BLAST/PSIBLAST alignment of GI: 254780171 and GI: 116251959 at iteration 1
>gi|116251959|ref|YP_767797.1| general L-amino acid transport system permease [Rhizobium leguminosarum bv. viciae 3841] Length = 400
>gi|3182888|sp|Q52813|AAPQ_RHIL3 RecName: Full=General L-amino acid transport system permease protein AapQ Length = 400
>gi|1154895|emb|CAA57934.1| general amino acid ABC type transporter [Rhizobium leguminosarum] Length = 400
>gi|115256607|emb|CAK07695.1| General L-amino acid transport system permease [Rhizobium leguminosarum bv. viciae 3841] Length = 400
 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/379 (55%), Positives = 267/379 (70%)

Query: 19  LYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVP 78
           +YD +  +I  QI+  ++L     W  +N   N+ +SN + G GFL  RAGFEI Q ++ 
Sbjct: 22  MYDPKYRSIFYQILTIVILVGFVWWVAHNTAVNLARSNTASGFGFLRGRAGFEIGQSLIT 81

Query: 79  YTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRN 138
           ++SDS+YA A+LVG +NT  +A +G+  ATIIG L+G GRLS N L+A +C VYVEVFRN
Sbjct: 82  FSSDSTYARALLVGILNTLLVAVTGIFTATIIGFLIGIGRLSRNWLIAKLCTVYVEVFRN 141

Query: 139 IPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGI 198
           IPPL+VIFF Y  VLSVLP P  S+ LPF M+LNNRGL+FP    DT       + V+ I
Sbjct: 142 IPPLLVIFFWYLGVLSVLPQPRESVGLPFSMYLNNRGLAFPKPIFDTGMIAVGIALVIAI 201

Query: 199 VLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIG 258
           V S+   R +      TG+    ++ +  LI GLP LV +   + L FD PV G+FN  G
Sbjct: 202 VASIIIARWAHKRQAATGQPFHTVWTAIALIVGLPLLVFVVSGFPLTFDVPVAGKFNLTG 261

Query: 259 GSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQ 318
           GS V PEFMSL++ALS YTA+FIAEIVR G+  VP+GQ EAA ALGL     TRLV++PQ
Sbjct: 262 GSVVGPEFMSLFLALSFYTASFIAEIVRGGIRGVPKGQSEAAGALGLHPSSVTRLVVVPQ 321

Query: 319 AMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLS 378
           A+R IIPPLTSQYLNL KNSSLA+A+GF+DLV+VGGTI+NQ+GQAIEI+ IW  +YLSLS
Sbjct: 322 ALRIIIPPLTSQYLNLTKNSSLAIAIGFSDLVAVGGTILNQSGQAIEIVCIWGIVYLSLS 381

Query: 379 IMIALFMNRLNAKIALKEK 397
           I+ +LFMN  NAK+AL E+
Sbjct: 382 ILTSLFMNWFNAKMALVER 400