RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780171|ref|YP_003064584.1| ABC transporter membrane
spanning protein (amino acid) [Candidatus Liberibacter asiaticus str.
psy62]
(398 letters)
>gnl|CDD|34232 COG4597, BatB, ABC-type amino acid transport system, permease
component [Amino acid transport and metabolism].
Length = 397
Score = 402 bits (1033), Expect = e-112
Identities = 188/384 (48%), Positives = 247/384 (64%)
Query: 14 SRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEID 73
+YD V I Q++ + L I W V N N+++ ++ G FL RAGF+I
Sbjct: 14 KGSSLIYDPTVRGIFFQLLAVVALAGIVYWIVGNTVTNLQRRGIASGFAFLDGRAGFDIG 73
Query: 74 QGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYV 133
Q ++ YTSDS+Y A +VG +NT +A G+I ATIIG L+G RLS N L+ + VYV
Sbjct: 74 QTLIAYTSDSTYGRAFIVGLLNTLLVAALGIITATIIGFLIGIARLSDNWLIRKLSTVYV 133
Query: 134 EVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFS 193
E+FRNIPPL+ IFF Y VLSVLP S+ LP +FL+NRGL FP+ F+ +
Sbjct: 134 EIFRNIPPLLQIFFWYFGVLSVLPGARQSVSLPDLIFLSNRGLYFPSPQWGEGFIAFILA 193
Query: 194 FVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQ 253
V+ IV S+F R ++ TG+ + LI GLP L L FD P LG
Sbjct: 194 LVMAIVASVFLARWAKTRQIATGQQFRTWPTAAVLIIGLPLLAQWLFGAPLTFDVPALGG 253
Query: 254 FNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRL 313
FN GG V PEF +L++ALS YTAAFIAEIVR+G+ AV +GQ EAA +LGL RL
Sbjct: 254 FNLTGGMVVIPEFAALFLALSFYTAAFIAEIVRAGIQAVSKGQTEAARSLGLRSSLTLRL 313
Query: 314 VLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFI 373
V++PQA+R IIPPLTSQYLNL KNSSLA+A+G+ DLV+V GT++NQTGQA+E++ IWM +
Sbjct: 314 VIVPQALRIIIPPLTSQYLNLTKNSSLAIAIGYPDLVAVAGTVLNQTGQAVEVVAIWMLV 373
Query: 374 YLSLSIMIALFMNRLNAKIALKEK 397
YLSLS+ +L MN N ++AL E+
Sbjct: 374 YLSLSLTTSLLMNWYNRRMALVER 397
>gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease
component [Amino acid transport and metabolism].
Length = 222
Score = 131 bits (330), Expect = 4e-31
Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 13/206 (6%)
Query: 188 KIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFD 247
+ + S VLG+VL L L R K + L Y+ F G P LV + Y
Sbjct: 27 LLTLLSIVLGLVLGLLLA-LMRLSGNKPLRWLARAYVEIFR--GTPLLVQLFFIY----- 78
Query: 248 KPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTH 307
G +G F + IALS + A++AEIVR+G+ +VP+GQ EAA ALGLT+
Sbjct: 79 ---FGLLPLLGIEL--DPFTAAVIALSLNSGAYLAEIVRAGIQSVPKGQWEAARALGLTY 133
Query: 308 RKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEII 367
+ R V+LPQA+R I+PPL +Q+++L+K++SL +G +L I +T + E+
Sbjct: 134 WQTMRYVILPQALRVILPPLGNQFISLIKDTSLVSVIGVVELTRAAQIIAARTFRPFEVY 193
Query: 368 LIWMFIYLSLSIMIALFMNRLNAKIA 393
L+ IYL L + ++L RL ++A
Sbjct: 194 LLAALIYLILCLPLSLLSRRLERRLA 219
Score = 62.8 bits (153), Expect = 2e-10
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 81 SDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIP 140
+ Y +L G + T L ++ ++G L+ RLS NK + W+ R YVE+FR P
Sbjct: 10 LNLDYLPFLLKGLLVTLLLTLLSIVLGLVLGLLLALMRLSGNKPLRWLARAYVEIFRGTP 69
Query: 141 PLVVIFFLYKSVLSVLPI 158
LV +FF+Y +L +L I
Sbjct: 70 LLVQLFFIYFGLLPLLGI 87
>gnl|CDD|33942 COG4215, ArtQ, ABC-type arginine transport system, permease
component [Amino acid transport and metabolism].
