Query gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 386
No_of_seqs 227 out of 3276
Neff 6.0
Searched_HMMs 39220
Date Mon May 23 05:28:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780172.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0765 HisM ABC-type amino ac 100.0 0 0 431.9 25.1 206 171-384 16-222 (222)
2 PRK11123 arginine transporter 100.0 0 0 420.7 27.0 209 173-386 7-236 (238)
3 PRK09494 glnP glutamine ABC tr 100.0 0 0 415.1 25.7 204 172-381 14-217 (219)
4 PRK11122 artM arginine transpo 100.0 0 0 408.5 25.2 208 172-386 7-221 (222)
5 TIGR03003 ectoine_ehuD ectoine 100.0 0 0 379.5 15.0 201 172-380 18-218 (218)
6 TIGR03004 ectoine_ehuC ectoine 100.0 0 0 358.4 22.2 207 173-385 7-213 (216)
7 COG4160 ArtM ABC-type arginine 100.0 0 0 355.1 14.1 210 172-386 12-228 (228)
8 COG4215 ArtQ ABC-type arginine 100.0 0 0 337.4 22.0 210 172-386 9-229 (230)
9 COG4597 BatB ABC-type amino ac 100.0 1.9E-43 0 279.7 12.7 208 173-385 89-397 (397)
10 PRK10782 DL-methionine transpo 100.0 5.8E-41 1.4E-45 264.7 23.4 201 173-382 13-216 (217)
11 TIGR01726 HEQRo_perm_3TM amino 99.9 8.5E-28 2.2E-32 185.7 10.1 97 171-270 3-99 (99)
12 COG2011 AbcD ABC-type metal io 99.8 6.5E-17 1.6E-21 120.4 18.5 200 173-382 14-221 (222)
13 cd06261 TM_PBP2 Transmembrane 99.8 1.3E-16 3.3E-21 118.6 18.2 154 177-330 1-154 (190)
14 PRK11275 pstC phosphate transp 99.8 1.8E-15 4.7E-20 111.7 23.3 212 172-384 67-316 (319)
15 PRK11602 cysW sulfate/thiosulf 99.7 6.9E-16 1.7E-20 114.2 16.6 159 169-328 58-225 (291)
16 TIGR03226 PhnU 2-aminoethylpho 99.7 1.6E-14 4.2E-19 106.0 20.6 220 160-383 72-311 (312)
17 pfam00528 BPD_transp_1 Binding 99.7 6.6E-15 1.7E-19 108.3 18.3 179 191-386 1-183 (183)
18 PRK10971 sulfate/thiosulfate t 99.7 2.4E-14 6E-19 105.0 20.9 226 151-383 29-273 (277)
19 PRK09421 modB molybdate ABC tr 99.7 5.9E-14 1.5E-18 102.6 21.4 210 170-383 4-226 (229)
20 PRK10160 taurine transporter s 99.7 2.3E-13 5.7E-18 99.1 22.0 200 169-384 72-271 (275)
21 COG0573 PstC ABC-type phosphat 99.6 5.8E-13 1.5E-17 96.7 22.7 213 171-383 72-309 (310)
22 COG3639 ABC-type phosphate/pho 99.6 1.3E-12 3.3E-17 94.6 23.4 258 106-381 19-282 (283)
23 PRK11365 ssuC alkanesulfonate 99.6 2.6E-13 6.5E-18 98.8 18.3 197 170-382 55-251 (263)
24 PRK09500 potC spermidine/putre 99.6 6.2E-13 1.6E-17 96.5 19.1 202 170-380 53-255 (257)
25 TIGR02138 phosphate_pstC phosp 99.6 1.5E-12 3.9E-17 94.1 21.1 209 173-381 66-317 (317)
26 COG0581 PstA ABC-type phosphat 99.6 2.7E-11 7E-16 86.6 27.3 150 177-329 73-225 (292)
27 PRK10592 putrescine transporte 99.6 5.3E-13 1.4E-17 96.9 17.9 208 170-382 58-269 (281)
28 PRK09433 thiP thiamine transpo 99.6 1.2E-11 3E-16 88.9 24.3 213 166-384 320-536 (536)
29 PRK09497 potB spermidine/putre 99.6 1.7E-13 4.4E-18 99.8 13.1 211 170-383 58-281 (285)
30 COG1178 ThiP ABC-type Fe3+ tra 99.5 5.3E-12 1.3E-16 90.9 20.5 208 169-383 327-538 (540)
31 PRK11268 pstA phosphate transp 99.5 7.2E-12 1.8E-16 90.1 20.6 197 176-379 82-292 (292)
32 TIGR03416 ABC_choXWV_perm chol 99.5 1.9E-11 4.8E-16 87.6 22.6 152 171-332 82-233 (267)
33 TIGR03255 PhnV 2-aminoethylpho 99.5 5E-12 1.3E-16 91.0 19.2 204 172-382 65-272 (272)
34 PRK10952 glycine betaine trans 99.5 5E-11 1.3E-15 85.0 23.0 237 115-386 101-338 (354)
35 COG1174 OpuBB ABC-type proline 99.5 2.1E-11 5.4E-16 87.3 20.9 187 173-383 28-217 (221)
36 PRK09433 thiP thiamine transpo 99.5 3.3E-11 8.5E-16 86.1 21.8 207 169-383 48-271 (536)
37 TIGR03262 PhnU2 putative 2-ami 99.5 2.7E-11 6.9E-16 86.7 19.0 208 169-383 326-539 (546)
38 COG0600 TauC ABC-type nitrate/ 99.5 9.9E-11 2.5E-15 83.3 21.1 193 172-384 58-254 (258)
39 COG1178 ThiP ABC-type Fe3+ tra 99.4 6E-11 1.5E-15 84.6 18.9 202 168-378 49-265 (540)
40 TIGR03262 PhnU2 putative 2-ami 99.4 2.6E-10 6.7E-15 80.8 21.5 154 170-328 49-212 (546)
41 COG1177 PotC ABC-type spermidi 99.4 8E-11 2E-15 83.8 18.8 200 171-379 61-261 (267)
42 COG1175 UgpA ABC-type sugar tr 99.4 1.2E-10 3.1E-15 82.8 19.4 209 170-384 63-294 (295)
43 TIGR00974 3a0107s02c phosphate 99.4 2.5E-12 6.3E-17 92.9 9.7 204 175-382 57-302 (302)
44 PRK10683 putrescine transporte 99.4 8.5E-11 2.2E-15 83.7 17.5 206 170-379 92-311 (317)
45 PRK10561 glycerol-3-phosphate 99.4 3.9E-10 1E-14 79.7 18.8 203 170-380 50-277 (280)
46 CHL00187 cysT sulfate transpor 99.3 8.6E-11 2.2E-15 83.7 14.9 171 151-333 24-208 (235)
47 COG0555 CysU ABC-type sulfate 99.3 2E-11 5.2E-16 87.4 11.4 220 148-384 25-273 (274)
48 PRK10913 dipeptide transporter 99.3 3E-10 7.6E-15 80.4 16.5 205 171-386 92-300 (300)
49 COG1173 DppC ABC-type dipeptid 99.3 9.4E-10 2.4E-14 77.4 18.1 203 167-385 75-287 (289)
50 PRK09881 ATP-dependent peptide 99.3 9.1E-09 2.3E-13 71.5 22.5 204 171-385 87-294 (296)
51 PRK10999 malF maltose transpor 99.3 1.1E-09 2.9E-14 76.9 16.9 200 173-378 283-516 (520)
52 PRK10417 nikC nickel transport 99.2 2E-09 5.2E-14 75.4 16.4 197 171-384 60-266 (272)
