~~l~~lP~~iP~iv~~l~~~~lf~~~~G~i~ 348 (514)
T 2r6g_F 269 TDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEIN 348 (514)
T ss_dssp TCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCSSSSHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 29507789999999999998788999999999999998641235111302512699999999999999998712442355
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHH
Q ss_conf 44410372035201000354535567004688778899999999999999864311223320455421010355899976
Q gi|254780171|r 161 HSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIAL 240 (398)
Q Consensus 161 ~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~ 240 (398)
...... .
T Consensus 349 ~~l~~l-------------------------------------------------------------------------~ 355 (514)
T 2r6g_F 349 MMLSAL-------------------------------------------------------------------------F 355 (514)
T ss_dssp HHHHHT-------------------------------------------------------------------------S
T ss_pred HHHHHC-------------------------------------------------------------------------C
T ss_conf 566640-------------------------------------------------------------------------4
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 544433221001311126821487--899999999999778799999999983463678999896899899888987689
Q gi|254780171|r 241 KYQLHFDKPVLGQFNFIGGSTVSP--EFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQ 318 (398)
Q Consensus 241 ~~~~~~~~p~l~~f~~~gG~~l~p--~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQ 318 (398)
+ .+. .+...| .+.+.+++.......|+..++++++++||+.+.|||+.+|.|++|++++|++|+
T Consensus 356 g----~~~----------~~l~~~~~~~~~vil~~~~~~~P~~~~i~~~al~sIp~~l~EAA~idGAs~~q~f~~I~lPl 421 (514)
T 2r6g_F 356 G----VKP----------AWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPL 421 (514)
T ss_dssp S----CCC----------CTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGG
T ss_pred C----CCC----------CHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHEEEHHH
T ss_conf 8----885----------03137687799999999988887877765544316985899999975988622301130364
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH--HHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999974104789999997549999999--------------9999999--9999831-3775899999999999999999
Q gi|254780171|r 319 AMRSIIPPLTSQYLNLLKNSSLAVAVG--------------FADLVSV--GGTIINQ-TGQAIEIILIWMFIYLSLSIMI 381 (398)
Q Consensus 319 AlR~~iP~l~nq~i~l~K~SSLa~~Ig--------------~~dl~~~--~~~~~~~-t~~~~e~~~i~~~~Yl~isl~i 381 (398)
..+.++|.+.-.++..++|-.+...++ ..|.... .+...+. .++.+..-..++++.+++...+
T Consensus 422 l~p~i~~~~il~f~~~~~~F~~~~lLt~Ggp~~~~~~~~~~~t~~l~~~~y~~af~~~~~~~~g~AaAiavil~liv~~l 501 (514)
T 2r6g_F 422 LIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGAL 501 (514)
T ss_dssp THHHHHHHHHHHHHHHHTCHHHHHHHCSSCSBCSSCSSCCBSSCCHHHHHHHHHTSSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 69999999999999999988899999479987555556540688999999999985154567899999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999678
Q gi|254780171|r 382 ALFMNRLNAK 391 (398)
Q Consensus 382 S~~~n~~~rr 391 (398)
+.+..+..||
T Consensus 502 ~~i~~r~~r~ 511 (514)
T 2r6g_F 502 AIVNLKATRM 511 (514)
T ss_dssp HHC-------
T ss_pred HHHHHHHHHH
T ss_conf 9999999811
No 5
>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: f.58.1.1 PDB: 3fh6_G
Probab=99.33 E-value=2.1e-10 Score=80.84 Aligned_cols=76 Identities=20% Similarity=0.138 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999778799999999983463678999896899899888987689999974104789999997549999999
Q gi|254780171|r 270 YIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG 345 (398)
Q Consensus 270 ~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig 345 (398)
++.....+..|..=.++++++++|+.+.|||+.+|.+++|++|+|++|+..+.++-...-.++...++=......+
T Consensus 162 vi~~~~~~~pf~~~~~~~~l~~ip~~l~EAA~~dGAs~~~~f~~I~lPll~p~i~~~~~l~fi~~~~~f~~~~~~~ 237 (296)
T 2r6g_G 162 VIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLL 237 (296)
T ss_dssp HHHHHTTTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999899999999973407778889875993033243899847568999999999999999768888135
No 6
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=79.90 E-value=2.1 Score=19.89 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 7879999999998346367899989689989988898
Q gi|254780171|r 278 AAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 278 aAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
...=-+.++.++.--.--|.+||+.||+++...+|++
T Consensus 56 ~~~E~~~I~~aL~~~~gn~~~aA~~LGisR~tL~~kl 92 (98)
T 1eto_A 56 AEVEQPLLDMVMQYTLGNQTRAALMMGINRGTLRKKL 92 (98)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999919988999999798999999999