Length = 230
Score = 89.5 bits (222), Expect = 2e-18
Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 12/211 (5%)
Query: 187 AKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHF 246
++ V S +LG++L L L + + + L +Y T +I G+P L+LI L Y F
Sbjct: 18 LELAVCSLILGLLLGLLGA-LGKLSKNRLLRLLGNVY--TTVIRGVPELLLILLIY---F 71
Query: 247 DKPVL-----GQFNFIGGSTVS-PEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAA 300
+L +G + F++ IAL A+ E +R AVP+GQ+EAA
Sbjct: 72 GGQILLNTLADVTGALGVGFIDISPFVAGVIALGLIFGAYATETLRGAFKAVPKGQIEAA 131
Query: 301 IALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQT 360
ALGL+ + R ++LPQ R +P L + +L LLK+++L +G DL+ T
Sbjct: 132 RALGLSRSQTFRRIVLPQMWRHALPGLGNLWLVLLKDTALVSLIGLNDLMRQTQLAAGST 191
Query: 361 GQAIEIILIWMFIYLSLSIMIALFMNRLNAK 391
+ ++ IYL ++++ + + L +
Sbjct: 192 KEPFTFYIVAALIYLVITLVSNVVLLFLERR 222
Score = 49.4 bits (118), Expect = 2e-06
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 82 DSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPP 141
+ + +L G + T LA +I ++G L G+LS N+L+ + VY V R +P
Sbjct: 3 LAGWGDELLQGALVTLELAVCSLILGLLLGLLGALGKLSKNRLLRLLGNVYTTVIRGVPE 62
Query: 142 LVVIFFLY 149
L++I +Y
Sbjct: 63 LLLILLIY 70
>gnl|CDD|33906 COG4160, ArtM, ABC-type arginine/histidine transport system,
permease component [Amino acid transport and
metabolism].
Length = 228
Score = 87.5 bits (217), Expect = 6e-18
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 14/210 (6%)
Query: 193 SFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLG 252
S V+G VL+L L+R + Y ++ G P LV + L Y LG
Sbjct: 27 SLVIGFVLALPLA-LARVSKNRWVSWPARAYT--YVFRGTPLLVQLFLIYY------GLG 77
Query: 253 QFNFIGGSTV-----SPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTH 307
QF +I S + +AL+ TAA+ EI R + AVPRGQ EAA ALG++
Sbjct: 78 QFEWIRESIFLWPFLREAWFCAVLALTLNTAAYTTEIFRGAIRAVPRGQWEAARALGMSR 137
Query: 308 RKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEII 367
K R ++LP A+R +P +++ + +LK+++LA + DL+ I ++T E+
Sbjct: 138 FKTLRRIILPSALRRALPAYSNEVILMLKSTALASTITVMDLMGYARLINSRTYDPYEVF 197
Query: 368 LIWMFIYLSLSIMIALFMNRLNAKIALKEK 397
I IYL ++ ++ L + + +
Sbjct: 198 GIAGAIYLIITGILTLLFRLIERRWLAHLR 227
Score = 46.7 bits (111), Expect = 1e-05
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 85 YATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVV 144
Y +L G T WL ++ ++ + R+S N+ V+W R Y VFR P LV
Sbjct: 9 YLPRLLSGLATTLWLLIISLVIGFVLALPLALARVSKNRWVSWPARAYTYVFRGTPLLVQ 68
Query: 145 IFFLYKSVLSVLPIPDHSIVLPF 167
+F +Y + I + + PF
Sbjct: 69 LFLIYYGLGQFEWIRESIFLWPF 91
>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette
(ABC) transporters which generally bind type 2 PBPs.
