HHSEARCH alignment of GI: 254780171 and SCOP domain: d3dhwa1

Alignment
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=99.92  E-value=3.8e-24  Score=163.11  Aligned_cols=190  Identities=25%  Similarity=0.357  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             9999999999999999999999999999999-------626424678779999999950146999999999987301210
Q gi|254780171|r   87 TAILVGFVNTFWLAFSGMIPATIIGTLVGAG-------RLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIP  159 (398)
Q Consensus        87 ~a~~vGl~NTl~va~~givlatiLG~~iGi~-------RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~  159 (398)
                      +.++.|+.||+.+++.+.++|+++|+.+|+.       +...++.+.+....+++++|.+|..+++++.+.... ..   
T Consensus         2 ~lll~~~~~tl~is~~~~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~-~~---   77 (203)
T d3dhwa1           2 WLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTR-VI---   77 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-HT---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---
T ss_conf             88999999999999999999999999999999998744432008999999999999999999999999998635-54---


Q ss_pred             HHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHH
Q ss_conf             34441037203520100035453556700468877889999999999999986431122332045542101035589997
Q gi|254780171|r  160 DHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIA  239 (398)
Q Consensus       160 ~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~  239 (398)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (203)
T d3dhwa1          78 --------------------------------------------------------------------------------   77 (203)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             65444332210013111268214878999999999997787999999999834636789998968998998889876899
Q gi|254780171|r  240 LKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQA  319 (398)
Q Consensus       240 ~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQA  319 (398)
                                        .|..  ..+.+.++++++++.+|+++++|+|++++|++|.|||+++|.|++|++|+|++||+
T Consensus        78 ------------------~~~~--~~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~  137 (203)
T d3dhwa1          78 ------------------VGTS--IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEA  137 (203)
T ss_dssp             ------------------TCCS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHH
T ss_pred             ------------------HCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             ------------------0454--11999999999986489999999888843620689998869944424188409976


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99974104789999997549999999999999999998313775899999999999999999
Q gi|254780171|r  320 MRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMI  381 (398)
Q Consensus       320 lR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~i  381 (398)
                      .+.+++...+++...+|+++++..+|.+|+.....+..++.++..+....+.. .+++...+
T Consensus       138 ~p~i~~~~~~~~~~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~li  198 (203)
T d3dhwa1         138 LPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVL-LVILVYLI  198 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSTTCCHHHHHHHHHHHSSCCTTHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHH
T ss_conf             99999999999999999999999997759999999999874028999999999-99999999


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: D-methionine transport system permease protein MetI
species: Escherichia coli [TaxId: 562]