No 7
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=78.31 E-value=1.8 Score=20.18 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 77879999999998346367899989689989988898
Q gi|254780171|r 277 TAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 277 taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
...+=.++++..++...--|.+||+.||++|...++++
T Consensus 48 ~~~~Er~lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~Kl 85 (91)
T 1ntc_A 48 QPELERTLLTTALRHTQGHKQEAARLLGWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999999968959999999798999999999
No 8
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=78.12 E-value=2.4 Score=19.48 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 879999999998346367899989689989988898
Q gi|254780171|r 279 AFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 279 AyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
..--|.++..+..-.--+.+||+.||+++...+|++
T Consensus 40 ~~Er~~I~~aL~~~~GN~s~AAr~LGIsR~TLyrkl 75 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRIL 75 (81)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999999972779999999798999999999
No 9
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus}
Probab=74.65 E-value=3.4 Score=18.54 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 7879999999998346367899989689989988898
Q gi|254780171|r 278 AAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 278 aAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
-.|-.|+++..++.-.--+.+||+.||+++...++++
T Consensus 17 ~~~E~~~I~~aL~~~~gn~s~aA~~Lgi~r~tL~~kl 53 (63)
T 3e7l_A 17 KEFEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999919989999999897999999999
No 10
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=72.81 E-value=3.7 Score=18.32 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 7879999999998346367899989689989988898
Q gi|254780171|r 278 AAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 278 aAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
..|=-++++.+++.- .++.+||+.||+++...+|++
T Consensus 19 ~~~Ek~~I~~aL~~~-g~~~~aA~~Lgisr~tL~rKl 54 (61)
T 1g2h_A 19 GFYEAQVLKLFYAEY-PSTRKLAQRLGVSHTAIANKL 54 (61)
T ss_dssp SHHHHHHHHHHHHHS-CSHHHHHHHTTSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999999996-899999999797899999999
No 11
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=54.29 E-value=8.5 Score=16.12 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 79999999998346367899989689989988898
Q gi|254780171|r 280 FIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 280 yiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
+-.+++..++.--..-|.+||+.||++|...+|++
T Consensus 268 ~E~~~I~~aL~~~~gn~~~aA~~LGisR~tLyrkl 302 (304)
T 1ojl_A 268 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 302 (304)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999929989999999888999999986
No 12
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=41.91 E-value=8 Score=16.30 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46367899989689989988898768999997410
Q gi|254780171|r 292 VPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPP 326 (398)
Q Consensus 292 VpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~ 326 (398)
-+|.|--||+|||+|..- +...+++-+|-
T Consensus 12 edknqeyaaralglsqkl------ieevlkrglpv 40 (65)
T 2cw1_A 12 EDKNQEYAARALGLSQKL------IEEVLKRGLPV 40 (65)
T ss_dssp TTSCHHHHHHHSSSCHHH------HHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCHHHH------HHHHHHCCCCE
T ss_conf 600288999984116999------99999759956
No 13
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex, extended structure, Zn-finger, minor groove helix, helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP: d.285.1.1 PDB: 1t2t_A
Probab=35.24 E-value=17 Score=14.29 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=19.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 3678999896899899888987
Q gi|254780171|r 294 RGQMEAAIALGLTHRKATRLVL 315 (398)
Q Consensus 294 kGQ~EAA~aLGls~~q~~r~VI 315 (398)
....|||+.||.++..+.+++-
T Consensus 84 ~S~~EAAr~Lgis~~TI~~RiK 105 (116)
T 1i3j_A 84 DCAADAARHFKISSGLVTYRVK 105 (116)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
T ss_conf 2899999996898377899870
No 14
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=34.28 E-value=18 Score=14.20 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 9999999983463678999896899899888
Q gi|254780171|r 282 AEIVRSGLIAVPRGQMEAAIALGLTHRKATR 312 (398)
Q Consensus 282 aEivR~gI~sVpkGQ~EAA~aLGls~~q~~r 312 (398)
-||-|+ ++==.++|.|.|.++|+|+...-.