These types of transporters consist of a PBP, two TMs,
and two cytoplasmic ABC ATPase subunits, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. For these transporters the ABCs and TMs are on
independent polypeptide chains. These systems transport
a diverse range of substrates. Most are specific for a
single substrate or a group of related substrates;
however some transporters are more promiscuous,
transporting structurally diverse substrates such as the
histidine/lysine and arginine transporter in
Enterobacteriaceae. In the latter case, this is achieved
through binding different PBPs with different
specificities to the TMs. For other promiscuous
transporters such as the multiple-sugar transporter Msm
of Streptococcus mutans, the PBP has a wide substrate
specificity. These transporters include the
maltose-maltodextrin, phosphate and sulfate
transporters, among others..
Length = 190
Score = 57.3 bits (139), Expect = 6e-09
Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 15/194 (7%)
Query: 190 FVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249
+ + VLG++L + R K GK LL L+ LP+LVL L L
Sbjct: 12 TLLALVLGLLLGIILAR-------KRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLL 64
Query: 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRK 309
G +G + I A F I R+ L ++P+ +EAA ALG + +
Sbjct: 65 GWGILPGLGLPAL--------ILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQ 116
Query: 310 ATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILI 369
R ++LP A+ I+ L + L +L +G + G ++ L
Sbjct: 117 IFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLG 176
Query: 370 WMFIYLSLSIMIAL 383
+ ++++L
Sbjct: 177 VAAAVALILLLLSL 190
Score = 37.3 bits (87), Expect = 0.008
Identities = 15/79 (18%), Positives = 31/79 (39%)
Query: 93 FVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSV 152
+NT LA + A ++G L+G + + R +++ ++P LV+ L
Sbjct: 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF 60
Query: 153 LSVLPIPDHSIVLPFGMFL 171
+L + + L
Sbjct: 61 GVLLGWGILPGLGLPALIL 79
>gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease
component [Inorganic ion transport and metabolism].
Length = 222
Score = 48.6 bits (116), Expect = 3e-06
Identities = 35/156 (22%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 190 FVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249
+F+F++G+ L + + +L ++ +P ++L+
Sbjct: 29 TLFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSAIVNILRSIPFIILLVA--------- 79
Query: 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRK 309
++ I G+++ + + L+ A F+A +V S L V +G +EAA A+G + +
Sbjct: 80 LIPLTRLIVGTSIGTT--AAIVPLTIGAAPFVARLVESALREVDKGVIEAAQAMGASPWQ 137
Query: 310 ATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG 345
R VLLP+A+ ++ +T ++L+ S++A A+G
Sbjct: 138 IIRKVLLPEALPGLVSGITVTLISLIGYSAMAGAIG 173
Score = 30.5 bits (69), Expect = 0.93
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 79 YTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVG-------AGRLSANKLVAWICRV 131
+ + + T ++ F + A +IG +G G L NKL+ I
Sbjct: 4 AMMSNDLWQLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSA 63
Query: 132 YVEVFRNIPPLVVIFFL 148
V + R+IP ++++ L
Sbjct: 64 IVNILRSIPFIILLVAL 80
>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system
inner membrane component. The alignments cover the most
conserved region of the proteins, which is thought to be
located in a cytoplasmic loop between two transmembrane
domains. The members of this family have a variable
number of transmembrane helices.
