RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid) [Candidatus Liberibacter asiaticus str. psy62] (398 letters) >d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Length = 203 Score = 54.3 bits (130), Expect = 2e-08 Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 11/194 (5%) Query: 190 FVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249 F FV+G+ + + K + + +P ++L+ Sbjct: 19 GFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIV 78 Query: 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRK 309 + + L+ A FIA +V + L+ +P G +EA+ A+G T + Sbjct: 79 GTS-----------IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQ 127 Query: 310 ATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILI 369 R VLLP+A+ ++ T + L+ S++ AVG L +G A + + Sbjct: 128 IVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTV 187 Query: 370 WMFIYLSLSIMIAL 383 + + + + ++ Sbjct: 188 LVLLVILVYLIQFA 201 Score = 32.0 bits (72), Expect = 0.078 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 7/91 (7%) Query: 89 ILVGFVNTFWLAFSGMIPATIIGTLVG-------AGRLSANKLVAWICRVYVEVFRNIPP 141 ++ G T + F +IG VG G++ AN + V +FR+IP Sbjct: 4 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPF 63 Query: 142 LVVIFFLYKSVLSVLPIPDHSIVLPFGMFLN 172 ++++ ++ ++ + + Sbjct: 64 IILLVWMIPFTRVIVGTSIGLQAAIVPLTVG 94 >d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 86 Score = 28.5 bits (64), Expect = 1.0 Identities = 7/15 (46%), Positives = 11/15 (73%) Query: 281 IAEIVRSGLIAVPRG 295 I E+ RSG++ + RG Sbjct: 67 IVEVARSGVVGLSRG 81 >d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 86 Score = 27.7 bits (62), Expect = 1.7 Identities = 7/15 (46%), Positives = 10/15 (66%) Query: 281 IAEIVRSGLIAVPRG 295 I EI R+G+ + RG Sbjct: 66 ILEIARTGVSGLSRG 80 >d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 83 Score = 27.7 bits (62), Expect = 1.8 Identities = 6/15 (40%), Positives = 11/15 (73%) Query: 281 IAEIVRSGLIAVPRG 295 + EI R+G++A+ R Sbjct: 67 VEEIARTGIVAMNRW 81 >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 Score = 26.5 bits (57), Expect = 4.3 Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 5/40 (12%) Query: 95 NTFWLAFSGMIP-----ATIIGTLVGAGRLSANKLVAWIC 129 + F L G+ + V G++ N+ VA Sbjct: 280 DNFTLIPEGVNGIEERMTVVWDKAVATGKMDENQFVAVTS 319 >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 330 Score = 26.5 bits (57), Expect = 4.4 Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 8/41 (19%) Query: 95 NTFWLAFSGMI------PATIIGTLVGAGRLSANKLVAWIC 129 N F +G V GR+S + V + Sbjct: 277 NDFRAIPNGAPGVEERLMMVY--QGVNEGRISLTQFVELVA 315 >d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} Length = 244 Score = 26.1 bits (56), Expect = 5.3 Identities = 26/194 (13%), Positives = 60/194 (30%), Gaps = 10/194 (5%) Query: 186 NAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLH 245 + + L + + + L + + +L I + + ++++ + Sbjct: 24 TVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQS 83 Query: 246 FD-----KPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAA 300 F L S + L I + ++ + L A+P EA+ Sbjct: 84 FGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEAS 143 Query: 301 IALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQT 360 G + + LP ++ + P + + + N L L + G + T Sbjct: 144 AMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQL-----LTNGGPDRLGTT 198 Query: 361 GQAIEIILIWMFIY 374 A L+ + Y Sbjct: 199 TPAGYTDLLVNYTY 212 >d1ta3a_ c.1.8.5 (A:) Xylanase inhibitor protein I, XIP-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 274 Score = 25.1 bits (54), Expect = 10.0 Identities = 6/25 (24%), Positives = 12/25 (48%) Query: 73 DQGIVPYTSDSSYATAILVGFVNTF 97 +G + DS T + + F++ F Sbjct: 17 AEGSLREACDSGMYTMVTMSFLDVF 41 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.329 0.142 0.417 Gapped Lambda K H 0.267 0.0621 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,414,515 Number of extensions: 64381 Number of successful extensions: 168 Number of sequences better than 10.0: 1 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 19 Length of query: 398 Length of database: 2,407,596 Length adjustment: 87 Effective length of query: 311 Effective length of database: 1,213,086 Effective search space: 377269746 Effective search space used: 377269746 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 54 (24.8 bits)