53 COG4176 ProW ABC-type proline/ 99.2 3.1E-09 8E-14 74.3 15.7 231 116-386 51-286 (290)
54 PRK10352 nickel transporter pe 99.1 6.2E-09 1.6E-13 72.5 15.5 223 160-385 76-311 (314)
55 COG0601 DppB ABC-type dipeptid 99.1 3.8E-08 9.7E-13 67.8 18.2 220 160-383 73-316 (317)
56 PRK09471 oppB oligopeptide tra 99.0 4.3E-08 1.1E-12 67.4 15.5 218 160-380 71-304 (306)
57 COG4149 ModC ABC-type molybdat 99.0 1.2E-08 3.1E-13 70.7 12.5 138 170-310 2-151 (225)
58 PRK10914 dipeptide transporter 99.0 3.4E-07 8.7E-12 62.1 18.2 219 160-382 74-337 (339)
59 TIGR01581 Mo_ABC_porter NifC-l 98.8 3.9E-07 1E-11 61.7 14.7 175 171-357 17-200 (226)
60 PRK10998 malG maltose transpor 98.8 2.7E-06 7E-11 56.6 18.9 146 173-321 81-230 (296)
61 COG1176 PotB ABC-type spermidi 98.8 2E-06 5.2E-11 57.4 16.8 146 172-318 63-222 (287)
62 TIGR02141 modB_ABC molybdate A 98.8 4.7E-07 1.2E-11 61.2 13.2 184 178-379 1-212 (212)
63 PRK10973 glycerol-3-phosphate 98.7 6.9E-06 1.8E-10 54.2 18.0 144 171-321 71-215 (281)
64 COG0395 UgpE ABC-type sugar tr 98.7 2.5E-05 6.3E-10 50.9 19.9 136 172-317 70-207 (281)
65 COG4209 LplB ABC-type polysacc 98.6 2.1E-05 5.4E-10 51.3 16.8 198 173-382 77-305 (309)
66 COG3833 MalG ABC-type maltose 98.5 7.3E-05 1.9E-09 48.1 18.3 154 170-328 68-222 (282)
67 TIGR01097 3A0109s02M phosphona 98.5 1.7E-05 4.2E-10 51.9 14.5 175 177-376 5-191 (192)
68 COG4239 ABC-type uncharacteriz 98.2 0.00052 1.3E-08 43.0 17.6 168 176-368 147-327 (341)
69 TIGR02139 permease_CysT sulfat 98.1 3.1E-06 8E-11 56.3 4.7 216 148-382 18-264 (265)
70 TIGR00969 3a0106s02 sulfate AB 97.9 1.6E-06 4E-11 58.1 -1.2 157 149-310 38-212 (280)
71 COG4590 ABC-type uncharacteriz 97.6 0.0005 1.3E-08 43.1 8.2 119 263-382 598-728 (733)
72 COG4132 ABC-type uncharacteriz 97.6 0.0058 1.5E-07 36.7 18.5 193 175-379 56-276 (282)
73 COG4208 CysW ABC-type sulfate 97.5 4.2E-05 1.1E-09 49.5 1.6 136 167-302 57-200 (287)
74 TIGR02789 nickel_nikB nickel A 97.5 0.005 1.3E-07 37.1 12.0 219 162-386 78-315 (315)
75 COG4986 ABC-type anion transpo 97.4 0.0064 1.6E-07 36.4 11.6 122 181-316 327-452 (523)
76 TIGR02140 permease_CysW sulfat 97.3 7.8E-05 2E-09 47.9 1.5 135 169-305 41-198 (275)
77 COG4662 TupA ABC-type tungstat 97.3 0.012 3.2E-07 34.7 17.0 200 168-378 16-226 (227)
78 TIGR01253 thiP thiamine/thiami 97.2 0.014 3.7E-07 34.3 18.5 205 170-384 42-265 (519)
79 COG4986 ABC-type anion transpo 97.0 0.025 6.4E-07 32.8 16.7 121 179-307 13-138 (523)
80 TIGR02790 nickel_nikC nickel A 97.0 0.011 2.8E-07 35.0 9.5 176 176-367 60-246 (258)
81 COG4168 SapB ABC-type antimicr 96.3 0.074 1.9E-06 30.0 15.5 186 137-322 29-257 (321)
82 COG4135 ABC-type uncharacteriz 94.8 0.28 7.2E-06 26.5 16.6 65 248-312 414-478 (551)
83 pfam03649 UPF0014 Uncharacteri 93.8 0.45 1.2E-05 25.3 19.5 77 248-333 128-204 (250)
84 TIGR01183 ntrB nitrate ABC tra 92.2 0.8 2E-05 23.8 11.3 145 207-366 48-192 (203)
85 TIGR02974 phageshock_pspF psp 86.3 1.1 2.8E-05 23.0 3.9 38 256-293 305-342 (349)
86 COG4171 SapC ABC-type antimicr 74.6 5.8 0.00015 18.7 12.0 131 181-336 103-235 (296)
87 pfam02954 HTH_8 Bacterial regu 72.8 5.3 0.00014 18.9 3.8 33 265-297 7-39 (42)
88 TIGR02921 PEP_integral PEP-CTE 57.1 13 0.00033 16.5 8.9 190 144-370 21-224 (952)
89 pfam10265 DUF2217 Uncharacteri 52.9 5.6 0.00014 18.8 0.8 56 287-344 373-436 (515)
90 KOG3831 consensus 51.5 7.8 0.0002 17.9 1.4 33 92-124 92-130 (196)
91 TIGR01817 nifA Nif-specific re 44.5 18 0.00046 15.7 2.3 20 278-297 545-564 (574)
92 TIGR00840 b_cpa1 sodium/hydrog 42.8 22 0.00056 15.2 6.1 156 167-381 199-363 (627)
93 PRK10365 transcriptional regul 42.3 23 0.00057 15.1 3.7 35 263-297 405-439 (441)
94 PRK11608 pspF phage shock prot 40.8 24 0.00061 15.0 3.8 37 261-297 284-320 (325)
95 TIGR00776 RhaT RhaT L-rhamnose 39.5 25 0.00063 14.9 5.7 63 247-319 163-228 (336)
96 PRK11638 lipopolysaccharide bi 36.8 24 0.00061 15.0 2.0 26 36-61 22-47 (348)
97 PRK11388 DNA-binding transcrip 36.6 28 0.00071 14.6 3.8 33 265-297 593-625 (639)
98 PRK10923 glnG nitrogen regulat 34.3 30 0.00077 14.4 3.8 37 261-297 427-463 (469)
99 PRK11361 acetoacetate metaboli 26.6 41 0.001 13.6 3.8 36 262-297 416-451 (457)
100 TIGR01258 pgm_1 phosphoglycera 26.6 9.4 0.00024 17.4 -1.5 20 27-46 9-28 (248)
101 pfam08209 Sgf11 Sgf11 (transcr 25.1 44 0.0011 13.4 2.1 20 367-386 80-99 (99)
102 TIGR02606 antidote_CC2985 puta 24.8 24 0.00061 15.0 0.3 35 243-279 7-41 (77)
103 PRK08381 putative monovalent c 24.3 45 0.0012 13.3 4.0 28 353-380 59-87 (87)
104 TIGR02885 spore_sigF RNA polym 23.8 37 0.00096 13.8 1.2 20 276-295 199-218 (231)
105 pfam03342 Rhabdo_M1 Rhabdoviru 22.2 50 0.0013 13.1 3.2 34 274-308 146-179 (219)
106 TIGR00492 alr alanine racemase 22.0 25 0.00063 14.9 -0.1 18 98-115 224-241 (383)
107 TIGR02968 succ_dehyd_anc succi 21.3 52 0.0013 13.0 2.7 13 172-184 38-50 (105)
108 pfam06850 PHB_depo_C PHB de-po 21.3 52 0.0013 12.9 2.2 29 269-297 141-172 (203)