Length = 183
Score = 43.4 bits (103), Expect = 1e-04
Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 266 FMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIP 325
+ I A + I R+ L ++P +EAA ALG + + R ++LP A+ I+
Sbjct: 52 ILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILT 111
Query: 326 PLTSQYLNLLKNSSLAVAVGFADLVS---VGGTIINQTGQAIEIILIWMFIYLSLSIMIA 382
L + L + L +G + + + + +L I L L++++
Sbjct: 112 GLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVD 171
Query: 383 LFMNRLNAKI 392
+ L+ ++
Sbjct: 172 ILQRLLDPRV 181
>gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 310
Score = 38.7 bits (90), Expect = 0.003
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 228 LIFGLPTLV--LIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIV 285
L+ G+P++V L F + V G ++ I L+ IA +
Sbjct: 125 LLAGIPSVVYGFFGLFVLAPFLRDVFGPPLGFNLGPFGISILTAGIVLAIMILPTIASLS 184
Query: 286 RSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSII 324
R L AVPR EAA ALG T + R V+LP A I+
Sbjct: 185 RDALRAVPRSLREAAYALGATKWETIRKVILPAARSGIV 223
>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component
[Inorganic ion transport and metabolism].
Length = 540
Score = 37.5 bits (87), Expect = 0.007
Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 5/137 (3%)
Query: 191 VFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVL-IALKYQLHFDKP 249
V +L +VL + L + + L L +I P V+ +A P
Sbjct: 66 VLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVI---PPFVVALAWISLFGPSGP 122
Query: 250 VLGQFNFIGGSTVSPEFMS-LYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHR 308
+ +G + S + + +AL + +V + L +P EAA LG +
Sbjct: 123 LAALLELLGFESPSIYGLGGILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLGASRW 182
Query: 309 KATRLVLLPQAMRSIIP 325
+ R V LP +I
Sbjct: 183 QVFRKVTLPLLRPAIAA 199
Score = 27.9 bits (62), Expect = 4.4
Identities = 48/252 (19%), Positives = 97/252 (38%), Gaps = 12/252 (4%)
Query: 142 LVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIF-VFSFVLGIVL 200
+++ L+ +L +L + S VL +G L+ S N+ + + + +L +VL
Sbjct: 293 ALIVLLLFLILLPLLAVVLPSFVLNWGRPLSLVLASPQFWQALLNSLLLALAAALLAVVL 352
Query: 201 SLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGS 260
+L R + + L L + L +P +V +AL L F P + +
Sbjct: 353 ALLLAYAVRRLRSRLSRLLERL---SMLPLAVPGVV-LALGLLLLFRAPDGLLYQPLYT- 407
Query: 261 TVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAM 320
+ L +A + F +R+ L + EAA +LG + + R + LP
Sbjct: 408 -----LLILVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLR 462
Query: 321 RSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWM-FIYLSLSI 379
++ + + S + +G ++ I N + I L +S+
Sbjct: 463 PGLLAAAALVFALSIGELSATLLLGSPGTRTLTVYIYNLLSDGRYGDAAALALILLVVSL 522
Query: 380 MIALFMNRLNAK 391
++ L ++RL
Sbjct: 523 LLFLLLDRLGEG 534
>gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 292
Score = 36.7 bits (85), Expect = 0.012
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 271 IALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSII 324
+AL+ + L AVP EAA ALG T + V+LP A+ II
Sbjct: 149 LALALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQTIFKVVLPAALPGII 202
>gnl|CDD|30946 COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 317
Score = 32.8 bits (75), Expect = 0.18
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 6/150 (4%)
Query: 190 FVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249
+ + +LGI L + A + ++ + L LL IS F L L+++ +L + P
Sbjct: 106 LILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIP-SFWLGLLLILLFSVKLGWL-P 163
Query: 250 VLGQFNFIGGSTVSPEFMSLY---IALSCYTAAFIAEIVRSGLIAVPRGQ-MEAAIALGL 305
