HHsearch alignment for GI: 254780172 and conserved domain: COG4209
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].
Probab=98.55 E-value=2.1e-05 Score=51.32 Aligned_cols=198 Identities=17% Similarity=0.214 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHCCC--------
Q ss_conf 0024787799999999999875677544412-7868899978988887614722-89999999976641558--------
Q gi|254780172|r 173 LWGGLLVTLVISFFGIIISMPLGILLALGRN-SNIPVLRYACITFIELFRGVPL-VTVLFMASIMLPLFLPD-------- 242 (386)
Q Consensus 173 ~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~-s~~~~l~~~~~~~ie~~Rg~Pl-i~~lf~~~~~lp~~lp~-------- 242 (386)
T Consensus 77 ff~i~rNTl~~s~~~li~gf~~pI~lAillnElr~~~~kk~~QT~----~y~PhFlSWVVv~~~v~~fls~d~GiiN~ll 152 (309)
T COG4209 77 FFIILRNTLLYSVLFLILGFPVPIILAILLNELRNKVFKKVVQTI----SYLPHFLSWVVVSGFVFAFLSIDGGIINQLL 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCHHEEEHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 999999999999999999537999999999999877788887663----3300021003056578876366751899999
Q ss_pred ---CC------CCCHHHHH-HHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf ---87------73879999-9999999-8999899999999845866789999962168999999996998998620047
Q gi|254780172|r 243 ---TW------DVDKLLRA-LLGVSAF-ASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIV 311 (386)
Q Consensus 243 ---g~------~~~~~~~a-~i~l~l~-~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~ 311 (386)
T Consensus 153 ~~~g~~pi~fl~~~~wf~~i~i~~~vWK~~G~~SIiylAai~~Idpt~YEAA~vDGA~rwqqiwhITlP~i~P~ivIllI 232 (309)
T COG4209 153 MSLGGDPINFLTNPDWFRPIIIFSSVWKGAGWNSIIYLAAIAGIDPTLYEAAMVDGASRWQQIWHITLPAIRPLIVILLI 232 (309)
T ss_pred HHCCCCCEEHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 98289831021588602678878988842367889999999727999999998054887788882110323149999999
Q ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999996----------12899999999999999997410100355136999999999999999999999999999843
Q gi|254780172|r 312 NTFIGLFK----------DSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLH 381 (386)
Q Consensus 312 n~~i~l~K----------dTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~ 381 (386)
T Consensus 233 L~iG~i~~~gFe~~yll~~~~~~~v~~vld-tYVy~~gl~~Gd----~s-~--sTAaGlf~svVg~iLl~~aN~iakr~~ 304 (309)
T COG4209 233 LNIGNIFNAGFELFYLLPNPSGYDVTEVLD-TYVYRGGLVTGD----YS-Y--STAAGLFQSVVGFILLFLANRIAKRFD 304 (309)
T ss_pred HHHHHHHHCCHHHEEEECCCCCCCHHHHHH-HHHHHHCCCCCC----CC-H--HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 985237653725606605766874898999-999981013575----11-8--999999999999999999999999706
Q ss_pred C
Q ss_conf 3
Q gi|254780172|r 382 K 382 (386)
Q Consensus 382 ~ 382 (386)
T Consensus 305 ~ 305 (309)
T COG4209 305 N 305 (309)
T ss_pred C
T ss_conf 2