Query gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 398 No_of_seqs 235 out of 3177 Neff 6.6 Searched_HMMs 13730 Date Mon May 23 01:59:56 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780171.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d3dhwa1 f.58.1.1 (A:6-208) D-m 99.9 3.8E-24 2.7E-28 163.1 15.7 190 87-381 2-198 (203) 2 d2onkc1 f.58.1.1 (C:1-252) Mol 99.7 4.6E-16 3.3E-20 113.8 18.3 165 89-349 47-211 (252) 3 d3d31c1 f.58.1.1 (C:13-260) Su 99.7 1.1E-14 7.8E-19 105.5 19.5 169 88-350 44-212 (248) 4 d2r6gf2 f.58.1.1 (F:261-504) M 99.5 7.8E-13 5.6E-17 94.2 17.9 180 81-345 9-188 (244) 5 d2r6gg1 f.58.1.1 (G:7-296) Mal 99.4 3.5E-11 2.6E-15 84.0 16.9 78 269-346 155-232 (290) 6 d1etxa_ a.4.1.12 (A:) FIS prot 78.8 1.3 9.7E-05 19.6 4.3 37 278-314 47-83 (89) 7 d1umqa_ a.4.1.12 (A:) Photosyn 75.6 1.8 0.00013 18.8 4.2 35 280-314 20-54 (60) 8 d1ntca_ a.4.1.12 (A:) DNA-bind 73.3 1.7 0.00013 18.9 3.7 37 278-314 49-85 (91) 9 d1g2ha_ a.4.1.12 (A:) Transcri 58.9 4.1 0.0003 16.6 4.3 36 278-314 19-54 (61) 10 d1i3ja_ d.285.1.1 (A:) DNA-bin 50.7 5.3 0.00038 15.9 2.7 22 294-315 65-86 (96) 11 d2jn6a1 a.4.1.19 (A:1-89) Unch 20.1 19 0.0013 12.6 3.3 39 276-314 6-44 (89) No 1 >d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Probab=99.92 E-value=3.8e-24 Score=163.11 Aligned_cols=190 Identities=25% Similarity=0.357 Sum_probs=155.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 9999999999999999999999999999999-------626424678779999999950146999999999987301210 Q gi|254780171|r 87 TAILVGFVNTFWLAFSGMIPATIIGTLVGAG-------RLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIP 159 (398) Q Consensus 87 ~a~~vGl~NTl~va~~givlatiLG~~iGi~-------RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~ 159 (398) +.++.|+.||+.+++.+.++|+++|+.+|+. +...++.+.+....+++++|.+|..+++++.+.... .. T Consensus 2 ~lll~~~~~tl~is~~~~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~-~~--- 77 (203) T d3dhwa1 2 WLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTR-VI--- 77 (203) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-HT--- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--- T ss_conf 88999999999999999999999999999999998744432008999999999999999999999999998635-54--- Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHH Q ss_conf 34441037203520100035453556700468877889999999999999986431122332045542101035589997 Q gi|254780171|r 160 DHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIA 239 (398) Q Consensus 160 ~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~ 239 (398) T Consensus 78 -------------------------------------------------------------------------------- 77 (203) T d3dhwa1 78 -------------------------------------------------------------------------------- 77 (203) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 65444332210013111268214878999999999997787999999999834636789998968998998889876899 Q gi|254780171|r 240 LKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQA 319 (398) Q Consensus 240 ~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQA 319 (398) .|.. ..+.+.++++++++.+|+++++|+|++++|++|.|||+++|.|++|++|+|++||+ T Consensus 78 ------------------~~~~--~~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~ 137 (203) T d3dhwa1 78 ------------------VGTS--IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEA 137 (203) T ss_dssp ------------------TCCS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHH T ss_pred ------------------HCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf ------------------0454--11999999999986489999999888843620689998869944424188409976 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99974104789999997549999999999999999998313775899999999999999999 Q gi|254780171|r 320 MRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMI 381 (398) Q Consensus 320 lR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~i 381 (398) .+.+++...+++...+|+++++..+|.+|+.....+..++.++..+....+.. .+++...+ T Consensus 138 ~p~i~~~~~~~~~~~i~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~li 198 (203) T d3dhwa1 138 LPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVL-LVILVYLI 198 (203) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSTTCCHHHHHHHHHHHSSCCTTHHHHHHHH-HHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHH T ss_conf 99999999999999999999999997759999999999874028999999999-99999999 No 2 >d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]} Probab=99.73 E-value=4.6e-16 Score=113.84 Aligned_cols=165 Identities=15% Similarity=0.101 Sum_probs=129.