V G+ + + L + L + A IA + RS ++ V + A A GL
Sbjct: 164 VGGRGSAGSWDSFLDALKHLILPALTLGLVSLAGIARLTRSSMLEVLNQDYVRTARAKGL 223
Query: 306 THRKATRLVLLPQAMRSIIPPLTSQYLNLL 335
+ R+ L A+ +I L Q LL
Sbjct: 224 SERRILFKHALRNALLPVITVLGLQLGGLL 253
Score = 28.5 bits (64), Expect = 3.6
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 79 YTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGA-GRLSANKLVAWICRVYVEVFR 137
+ A IL T LA +I A ++G +G L + + RV +
Sbjct: 81 FVYKRPVADLILERLPATLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGI 140
Query: 138 NIPPLV---VIFFLYKSVLSVLPIPDHSIVLPFGMFLNN-RGLSFPTLTM 183
+IP ++ L+ L LP+ + FL+ + L P LT+
Sbjct: 141 SIPSFWLGLLLILLFSVKLGWLPVGGRGSAGSWDSFLDALKHLILPALTL 190
>gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 289
Score = 31.8 bits (72), Expect = 0.33
Identities = 27/128 (21%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 260 STVSPEFMSLYIALSCYTAAFIAEIVRSGLIAV-PRGQMEAAIALGLTHRKATRLVLLPQ 318
+ + P ++L +AL+ A IVR ++++ R +EAA ALG + + +LP
Sbjct: 142 AILGPGLLNLILALALVGWPGYARIVRGQVLSLREREYVEAARALGASTLRIIFRHILPN 201
Query: 319 AMRSIIPPLTSQYLN-LLKNSSLA-VAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLS 376
+ +I T +L + L+ + +G GT++ + + W+ ++
Sbjct: 202 VLPPLIVLATLDIGGAILAEAGLSFLGLGVQPPTPSWGTMLAEGRNYLLTGAWWLVLFPG 261
Query: 377 LSIMIALF 384
L+I++ +
Sbjct: 262 LAILLTVL 269
>gnl|CDD|31367 COG1174, OpuBB, ABC-type proline/glycine betaine transport systems,
permease component [Amino acid transport and
metabolism].
Length = 221
Score = 31.3 bits (71), Expect = 0.49
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 271 IALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSII 324
IAL Y+ I +GL +VP +EAA +G+T + V LP A+ I+
Sbjct: 95 IALFLYSLLPIVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVELPLALPVIL 148
>gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease
component [Posttranslational modification, protein
turnover, chaperones].
Length = 274
Score = 30.2 bits (68), Expect = 0.96
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 7/144 (4%)
Query: 181 LTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIAL 240
LT+ T + + V G+ L+ R ++ GK L + L F LPT V
Sbjct: 61 LTLLTAFAATLLNLVFGLPLAWVLVR-----YDFPGKRLVDALVD--LPFALPTAVAGIA 113
Query: 241 KYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAA 300
L +LG G + + + +A+ + F+ V+ L + R EAA
Sbjct: 114 LLLLFGPNGLLGSLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAA 173
Query: 301 IALGLTHRKATRLVLLPQAMRSII 324
+LG + + R V+LP + +++
Sbjct: 174 RSLGASPLQTFRRVILPLLLPALL 197
>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
proteins, ABC superfamily [Lipid transport and
metabolism, General function prediction only].
Length = 885
Score = 29.2 bits (65), Expect = 1.9
Identities = 28/207 (13%), Positives = 57/207 (27%), Gaps = 21/207 (10%)
Query: 44 CVNNVYNNMEKSNLSLGIGFL---SERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLA 100
NN + L LG L +G + +P + + F L
Sbjct: 247 LFNNKGLHTLPFLLGLGSNALRRALNLSGISVLNEPMPLSGAQLSLDLLADLLGALFLLF 306
Query: 101 FSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPD 160
++ + + +L+ R + I + + ++ +L +L +
Sbjct: 307 VFLLLFSVFLLSLI-LERQQRLRHQQLIAGLSP------STYWLFALVWDLLLYLLIL-- 357
Query: 161 HSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALP 220
+ L L F + I + + LS F K A
Sbjct: 358 --------LILLIFVLIFGFFAGNNTVIILLLLLLYIRSAIPLTYILSFIF-SKESTASV 408
Query: 221 LLYISTFLIFGLPTLVLIALKYQLHFD 247
+L I + L + L+ +
Sbjct: 409 ILSIYNLISGLLVFFAVFILQSFANGR 435
>gnl|CDD|39021 KOG3817, KOG3817, KOG3817, Uncharacterized conserved protein
[Function unknown].