109 pfam07436 Curto_V3 Curtovirus 21.0 14 0.00035 16.5 -1.6 18 268-285 70-87 (87)
110 pfam12072 DUF3552 Domain of un 21.0 53 0.0013 12.9 2.4 22 180-201 2-23 (201)
111 pfam04123 DUF373 Domain of unk 20.1 55 0.0014 12.8 4.6 82 113-197 154-245 (344)
No 1
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=431.94 Aligned_cols=206 Identities=37% Similarity=0.674 Sum_probs=198.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHCCCCCCCCHH
Q ss_conf 11002478779999999999987567754441278688999789888876147228999999997-66415588773879
Q gi|254780172|r 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIM-LPLFLPDTWDVDKL 249 (386)
Q Consensus 171 t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~-lp~~lp~g~~~~~~ 249 (386)
...++|+.+|+.+++.++++|+++|+++|++|.|+.+++|+++..|+|++||||+++|+|+.||+ +|.+ |.++|++
T Consensus 16 ~~ll~G~~~Tl~ls~~~~~~g~vlG~~la~~r~s~~~~l~~~~~~Yv~~~RgtPlLvqlf~~yfg~lp~~---gi~~~~~ 92 (222)
T COG0765 16 PFLLKGLLVTLLLTLLSIVLGLVLGLLLALMRLSGNKPLRWLARAYVEIFRGTPLLVQLFFIYFGLLPLL---GIELDPF 92 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---CCCCCHH
T ss_conf 9999999999999999999999999999999977847899999998877617419999999999857984---4677799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998999899999999845866789999962168999999996998998620047999999961289999999
Q gi|254780172|r 250 LRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329 (386)
Q Consensus 250 ~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~ 329 (386)
.++++++++|+|||+||++|||++||||||+|||+|+|||++|+||+||+|||+|+++||++||+|+++||||++++||+
T Consensus 93 ~aavial~l~~~AY~aEi~R~GI~sV~kGQ~EAA~aLGls~~q~~r~IIlPQAlr~~lP~l~n~~i~liK~TSl~svIgv 172 (222)
T COG0765 93 TAAVIALSLNSGAYLAEIVRAGIQSVPKGQWEAARALGLTYWQTMRYVILPQALRVILPPLGNQFISLIKDTSLVSVIGV 172 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999618886899999859998668663002356998651768999999998299999989
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999997410100355136999999999999999999999999999843378
Q gi|254780172|r 330 FDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGS 384 (386)
Q Consensus 330 ~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~ 384 (386)
.|+++++|.+.+++ ++++|.|++++++||++|+++|+.++++|||+++.+
T Consensus 173 ~EL~~~a~~i~~~t-----~~~~e~~~~~a~iY~~l~~~ls~~~~~lErr~~~~~ 222 (222)
T COG0765 173 VELTRAAQIIAART-----FRPFEVYLLAALIYLILCLPLSLLSRRLERRLARYG 222 (222)
T ss_pred HHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999866-----517999999999999999999999999998852379
No 2
>PRK11123 arginine transporter permease subunit ArtQ; Provisional
Probab=100.00 E-value=0 Score=420.70 Aligned_cols=209 Identities=22% Similarity=0.406 Sum_probs=199.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC------------
Q ss_conf 00247877999999999998756775444127868899978988887614722899999999766415------------
Q gi|254780172|r 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFL------------ 240 (386)
Q Consensus 173 ~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~l------------ 240 (386)
+..|+.+|+.+++.++++|+++|+++|++|.|+.+++|+++..|+|++||+|+++++|+.||++|.++
T Consensus 7 Ll~G~~~Tl~l~~~a~~~g~~lG~~la~~r~s~~~~l~~~~~~yv~~~RgtP~lv~l~~~yfg~p~l~~~l~~~~~~~~~ 86 (238)
T PRK11123 7 LASAAGMTVGLAVCALIVGLALAMFFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGSSQLLLTLSDGFTLNLG 86 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999999999999999999999988868899999999999916759999999999528988763100000100
Q ss_pred --------C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf --------5-8877387999999999998999899999999845866789999962168999999996998998620047
Q gi|254780172|r 241 --------P-DTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIV 311 (386)
Q Consensus 241 --------p-~g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~ 311 (386)
+ .+.+++++++++++++++++||+||++|||++||||||+|||+|+|||++|++|+||+|||+|+++|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~f~~avial~l~~~Ay~aEi~R~gi~sVp~GQ~EAa~alGms~~q~~r~IilPQa~r~~lP~l~ 166 (238)
T PRK11123 87 FVQIPVQMDIENFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLG 166 (238)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11101001213456469999999999999999999999999839999999999849899999999998999999973899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999961289999999999999999741010035513699999999999999999999999999984337899
Q gi|254780172|r 312 NTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGSKK 386 (386)
Q Consensus 312 n~~i~l~KdTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~rR 386 (386)
|++|.++|||||+++||+.|+++++|.+.+++ +.++|.|+.++++|+++|+++++..+++|||++|.+||
T Consensus 167 n~~i~liK~TSL~s~Igv~El~~~a~~i~~~t-----~~~~e~y~~~a~iYlii~~~l~~~~~~lEkR~~r~~rr 236 (238)
T PRK11123 167 NQWLVLLKDTALVSLISVNDLMLQTKSIATRT-----QEPFTWYIIAAAIYLVITLISQYILKRIDLRFTRFERR 236 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999849999998999999999999713-----45699999999999999999999999999985422578
