HHsearch alignment for GI: 254780172 and conserved domain: TIGR01097

>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. These proteins represent a family of phosphonate uptake transporters., probably responsible for the transport of phosphonate across the inner membrane. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0005887 integral to plasma membrane.
Probab=98.47  E-value=1.7e-05  Score=51.93  Aligned_cols=175  Identities=21%  Similarity=0.372  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             78779999999999987567754441278---6889997898888761472289--999999976641558877387999
Q gi|254780172|r  177 LLVTLVISFFGIIISMPLGILLALGRNSN---IPVLRYACITFIELFRGVPLVT--VLFMASIMLPLFLPDTWDVDKLLR  251 (386)
Q Consensus       177 l~~Tl~l~~~~~~~~~~lG~llal~r~s~---~~~l~~~~~~~ie~~Rg~Pli~--~lf~~~~~lp~~lp~g~~~~~~~~  251 (386)
T Consensus         5 M~~T~~IA~~~T~~~V~l~~~l~ll~A~NL~Pn~W~~~~VRRLM~~~RA~~E~V~A~lF~~~~~L----------GP-~~   73 (192)
T TIGR01097         5 MLVTLNIAVFSTILAVVLSIILGLLAAKNLVPNPWVRQIVRRLMDILRAINEVVIAGLFLVILSL----------GP-IA   73 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CC-HH
T ss_conf             99999999999999999999999986752588842104789999999776799999999999950----------51-89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHH----HHHHHHHHHHHH
Q ss_conf             9999999989998999999998458667899999621689999999969989986200479999----999612899999
Q gi|254780172|r  252 ALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFI----GLFKDSSLISII  327 (386)
Q Consensus       252 a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i----~l~KdTsL~~~I  327 (386)
T Consensus        74 ~~~A~~IHT~G~L~KLl~E~VE~~~~~P~EG~RA~GAN~~E~~~yG~~PQVl----P~l~SY~L~RlE~NVR~~T~~G~V  149 (192)
T TIGR01097        74 AVLALFIHTIGVLSKLLFEVVEAIDMKPVEGLRAVGANKLERVLYGVLPQVL----PLLISYFLLRLEINVRAATVVGAV  149 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHH----HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999899999999986158989766523330378899960102676----889999999998865555653044


Q ss_pred             HH---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99---99999999974101003551369999999999999999999999999
Q gi|254780172|r  328 NM---FDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFI  376 (386)
Q Consensus       328 g~---~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~l  376 (386)
T Consensus       150 G~GGIG~~L~~~---I~~------~~~~~T~A~~-~L~~~T~~~~D~lS~~L  191 (192)
T TIGR01097       150 GAGGIGVLLRLA---IRQ------FQEAKTLALV-LLLIVTVFLLDFLSARL  191 (192)
T ss_pred             CCCCHHHHHHHH---HHC------CHHHHHHHHH-HHHHHHHHHHHHHHHHC
T ss_conf             787276899998---603------3068899999-99999999999987740