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC Q ss_conf 99999999999999999999999999999626424678779999999950146999999999987301210344410372 Q gi|254780171|r 89 ILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFG 168 (398) Q Consensus 89 ~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~ 168 (398) +...+.||+.+++.+.++++++|+.+|..--..++..++.......+-.-+|..+-.+.|.... ...+ T Consensus 47 ~~~~~~nSl~~~~~~~~i~~i~g~~la~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~-~~~~----------- 114 (252) T d2onkc1 47 VWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVF-GSSG----------- 114 (252) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHSCHHHHHHHHHHHH-STTS----------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHC-CCCC----------- T ss_conf 9999999999999999999999999999998731321689999987521687177777776412-3321----------- Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH Q ss_conf 03520100035453556700468877889999999999999986431122332045542101035589997654443322 Q gi|254780171|r 169 MFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDK 248 (398) Q Consensus 169 ~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 248 (398) ....+. T Consensus 115 -------~~~~~~------------------------------------------------------------------- 120 (252) T d2onkc1 115 -------LIGSFS------------------------------------------------------------------- 120 (252) T ss_dssp -------TTTTTC------------------------------------------------------------------- T ss_pred -------CCCCCC------------------------------------------------------------------- T ss_conf -------000124------------------------------------------------------------------- Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10013111268214878999999999997787999999999834636789998968998998889876899999741047 Q gi|254780171|r 249 PVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLT 328 (398) Q Consensus 249 p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~ 328 (398) +......+...+++.+.+.-.|...+.++|++++||++.|||+++|.|++|++|+|++|++.+.+++... T Consensus 121 ----------~~~~~~~~~~iii~~~~~~~p~~~~~~~~~~~~i~~~~~eaA~~lGas~~~~~~~i~lP~~~p~i~~~~~ 190 (252) T d2onkc1 121 ----------PLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAI 190 (252) T ss_dssp ----------SSCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHH T ss_pred ----------CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHH T ss_conf ----------5442001332110100112110368999999750388887887669983325469870876889999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999975499999999999 Q gi|254780171|r 329 SQYLNLLKNSSLAVAVGFADL 349 (398) Q Consensus 329 nq~i~l~K~SSLa~~Ig~~dl 349 (398) -+++..+||-+....+|..+- T Consensus 191 l~~~~~~~~~~~~~~~~~~~~ 211 (252) T d2onkc1 191 MSWARGISEFGAVVVIAYYPM 211 (252) T ss_dssp HHHHHHHHCCHHHHTTCCSSC T ss_pred HHHHHHHHHHHHHHHHCCCCC T ss_conf 999889999888751148985 No 3 >d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]} Probab=99.67 E-value=1.1e-14 Score=105.47 Aligned_cols=169 Identities=16% Similarity=0.149 Sum_probs=128.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC Q ss_conf 99999999999999999999999999999962642467877999999995014699999999998730121034441037 Q gi|254780171|r 88 AILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPF 167 (398) Q Consensus 88 a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~ 167 (398) .+...+.||+.+++.+.+++.++|..++..--..++-.|+.......+-.-+|..+--+.|+...-... T Consensus 44 ~~~~~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~~~~~~~~~~~~l~~~p~~ip~vv~~~~~~~~~~~~~----------- 112 (248) T d3d31c1 44 SVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRG----------- 112 (248) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTTS----------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC----------- T ss_conf 999999999999999999999999999999986465125689999999999997200024452034321----------- Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH Q ss_conf 20352010003545355670046887788999999999999998643112233204554210103558999765444332 Q gi|254780171|r 168 GMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFD 247 (398) Q Consensus 168 ~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~ 247 (398) ....+ T Consensus 113 --------~~~~~------------------------------------------------------------------- 117 (248) T d3d31c1 113 --------LIGEP------------------------------------------------------------------- 117 (248) T ss_dssp --------TTTGG------------------------------------------------------------------- T ss_pred --------CCCCC------------------------------------------------------------------- T ss_conf --------11112------------------------------------------------------------------- Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 21001311126821487899999999999778799999999983463678999896899899888987689999974104 Q gi|254780171|r 248 KPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPL 327 (398) Q Consensus 248 ~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l 327 (398) ........