No 3
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed
Probab=100.00 E-value=0 Score=415.09 Aligned_cols=204 Identities=27% Similarity=0.413 Sum_probs=197.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 10024787799999999999875677544412786889997898888761472289999999976641558877387999
Q gi|254780172|r 172 SLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLR 251 (386)
Q Consensus 172 ~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~~ 251 (386)
.+++|+..|+.+++.++++|+++|+++|.+|.|+.|++|+++..|+|++||+|+++++|+.||++|..+ .|+++|++++
T Consensus 14 ~ll~Gl~~Tl~l~~~s~~~g~~lG~~~a~~r~~~~~~l~~~~~~yv~~~RgtPlLv~lf~~yfglp~l~-~~i~~~~~~~ 92 (219)
T PRK09494 14 LLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPMAF-NDLRIDPFSA 92 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-CCCCCCHHHH
T ss_conf 999999999999999999999999999999988968999999999999976489999999999899854-6777489999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999899989999999984586678999996216899999999699899862004799999996128999999999
Q gi|254780172|r 252 ALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFD 331 (386)
Q Consensus 252 a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~e 331 (386)
++++++++++||+||++|||++||||||+|||+|+|||++|++|+|++|||+|+++|+++|++|.++||||++++||+.|
T Consensus 93 ~vi~l~l~~~Ay~aEi~R~gi~sVp~GQ~EAA~alG~s~~q~~r~IilPQa~r~~lP~l~n~~i~liK~Tsl~s~Igv~E 172 (219)
T PRK09494 93 AVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIGVAE 172 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999998318799999885989888989646998799988788999999999879999998999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999997410100355136999999999999999999999999999843
Q gi|254780172|r 332 LLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLH 381 (386)
Q Consensus 332 l~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~ 381 (386)
+++++|.+.+++ +.++|.|+.++++||++|+++++.++++|||++
T Consensus 173 l~~~a~~i~~~t-----~~~~e~~~~~a~iY~~l~~~l~~~~~~lErrl~ 217 (219)
T PRK09494 173 LTRQGQEIIAGN-----FRALEIWSAVAVIYLIITLVLSFILRRLERRMK 217 (219)
T ss_pred HHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999710-----718999999999999999999999999998771
No 4
>PRK11122 artM arginine transporter permease subunit ArtM; Provisional
Probab=100.00 E-value=0 Score=408.50 Aligned_cols=208 Identities=22% Similarity=0.415 Sum_probs=195.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-----CCC--CC
Q ss_conf 10024787799999999999875677544412786889997898888761472289999999976641-----558--87
Q gi|254780172|r 172 SLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLF-----LPD--TW 244 (386)
Q Consensus 172 ~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~-----lp~--g~ 244 (386)
.+.+|+..|+.+++.++++|+++|+++|++|.|+.|++|+++..|+|++||+|+++++|+.||+.|.+ .|. +.
T Consensus 7 ~ll~G~~~Tl~l~~~s~~~~~~lG~~la~~r~~~~~~l~~~~~~yv~~~Rg~PlLv~lf~~yfg~~~~~~l~~~~~~~~~ 86 (222)
T PRK11122 7 ELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFPWLQEYPWLWHL 86 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999999999999999999999999998797789999999999995646999999999814888777503035320
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 73879999999999989998999999998458667899999621689999999969989986200479999999612899
Q gi|254780172|r 245 DVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLI 324 (386)
Q Consensus 245 ~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~ 324 (386)
..|++++++++++++++||+||++|||++||||||+|||+|+|||++|++| ||+|||+|.++|+++|++|+++|||||+
T Consensus 87 ~~~~~~~~viaL~l~~~Ay~aEi~R~gi~sV~~GQ~EAA~slGls~~q~~r-IilPQa~r~~lP~l~n~~i~liK~TsL~ 165 (222)
T PRK11122 87 LSQPWLCAMLALALNSAAYSTQLFYGAIRAIPEGQWQSCSALGMSKKQTLA-ILLPYAFKRALSSYSNEVVLVFKGTSLA 165 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 225999999999999999999999999960998799999986989999999-8999999998668899999999984999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999741010035513699999999999999999999999999984337899
Q gi|254780172|r 325 SIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGSKK 386 (386)
Q Consensus 325 ~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~rR 386 (386)
++||+.|+++++|.+.+++ +. .+.|..++++||++|+++++.++++|||+.+.+||
T Consensus 166 s~Igv~El~~~a~~i~~~t-----~~-~~~y~~~a~~Y~~i~~~~~~~~~~lErR~~~~~rr 221 (222)
T PRK11122 166 YTITLMDVMGYSQLLYGRT-----YD-VMVFGAAGIIYLVVNGLLTLLMRLIERKALAFERR 221 (222)
T ss_pred HHHHHHHHHHHHHHHHHCC-----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9998999999999999741-----60-99999999999999999999999999987655335
No 5
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD; InterPro: IPR014341 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this entry are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain other genes of the ABC transporter and are typically found next to either ectoine utilization or ectoine biosynthesis operons..
