BLAST/PSIBLAST alignment of GI: 254780171 and GI: 116251959 at iteration 1
>gi|116251959|ref|YP_767797.1| general L-amino acid transport system permease [Rhizobium leguminosarum bv. viciae 3841] Length = 400
>gi|3182888|sp|Q52813|AAPQ_RHIL3 RecName: Full=General L-amino acid transport system permease protein AapQ Length = 400
>gi|1154895|emb|CAA57934.1| general amino acid ABC type transporter [Rhizobium leguminosarum] Length = 400
>gi|115256607|emb|CAK07695.1| General L-amino acid transport system permease [Rhizobium leguminosarum bv. viciae 3841] Length = 400
Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/379 (55%), Positives = 267/379 (70%)
Query: 19 LYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVP 78
+YD + +I QI+ ++L W +N N+ +SN + G GFL RAGFEI Q ++
Sbjct: 22 MYDPKYRSIFYQILTIVILVGFVWWVAHNTAVNLARSNTASGFGFLRGRAGFEIGQSLIT 81
Query: 79 YTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRN 138
++SDS+YA A+LVG +NT +A +G+ ATIIG L+G GRLS N L+A +C VYVEVFRN
Sbjct: 82 FSSDSTYARALLVGILNTLLVAVTGIFTATIIGFLIGIGRLSRNWLIAKLCTVYVEVFRN 141
Query: 139 IPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGI 198
IPPL+VIFF Y VLSVLP P S+ LPF M+LNNRGL+FP DT + V+ I
Sbjct: 142 IPPLLVIFFWYLGVLSVLPQPRESVGLPFSMYLNNRGLAFPKPIFDTGMIAVGIALVIAI 201
Query: 199 VLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIG 258
V S+ R + TG+ ++ + LI GLP LV + + L FD PV G+FN G
Sbjct: 202 VASIIIARWAHKRQAATGQPFHTVWTAIALIVGLPLLVFVVSGFPLTFDVPVAGKFNLTG 261
Query: 259 GSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQ 318
GS V PEFMSL++ALS YTA+FIAEIVR G+ VP+GQ EAA ALGL TRLV++PQ
Sbjct: 262 GSVVGPEFMSLFLALSFYTASFIAEIVRGGIRGVPKGQSEAAGALGLHPSSVTRLVVVPQ 321
Query: 319 AMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLS 378
A+R IIPPLTSQYLNL KNSSLA+A+GF+DLV+VGGTI+NQ+GQAIEI+ IW +YLSLS
Sbjct: 322 ALRIIIPPLTSQYLNLTKNSSLAIAIGFSDLVAVGGTILNQSGQAIEIVCIWGIVYLSLS 381
Query: 379 IMIALFMNRLNAKIALKEK 397
I+ +LFMN NAK+AL E+
Sbjct: 382 ILTSLFMNWFNAKMALVER 400