T Consensus 24 ~~iAr~-VLV~G~~~~evA~~~Glskq~V~~ 53 (101)
T 2w7n_A 24 IEIARG-VLVDGKPQATFATSLGLTRGAVSQ 53 (101)
T ss_dssp HHHHHH-HHTTCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHH-HHHCCCCHHHHHHHHCCHHHHHHH
T ss_conf 999999-984884099999996803889999
No 15
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=31.82 E-value=19 Score=13.95 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=11.9
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 233110332038899999999999
Q gi|254780171|r 11 RYFSRMKFLYDMRVHNISVQIILA 34 (398)
Q Consensus 11 ~~~~~~~~~~d~~~~~~~~Q~~~~ 34 (398)
+...+..+|++.|..-++.-++++
T Consensus 85 ~kL~r~mwwrn~K~~ii~~~v~~i 108 (119)
T 2kog_A 85 AKLKRKYWWKNLKMMIILGVICAI 108 (119)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 16
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexibility; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=31.00 E-value=20 Score=13.87 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHCCCHHHH
Q ss_conf 636789998968998998
Q gi|254780171|r 293 PRGQMEAAIALGLTHRKA 310 (398)
Q Consensus 293 pkGQ~EAA~aLGls~~q~ 310 (398)
..||-+||+.||.+..-+
T Consensus 13 ~~GQ~k~A~~lGV~q~AI 30 (66)
T 2ovg_A 13 RFGQTKTAKDLGVYPSSI 30 (66)
T ss_dssp HHCHHHHHHHHTSCHHHH
T ss_pred HHCHHHHHHHCCCCHHHH
T ss_conf 978599999909768999
No 17
>1yfn_E Sigma-E factor negative regulatory protein; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli}
Probab=27.87 E-value=23 Score=13.54 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=17.1
Q ss_pred CCCCHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6768233110332038899999999999
Q gi|254780171|r 7 KTVTRYFSRMKFLYDMRVHNISVQIILA 34 (398)
Q Consensus 7 ~~~~~~~~~~~~~~d~~~~~~~~Q~~~~ 34 (398)
...+..+.++|||+. .|.|.-|+--+
T Consensus 3 QP~P~~w~~mPFW~K--~RPwasqitQv 28 (32)
T 1yfn_E 3 QPAPHQWQKMPFWQK--VRPWAAQLTQM 28 (32)
T ss_pred CCCHHHHHHCCHHHH--HCHHHHHHHHH
T ss_conf 887267775828876--25099988777
No 18
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution; 1.70A {Pseudomonas fluorescens pf-5}
Probab=20.95 E-value=31 Score=12.72 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=14.7
Q ss_pred CHH-HHHHHHHHCCCHHHH
Q ss_conf 636-789998968998998
Q gi|254780171|r 293 PRG-QMEAAIALGLTHRKA 310 (398)
Q Consensus 293 pkG-Q~EAA~aLGls~~q~ 310 (398)
..| |-+||+.||.+..-+
T Consensus 12 ~~G~Q~k~A~~lGV~Q~AI 30 (67)
T 2pij_A 12 EHGTQSALAAALGVNQSAI 30 (67)
T ss_dssp HTCCHHHHHHHHTSCHHHH
T ss_pred HHCCHHHHHHHHCCCHHHH
T ss_conf 8385889999919758999
Done!