Probab=100.00 E-value=0 Score=379.52 Aligned_cols=201 Identities=28% Similarity=0.511 Sum_probs=195.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 10024787799999999999875677544412786889997898888761472289999999976641558877387999
Q gi|254780172|r 172 SLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLR 251 (386)
Q Consensus 172 ~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~~ 251 (386)
.+..|+..|+..+..|.+.+.++|+++|++|+|+...++|+...-|||+|+|||++|+||.||+||-+ |+.++.+..
T Consensus 18 ~l~~gl~~Ti~atalGfaiA~VlGLvfAilRrsa~~~Iswp~~~vvEFiR~TPLLvQlyFlyYVLP~~---Gi~LpA~~~ 94 (218)
T TIGR03003 18 ELLEGLKVTIKATALGFAIALVLGLVFAILRRSARKLISWPTAVVVEFIRDTPLLVQLYFLYYVLPDY---GISLPALLV 94 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHEEEEEEECCCCHHHHHHHHHHHHHCC---CCCHHHHHH
T ss_conf 99999999999999999999999999988752156310100100465205680899999999883023---331379999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999899989999999984586678999996216899999999699899862004799999996128999999999
Q gi|254780172|r 252 ALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFD 331 (386)
Q Consensus 252 a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~e 331 (386)
+++|+++++|+|.|||.|||+++|||||||||+|++||+.|++|+||+|||+|.++|+++|..|.++|||++.|+|.+.|
T Consensus 95 GvlglGlhYa~Y~aEVYR~G~eaVprGQWEAa~AlNlt~~~tyr~iIlPQAippi~Pa~gNYLvAM~KeTPvLSaiTVlE 174 (218)
T TIGR03003 95 GVLGLGLHYAAYAAEVYRAGLEAVPRGQWEAATALNLTARQTYRDIILPQAIPPIVPALGNYLVAMLKETPVLSAITVLE 174 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 89998888998888888631025887616899985233544576510222100110045789999973274468899999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999741010035513699999999999999999999999999984
Q gi|254780172|r 332 LLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTL 380 (386)
Q Consensus 332 l~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl 380 (386)
+|+++|++.+++ |+++|+...++++|++++...+..-||+|+|+
T Consensus 175 ~M~~Ak~Ig~~t-----frYleP~TlVGvfFL~lsii~~~~lrrlearl 218 (218)
T TIGR03003 175 LMNQAKSIGEET-----FRYLEPLTLVGVFFLLLSIILAFLLRRLEARL 218 (218)
T ss_pred HHHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999888886246-----51044078999999999999999999998619
No 6
>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC; InterPro: IPR014342 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this entry are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain other genes of the ABC transporter and are typically found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologues..
Probab=100.00 E-value=0 Score=358.42 Aligned_cols=207 Identities=31% Similarity=0.498 Sum_probs=199.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 00247877999999999998756775444127868899978988887614722899999999766415588773879999
Q gi|254780172|r 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRA 252 (386)
Q Consensus 173 ~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~~a 252 (386)
.|.|-.+|+.++..+.+++.++....+++|.|+.+.+|++|..|||+||||-++|||||.||.||+ -|.|+++||...+
T Consensus 7 ~lQGAwVT~~iTl~gs~la~V~Af~aglgr~s~~~~lr~~a~~YiE~FRGTSllVQLFW~yfvLPl-PP~gl~l~P~t~g 85 (216)
T TIGR03004 7 LLQGAWVTLQITLAGSVLAVVVAFLAGLGRLSRFRILRALAVVYIEVFRGTSLLVQLFWLYFVLPL-PPIGLELDPLTVG 85 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHHH
T ss_conf 998899999999999999999999998875235358877777875442037899999999997257-9998402518999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998999899999999845866789999962168999999996998998620047999999961289999999999
Q gi|254780172|r 253 LLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDL 332 (386)
Q Consensus 253 ~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~el 332 (386)
+++|+++.+||=|||+||+++||.|+|+|||.||++++.|++|||+||||+..++|+.+|+.|.++|+||+||.|++.|+
T Consensus 86 v~~Lglh~GaYGAEivRGA~~sv~~~Q~EAc~ALNftrfq~~rrI~LPQAl~~mmp~fgNlaIElLK~tslVSLIslaDl 165 (216)
T TIGR03004 86 VLALGLHVGAYGAEIVRGAVKSVSKEQLEACIALNFTRFQALRRIVLPQALVEMMPAFGNLAIELLKLTSLVSLISLADL 165 (216)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999732650168888889974365899999841536779987632679997438661589999987899999999867
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999974101003551369999999999999999999999999998433789
Q gi|254780172|r 333 LGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGSK 385 (386)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~r 385 (386)
+.++|.+.++| .....+|-.+.++||+++..++...|++|||+.||+-
T Consensus 166 tF~Aq~~r~~T-----~~tl~~fa~~LL~YFvMa~~i~l~~R~lEr~v~RG~v 213 (216)
T TIGR03004 166 TFRAQSVRALT-----LDTLKVFALILLLYFVMALIISLAMRVLERRVARGRV 213 (216)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 69999999841-----0027999999999999999999999988666406787
No 7
>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=355.06 Aligned_cols=210 Identities=28% Similarity=0.456 Sum_probs=198.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC----CC---
Q ss_conf 10024787799999999999875677544412786889997898888761472289999999976641558----87---
Q gi|254780172|r 172 SLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPD----TW--- 244 (386)
Q Consensus 172 ~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~----g~--- 244 (386)
...+|+..|+.+.++++++|+.+.+.+|++|.|++|++++++..|+.+|||||+++|+|+.|+++..|-+. +.