+.+.+.+++.+.....|....++++++++|+.+.|||+++|.|++|++|+|++||+.+.++... T Consensus 118 --------~~~~~~~~~~~~~iii~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~I~lP~~~p~i~~~~ 189 (248) T d3d31c1 118 --------LESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGS 189 (248) T ss_dssp --------GTTTCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHH T ss_pred --------CCCCCCCCCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf --------222112456420010011011003688888999971033689998763104234778988999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 78999999754999999999999 Q gi|254780171|r 328 TSQYLNLLKNSSLAVAVGFADLV 350 (398) Q Consensus 328 ~nq~i~l~K~SSLa~~Ig~~dl~ 350 (398) .-.+...+++......+|..+.+ T Consensus 190 ~l~f~~~~~~~~~~~~l~~~~~~ 212 (248) T d3d31c1 190 VMTWARAISEFGAVVILAYYPMV 212 (248) T ss_dssp HHHHHHHHTCCHHHHHHHCTTCC T ss_pred HHHHHHHHHHHHHHHHHCCCCCH T ss_conf 99999999999988733189840 No 4 >d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} Probab=99.54 E-value=7.8e-13 Score=94.15 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=134.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 86526999999999999999999999999999999996264246787799999999501469999999999873012103 Q gi|254780171|r 81 SDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPD 160 (398) Q Consensus 81 ~~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~ 160 (398) .++.+++++..-+.||+..++++.++++.+|+.++..-..++.-.|++-+.-+-+-.-+|..+--+.|++.......... T Consensus 9 ~d~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~~lA~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~~g~~~ 88 (244) T d2r6gf2 9 TDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEIN 88 (244) T ss_dssp TCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCSSSSHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 29527999999999999999999999999999999999847420478999999999984088999999998752355146 Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHH Q ss_conf 44410372035201000354535567004688778899999999999999864311223320455421010355899976 Q gi|254780171|r 161 HSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIAL 240 (398) Q Consensus 161 ~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~ 240 (398) ......+ + T Consensus 89 ~~l~~~~------------------------------------------------~------------------------ 96 (244) T d2r6gf2 89 MMLSALF------------------------------------------------G------------------------ 96 (244) T ss_dssp HHHHHTS------------------------------------------------S------------------------ T ss_pred HHHHHHC------------------------------------------------C------------------------ T ss_conf 6665530------------------------------------------------2------------------------ Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 54443322100131112682148789999999999977879999999998346367899989689989988898768999 Q gi|254780171|r 241 KYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAM 320 (398) Q Consensus 241 ~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAl 320 (398) .+.+.. ......+.+.+++.+.....|..-+++++++++||.+.|||+..|-+++|++|+|++|+.. T Consensus 97 -----~~~~~~--------~~~~~~~~~i~i~~v~~~~p~~~l~~~~~l~~I~~~l~EAA~idGAs~~~~f~~I~lPl~~ 163 (244) T d2r6gf2 97 -----VKPAWF--------SDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLI 163 (244) T ss_dssp -----CCCCTT--------TSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTH T ss_pred -----CCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCH T ss_conf -----677410--------1277999999999999710277999999997599999899997499765774999854468 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9974104789999997549999999 Q gi|254780171|r 321 RSIIPPLTSQYLNLLKNSSLAVAVG 345 (398) Q Consensus 321 R~~iP~l~nq~i~l~K~SSLa~~Ig 345 (398) ..++....-+++...|+=.....++ T Consensus 164 p~i~~~~il~fi~~~~~f~~~~~l~ 188 (244) T d2r6gf2 164 KPLTPLMIASFAFNFNNFVLIQLLT 188 (244) T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHC T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHC T ss_conf 9999999999999720056764425 No 5 >d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]} Probab=99.38 E-value=3.5e-11 Score=84.03 Aligned_cols=78 Identities=19% Similarity=0.102 Sum_probs=65.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999997787999999999834636789998968998998889876899999741047899999975499999999 Q gi|254780171|r 269 LYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGF 346 (398) Q Consensus 269 ~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~ 346 (398) +++.....