Length = 452
Score = 29.2 bits (65), Expect = 2.1
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 194 FVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFG-LPTLVLIALKYQLHFDKPVLG 252
FV+GI+L A RLSR+ + Y S+ ++ G L +L+++ F K +
Sbjct: 143 FVVGILLFFSARRLSRN---------SVFYYSSGIVIGILASLLVVIFLVARFFPKKTMM 193
Query: 253 QFNFIGGSTVS 263
IGG ++S
Sbjct: 194 YGILIGGWSIS 204
>gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system,
permease component II [Amino acid transport and
metabolism].
Length = 267
Score = 29.0 bits (65), Expect = 2.6
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 256 FIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVL 315
+ F ++ +A + F+ +V + L R EAA LG + + R V
Sbjct: 125 LFAALGLPGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVT 184
Query: 316 LPQAMRSII 324
LP + I+
Sbjct: 185 LPLILPGIL 193
>gnl|CDD|34516 COG4907, COG4907, Predicted membrane protein [Function unknown].
Length = 595
Score = 28.8 bits (64), Expect = 3.0
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 12/81 (14%)
Query: 127 WICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTN 186
W V E+ R +++ L +FL + + +T
Sbjct: 405 WSSYVVNEMNRKRGLKYEHIGCVATIIFAL------------VFLYFAFIGLLSTAFNTV 452
Query: 187 AKIFVFSFVLGIVLSLFATRL 207
+F+F LGI+L A
Sbjct: 453 NTLFIFFVPLGIILFFSAGST 473
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 27.5 bits (61), Expect = 5.9
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 5 ARKTVTRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFL 64
R+ + +S F + I ++ + L +I + + Y K L F+
Sbjct: 1186 YRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIG-FYWTASKFFWFLLFMFI 1244
Query: 65 SERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSG-MIPATII 110
+ +V T + A A++ +FW FSG + P ++I
Sbjct: 1245 FFLYFTTLGMMLVSLTPNLQTA-AVIASLFFSFWNLFSGFLQPRSLI 1290
>gnl|CDD|35810 KOG0590, KOG0590, KOG0590, Checkpoint kinase and related
serine/threonine protein kinases [Cell cycle control,
cell division, chromosome partitioning].
Length = 601
Score = 27.3 bits (60), Expect = 7.1
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 20 YDMRVHNI-SVQIILALLLTVIFLWCVNNVYNNMEKSNLSLG 60
YD R ++ S II ++ F W V +N K+N
Sbjct: 501 YDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSD 542
>gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism].
Length = 258
Score = 27.1 bits (60), Expect = 8.1
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 14/98 (14%)
Query: 285 VRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAV 344
G+ +V +E A LG + + R V+LP A+ I + L +A+
Sbjct: 144 TLDGVRSVDPDLLELARTLGASRWQILRKVILPAALPYIF-------------TGLRIAI 190
Query: 345 GFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIA 382
G A + V ++ + +++ L ++ A
Sbjct: 191 GLAWIGLVVAELLG-ASSGLGYLILDARNNLQTDLVFA 227
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.329 0.142 0.417
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,797,502
Number of extensions: 272251
Number of successful extensions: 1295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1275
Number of HSP's successfully gapped: 156
Length of query: 398
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 302
Effective length of database: 4,189,273
Effective search space: 1265160446
Effective search space used: 1265160446
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.2 bits)