T Consensus 12 ~~l~Gl~~TL~Ll~~S~~iG~~LAvpla~~r~s~~~~v~~~a~~y~~~fRGTPLLvQlfLiYyGlgqf~~ir~s~~lW~~ 91 (228)
T COG4160 12 RLLSGLATTLWLLIISLVIGFVLALPLALARVSKNRWVSWPARAYTYVFRGTPLLVQLFLIYYGLGQFEWIRESIFLWPF 91 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99731999999999999999999999999997288500111250145653874999999999464314688840665899
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 73879999999999989998999999998458667899999621689999999969989986200479999999612899
Q gi|254780172|r 245 DVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLI 324 (386)
Q Consensus 245 ~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~ 324 (386)
--|++.++++++++|++||.+|++||+++|||+||+|||+|+|||++|++|+|++|||+|+++|++.|+.|.++|.|||+
T Consensus 92 lr~~w~Ca~lAltLNtaAY~~Ei~rGAi~avP~Gq~Eaa~AlGmsr~~~~r~IiLP~Alr~ALp~YsNEvILmlK~Tala 171 (228)
T COG4160 92 LREAWFCAVLALTLNTAAYTTEIFRGAIRAVPRGQWEAARALGMSRFKTLRRIILPSALRRALPAYSNEVILMLKSTALA 171 (228)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHH
T ss_conf 82528899999999779999999988985289417899998196299999999977999984624588379998344154
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999741010035513699999999999999999999999999984337899
Q gi|254780172|r 325 SIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGSKK 386 (386)
Q Consensus 325 ~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~rR 386 (386)
++|.++|+|+.++.+.++| |.++|+|+.++++|.++++.+.+..+++|+|..+..||
T Consensus 172 ~tiTv~Dl~g~ar~i~~~T-----y~~~~~f~~ag~iYl~it~il~~~~r~~E~r~~~~~~~ 228 (228)
T COG4160 172 STITVMDLMGYARLINSRT-----YDPYEVFGIAGAIYLIITGILTLLFRLIERRWLAHLRR 228 (228)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 3413999999999999977-----68999999999999999999999999999987631269
No 8
>COG4215 ArtQ ABC-type arginine transport system, permease component [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=337.43 Aligned_cols=210 Identities=29% Similarity=0.511 Sum_probs=195.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC--------CC-
Q ss_conf 100247877999999999998756775444127868899978988887614722899999999766415--------58-
Q gi|254780172|r 172 SLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFL--------PD- 242 (386)
Q Consensus 172 ~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~l--------p~- 242 (386)
+...|..+|+.+++.+.++|+.+|++.|.++.|++|.+|++...|+.++||+|=++++++.||+....+ +.
T Consensus 9 ~l~~ga~~Tl~lAv~sl~lgl~lGl~~A~~kls~~r~lr~~~~~YtTv~RGvPELl~illiyfG~~~lL~~~~~~~~~~g 88 (230)
T COG4215 9 ELLQGALVTLELAVCSLILGLLLGLLGALGKLSKNRLLRLLGNVYTTVIRGVPELLLILLIYFGGQILLNTLADVTGALG 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999999999999986666067897543535542671999999999830999999998730147
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf --877387999999999998999899999999845866789999962168999999996998998620047999999961
Q gi|254780172|r 243 --TWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKD 320 (386)
Q Consensus 243 --g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~Kd 320 (386)
.+++|+|.++++++++..+||.+|++||++++|||||+|||+|+|||++|++|+|++||++|.++|+++|++..++||
T Consensus 89 ~~~idi~~FvaGviaL~~i~gAYatEt~RGA~~AVp~GQ~EAa~AlGms~~~~frrI~lPqm~R~ALPGlgN~WlvllKD 168 (230)
T COG4215 89 VGFIDISPFVAGVIALGLIFGAYATETLRGAFKAVPKGQIEAARALGLSRSQTFRRIVLPQMWRHALPGLGNLWLVLLKD 168 (230)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC
T ss_conf 77455674999999999999999899999999728965188999809987688999998889998278853026777630
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 289999999999999999741010035513699999999999999999999999999984337899
Q gi|254780172|r 321 SSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGSKK 386 (386)
Q Consensus 321 TsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~rR 386 (386)
|+|+|+||+.|++.++|.+...| .+++..|..++++|+.++...+..-+++|||.+||.+|
T Consensus 169 TALVSvIGl~dl~~~a~~aa~~T-----k~pFtfy~~aa~iYL~~t~vS~~~l~~lErr~~rg~~r 229 (230)
T COG4215 169 TALVSLIGLNDLMRQTQLAAGST-----KEPFTFYIVAALIYLVITLVSNVVLLFLERRASRGFER 229 (230)
T ss_pred CHHHHHHCHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 03542115999999999873455-----55439999999999999999999999999985424257
No 9
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-43 Score=279.65 Aligned_cols=208 Identities=27% Similarity=0.469 Sum_probs=185.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-------------
Q ss_conf 0024787799999999999875677544412786889997898888761472289999999976641-------------
Q gi|254780172|r 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLF------------- 239 (386)
Q Consensus 173 ~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~------------- 239 (386)
.+-|+..|+.+++.+++.+.++|++.+++|.|++..+|++|..|+|+|||+|++.++|+-|++.-.-
T Consensus 89 ~~VGllNTl~Va~~gIi~atIiGfliGIaRLS~NWLi~kl~~vYvEiFRNiPpLL~IfFWYf~Vl~~LP~ar~s~~l~~~ 168 (397)
T COG4597 89 FIVGLLNTLLVAALGIITATIIGFLIGIARLSDNWLIRKLSTVYVEIFRNIPPLLQIFFWYFGVLSVLPGARQSVSLPDL 168 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 89988989999999999999999998777723138999998999999826857999999999999528870001115630
Q ss_pred ---------CCC--------------------------------------------------------------------
Q ss_conf ---------558--------------------------------------------------------------------
Q gi|254780172|r 240 ---------LPD-------------------------------------------------------------------- 242 (386)
Q Consensus 240 ---------lp~-------------------------------------------------------------------- 242 (386)
+|.