+-+|..=+++++++++|+.+.|||+.+|-+++|++|+|++|.....++-...=.++...+|=......+- T Consensus 155 ~ii~~~~~~~pf~~~~~~~~l~~i~~~l~EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~~~~f~~~~~~~~ 232 (290) T d2r6gg1 155 GVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLR 232 (290) T ss_dssp HHHHHHTTTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHCC T ss_pred HHHHHCCCCEEEEEECCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCC T ss_conf 442223550364200132054111166665686539977888899888863125666787876644110114411137 No 6 >d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]} Probab=78.85 E-value=1.3 Score=19.57 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=31.7 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH Q ss_conf 7879999999998346367899989689989988898 Q gi|254780171|r 278 AAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398) Q Consensus 278 aAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398) ..+-.+.++.+++.-.--|.+||+.||++|...++++ T Consensus 47 ~e~E~~~i~~aL~~~~gn~~~aA~~LGisR~tL~~kl 83 (89) T d1etxa_ 47 AEVEQPLLDMVMQYTRGNATRAALMMGINRGTLRKKL 83 (89) T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999999999929969999999897899999999 No 7 >d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]} Probab=75.60 E-value=1.8 Score=18.80 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH Q ss_conf 79999999998346367899989689989988898 Q gi|254780171|r 280 FIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398) Q Consensus 280 yiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398) .--|.+..+++.-+--+.+||+.||+|+...+|++ T Consensus 20 ~Er~~I~~aL~~~~gn~~~aA~~LGIsR~TL~rkm 54 (60) T d1umqa_ 20 VRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRIL 54 (60) T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH T ss_conf 99999999999966859999999898899999999 No 8 >d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]} Probab=73.35 E-value=1.7 Score=18.90 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=31.2 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH Q ss_conf 7879999999998346367899989689989988898 Q gi|254780171|r 278 AAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398) Q Consensus 278 aAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398) ..+=-+.++..++.-.--|.+||+.||++|...++++ T Consensus 49 ~~~E~~lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~Kl 85 (91) T d1ntca_ 49 PELERTLLTTALRHTQGHKQEAARLLGWGAATLTAKL 85 (91) T ss_dssp HHHHHHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999999999959959999999798899999999 No 9 >d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Probab=58.95 E-value=4.1 Score=16.59 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH Q ss_conf 7879999999998346367899989689989988898 Q gi|254780171|r 278 AAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398) Q Consensus 278 aAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398) ..|=-|.++.+++.- .+..+||+.||+++...+|++ T Consensus 19 ~~~Er~~I~~aL~~~-gn~~~aA~~Lgisr~tL~rKl 54 (61) T d1g2ha_ 19 GFYEAQVLKLFYAEY-PSTRKLAQRLGVSHTAIANKL 54 (61) T ss_dssp SHHHHHHHHHHHHHS-CSHHHHHHHTTSCTHHHHHHH T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHCCCHHHHHHHH T ss_conf 999999999999987-899999999798899999999 No 10 >d1i3ja_ d.285.1.1 (A:) DNA-binding domain of intron endonuclease I-TevI {Bacteriophage T4 [TaxId: 10665]} Probab=50.65 E-value=5.3 Score=15.94 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=18.6 Q ss_pred HHHHHHHHHHCCCHHHHHHHHH Q ss_conf 3678999896899899888987 Q gi|254780171|r 294 RGQMEAAIALGLTHRKATRLVL 315 (398) Q Consensus 294 kGQ~EAA~aLGls~~q~~r~VI 315 (398) ....|||++||.+.....+++- T Consensus 65 ~S~~EAar~lgi~~~tI~~R~k 86 (96) T d1i3ja_ 65 DCAADAARHFKISSGLVTYRVK 86 (96) T ss_dssp SSHHHHHHHHTCCHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHC T ss_conf 0699999994898378999975 No 11 >d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]} Probab=20.11 E-value=19 Score=12.62 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=26.8 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH Q ss_conf 977879999999998346367899989689989988898 Q gi|254780171|r 276 YTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398) Q Consensus 276 ~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398) |+..|=-++|+-....=.....|.|+.+|.++.+..+.+ T Consensus 6 Ys~EfK~~aV~l~~~~~g~s~~~vA~~lGIs~~tl~~W~ 44 (89) T d2jn6a1 6 YSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWI 44 (89) T ss_dssp CCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 999999999999998299859999999798988999999 Done!