HHsearch alignment for GI: 254780172 and conserved domain: TIGR01097
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. These proteins represent a family of phosphonate uptake transporters., probably responsible for the transport of phosphonate across the inner membrane. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0005887 integral to plasma membrane.
Probab=98.47 E-value=1.7e-05 Score=51.93 Aligned_cols=175 Identities=21% Similarity=0.372 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 78779999999999987567754441278---6889997898888761472289--999999976641558877387999
Q gi|254780172|r 177 LLVTLVISFFGIIISMPLGILLALGRNSN---IPVLRYACITFIELFRGVPLVT--VLFMASIMLPLFLPDTWDVDKLLR 251 (386)
Q Consensus 177 l~~Tl~l~~~~~~~~~~lG~llal~r~s~---~~~l~~~~~~~ie~~Rg~Pli~--~lf~~~~~lp~~lp~g~~~~~~~~ 251 (386)
T Consensus 5 M~~T~~IA~~~T~~~V~l~~~l~ll~A~NL~Pn~W~~~~VRRLM~~~RA~~E~V~A~lF~~~~~L----------GP-~~ 73 (192)
T TIGR01097 5 MLVTLNIAVFSTILAVVLSIILGLLAAKNLVPNPWVRQIVRRLMDILRAINEVVIAGLFLVILSL----------GP-IA 73 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CC-HH
T ss_conf 99999999999999999999999986752588842104789999999776799999999999950----------51-89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHH----HHHHHHHHHHHH
Q ss_conf 9999999989998999999998458667899999621689999999969989986200479999----999612899999
Q gi|254780172|r 252 ALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFI----GLFKDSSLISII 327 (386)
Q Consensus 252 a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i----~l~KdTsL~~~I 327 (386)
T Consensus 74 ~~~A~~IHT~G~L~KLl~E~VE~~~~~P~EG~RA~GAN~~E~~~yG~~PQVl----P~l~SY~L~RlE~NVR~~T~~G~V 149 (192)
T TIGR01097 74 AVLALFIHTIGVLSKLLFEVVEAIDMKPVEGLRAVGANKLERVLYGVLPQVL----PLLISYFLLRLEINVRAATVVGAV 149 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHH----HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999899999999986158989766523330378899960102676----889999999998865555653044
Q ss_pred HH---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99---99999999974101003551369999999999999999999999999
Q gi|254780172|r 328 NM---FDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFI 376 (386)
Q Consensus 328 g~---~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~l 376 (386)
T Consensus 150 G~GGIG~~L~~~---I~~------~~~~~T~A~~-~L~~~T~~~~D~lS~~L 191 (192)
T TIGR01097 150 GAGGIGVLLRLA---IRQ------FQEAKTLALV-LLLIVTVFLLDFLSARL 191 (192)
T ss_pred CCCCHHHHHHHH---HHC------CHHHHHHHHH-HHHHHHHHHHHHHHHHC
T ss_conf 787276899998---603------3068899999-99999999999987740