T Consensus 169 ~~L~nrG~~~p~P~~geG~~~~~lA~~~~I~~s~~~~r~ak~rQ~~TGq~~~~~~~~~~LiiglPll~~~~~G~pl~~d~ 248 (397)
T COG4597 169 IFLSNRGLYFPSPQWGEGFIAFILALVMAIVASVFLARWAKTRQIATGQQFRTWPTAAVLIIGLPLLAQWLFGAPLTFDV 248 (397)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCEECC
T ss_conf 13525640147731036517999999999999999999988778750785762356889984508899997289721205
Q ss_pred ----------CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf ----------87-7387999999999998999899999999845866789999962168999999996998998620047
Q gi|254780172|r 243 ----------TW-DVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIV 311 (386)
Q Consensus 243 ----------g~-~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~ 311 (386)
|. -.+.+.+-.++++++++|++||++|+|+++|+|||+|||+|+|+++.+++|.||.|||+|++|||++
T Consensus 249 P~~~~FNl~GG~~v~PEf~aL~laLs~YTaaFIAEiVRaGI~~VskGQtEAa~sLGL~~~~t~RlVivPQAlRiIIPPLT 328 (397)
T COG4597 249 PALGGFNLTGGMVVIPEFAALFLALSFYTAAFIAEIVRAGIQAVSKGQTEAARSLGLRSSLTLRLVIVPQALRIIIPPLT 328 (397)
T ss_pred CCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCEEECCCCC
T ss_conf 21144356687056578999999999999999999998765025766177898628997544799984110156417621
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999996128999999999999999974101003551369999999999999999999999999998433789
Q gi|254780172|r 312 NTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGSK 385 (386)
Q Consensus 312 n~~i~l~KdTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~r 385 (386)
+|+.++.|++||+..||.+|+...+.++.+|| .+.+|......++|+.++...|.++++..+|++--+|
T Consensus 329 SQYLNLtKNSSLAiAIGYpDlv~vagT~lNQT-----GQAvEvv~i~m~vYL~lSL~tSl~MN~~N~rmalvER 397 (397)
T COG4597 329 SQYLNLTKNSSLAIAIGYPDLVAVAGTVLNQT-----GQAVEVVAIWMLVYLSLSLTTSLLMNWYNRRMALVER 397 (397)
T ss_pred HHHHHHCCCCHHHHCCCCCCEEEEECEEECCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88873323542320027776688733022455-----6078999999999999999999999998765432049
No 10
>PRK10782 DL-methionine transporter permease subunit; Provisional
Probab=100.00 E-value=5.8e-41 Score=264.70 Aligned_cols=201 Identities=21% Similarity=0.328 Sum_probs=164.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 002478779999999999987567754441---27868899978988887614722899999999766415588773879
Q gi|254780172|r 173 LWGGLLVTLVISFFGIIISMPLGILLALGR---NSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKL 249 (386)
Q Consensus 173 ~~gGl~~Tl~l~~~~~~~~~~lG~llal~r---~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~ 249 (386)
.|.-+.+|+..+++++++|+|+|+++++.| .++++.+++++..|+|++|++|.++++++.+...+.+. |..++ +
T Consensus 13 ~~~Tl~mt~~s~~~~~iiglplGi~l~~~~~~~~~~~~~l~~~~~~~i~~~R~iP~lv~l~~~~~~~~~~~--g~~~g-~ 89 (217)
T PRK10782 13 VWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSAVVNIFRSIPFIILLVWMIPFTRVIV--GTSIG-L 89 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCC-H
T ss_conf 99999999999999999999999999973202244346899999999999950689999999999999984--46621-6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998999899999999845866789999962168999999996998998620047999999961289999999
Q gi|254780172|r 250 LRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329 (386)
Q Consensus 250 ~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~ 329 (386)
.++++++++++++|++|++|+|+++||+||+|||+|+|+|++|++++|++|||++..+|++.|+++.++||||++++||.
T Consensus 90 ~aaiiaL~i~~~~~iar~~~~~i~~V~~g~~EAa~alG~s~~q~i~~viLPqAlp~ii~~~~~~~i~~i~~tsl~g~IG~ 169 (217)
T PRK10782 90 QAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGA 169 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999899999999999839987999999839898899485107921999999999999999999999999810
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999974101003551369999999999999999999999999998433
Q gi|254780172|r 330 FDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHK 382 (386)
Q Consensus 330 ~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~ 382 (386)
.|+...+.+...+. |+..+.+. +.+++.++++.++..++++|||+++
T Consensus 170 ggLG~~a~~~~~~~-----~~~~~~~~-v~~l~~ilv~~i~~~~~~l~k~~~~ 216 (217)
T PRK10782 170 GGLGQIGYQYGYIG-----YNATVMNT-VLVLLVILVYLIQFAGDRIVRAVTH 216 (217)
T ss_pred CHHHHHHHHHHHHH-----CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 47899999999985-----15109999-9999999999999999999998637
No 11
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems. The region covered by this entry generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.95 E-value=8.5e-28 Score=185.68 Aligned_cols=97 Identities=41% Similarity=0.691 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 11002478779999999999987567754441278688999789888876147228999999997664155887738799
Q gi|254780172|r 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLL 250 (386)
Q Consensus 171 t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~ 250 (386)
...+.|+..|+.+++.|+++|+++|+++|++|.|++|++|+.++.|||++||+|+++|+|+.||+||.+ |+++|+++
T Consensus 3 p~l~~G~~~Tl~~~~~~~~~g~~~Gl~~al~r~s~~~~l~~~~~~Y~~~~Rg~PlLvqlf~~yfgLP~~---Gi~l~~~~ 79 (99)
T TIGR01726 3 PFLLKGLLLTLLISVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLI---GIRLSPLT 79 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHH
T ss_conf 789999999999999999999999999999987135999999999999996207999999999843542---77067789
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999989998999999
Q gi|254780172|r 251 RALLGVSAFASAYIAEVLRG 270 (386)
Q Consensus 251 ~a~i~l~l~~aAy~aEi~Rg 270 (386)
+|++|+++|+|||+||++||
T Consensus 80 Aa~~al~l~~~AY~aEi~R~ 99 (99)
T TIGR01726 80 AAVIALTLFEGAYLAEIFRG 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999879999876539
No 12
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=6.5e-17 Score=120.40 Aligned_cols=200 Identities=24% Similarity=0.374 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-CCCCC
Q ss_conf 0024787799999----999999875677544412---786889997898888761472289999999976641-55887
Q gi|254780172|r 173 LWGGLLVTLVISF----FGIIISMPLGILLALGRN---SNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLF-LPDTW 244 (386)
Q Consensus 173 ~~gGl~~Tl~l~~----~~~~~~~~lG~llal~r~---s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~-lp~g~ 244 (386)
.|-+..-|+.+.. ++.++|+|+|+++.+.+. .++|.++++....++++|++|.+.++. .++|+- +-.|.
T Consensus 14 l~~a~~eTlyMv~~s~~~~~~iGlplGvlL~~T~~g~i~~n~~~~~il~~ivNi~Rs~PFiILlv---~liP~Tr~ivGT 90 (222)
T COG2011 14 LWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSAIVNILRSIPFIILLV---ALIPLTRLIVGT 90 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHC
T ss_conf 99999999999999999999998766343678178861300889999999999875120999999---999889999726
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 73879999999999989998999999998458667899999621689999999969989986200479999999612899
Q gi|254780172|r 245 DVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLI 324 (386)
Q Consensus 245 ~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~ 324 (386)
.+. -.++++.+++-...|.|..+..++..||||-.|||+|+|-|+||..++|.+|.|+.-.+-+++-..|+++--|+.+
T Consensus 91 siG-~~AAivPL~i~a~PF~ARlve~aL~EVd~GvIEAA~amGAs~~~II~kVlLpEa~p~li~g~Tvt~I~LIg~SAMA 169 (222)
T COG2011 91 SIG-TTAAIVPLTIGAAPFVARLVESALREVDKGVIEAAQAMGASPWQIIRKVLLPEALPGLVSGITVTLISLIGYSAMA 169 (222)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 525-3047741678888899999999997447258999998499888887873262136789988999999998088883
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999974101003551369999999999999999999999999998433
Q gi|254780172|r 325 SIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHK 382 (386)
Q Consensus 325 ~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~ 382 (386)
-.||-.-+=..+-...- ++ +..|+...+-++-.+++..+....+++-||+++
T Consensus 170 GaIGgGGLGdlAiryGY----~R--f~~~Vm~~~viillilVq~iQ~~Gd~l~~r~~k 221 (222)
T COG2011 170 GAIGGGGLGDLAIRYGY----QR--FNTDVMVVAVVILLILVQLIQSLGDRLVRRLDK 221 (222)
T ss_pred CCCCCCCHHHHHHHHHH----HH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 02266733699999878----85--588315799999999999999998999999714
No 13
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=99.77 E-value=1.3e-16 Score=118.60 Aligned_cols=154 Identities=24% Similarity=0.320 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 78779999999999987567754441278688999789888876147228999999997664155887738799999999
Q gi|254780172|r 177 LLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGV 256 (386)
Q Consensus 177 l~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~~a~i~l 256 (386)
+..|+.+++.+.++++++|+.+|.....+.+..+......+++.+.+|.++..+.....+..........+.....++..
T Consensus 1 l~nSl~i~~~~~~i~~~ig~~~a~~~~~~~~~~~~~~~~~~~i~~~iP~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (190)
T cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80 (190)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98799999999999999999999999951850889999999999980399999999999984123221478999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99989998999999998458667899999621689999999969989986200479999999612899999999
Q gi|254780172|r 257 SAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMF 330 (386)
Q Consensus 257 ~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~ 330 (386)
.....+|.....+++++++|+++.|||+++|.|++|++++|++||+.+..+......++..++|.+..+.+|-.
T Consensus 81 ~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Ga~~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~~~~~l~~~ 154 (190)
T cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154 (190)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999998389999999998699734656998799639999999999999999999999999689
No 14
>PRK11275 pstC phosphate transporter permease subunit; Provisional
Probab=99.76 E-value=1.8e-15 Score=111.67 Aligned_cols=212 Identities=22% Similarity=0.269 Sum_probs=155.0
Q ss_pred CCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHC------
Q ss_conf 1002478---779999999999987567754441-2786889997898888761472289999999976-6415------
Q gi|254780172|r 172 SLWGGLL---VTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVTVLFMASIML-PLFL------ 240 (386)
Q Consensus 172 ~~~gGl~---~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~l-p~~l------ 240 (386)
+.+|.++ -|+.++..+++++.|+|+..|+-- ....+.+|......+|+.-|+|-++.=+++.+.+ |.+.
T Consensus 67 ~~~Gi~~~i~GTl~~s~iAllia~Plgi~~Aiyl~eya~~~~~~~l~~~ielLagIPSVV~Gl~Gl~v~~p~~~~~~~~~ 146 (319)
T PRK11275 67 DIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEP 146 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87782999999999999999999999999999999976685898999999998217589999999999999999875455
Q ss_pred --------C------CC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf --------5------88--7738799999999999899989999999984586678999996216899999999699899
Q gi|254780172|r 241 --------P------DT--WDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIK 304 (386)
Q Consensus 241 --------p------~g--~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr 304 (386)
| .| .. .....+-+.+++-.-.|++.+.|-++++||+.+.|||.|||.|+||+.++|++|.|.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~G-~s~l~a~i~LaiMilP~i~s~s~eal~~VP~~~reaa~ALGatrw~ti~~VvlP~a~~ 225 (319)
T PRK11275 147 VGNILSNIPIVGALFSGPAFG-IGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKN 225 (319)
T ss_pred HHHHCCCHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 654412104677761477644-0289999999999999999999999996889999999983997999999999998886
Q ss_pred HHHCCHHHHHHHHHHHHHH-HHHHHHH------HHHHHHHH----HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8620047999999961289-9999999------99999999----74101003551369999999999999999999999
Q gi|254780172|r 305 RVIPGIVNTFIGLFKDSSL-ISIINMF------DLLGIVRV----NFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYS 373 (386)
Q Consensus 305 ~~iP~l~n~~i~l~KdTsL-~~~Ig~~------el~~~~~~----~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~ 373 (386)
-++-+.+=-+--.+-+|-- ..++|-. ++...++. +.++-.......+......++++-+++++.+...+
T Consensus 226 GI~~gviLg~gRAlGETmaV~mv~Gn~~~~~~~~lf~p~~Tlts~Ia~~~~ea~~g~~~~al~a~glvLfvit~i~N~~a 305 (319)
T PRK11275 226 GVIGGVMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLAAS 305 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999889999999278766898764565508999999963135774899999999999999999999999
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999843378
Q gi|254780172|r 374 VFIEKTLHKGS 384 (386)
Q Consensus 374 ~~lE~rl~~~~ 384 (386)
+.+-||+++.+
T Consensus 306 ~~iv~R~~k~~ 316 (319)
T PRK11275 306 KLMIMRLAKNE 316 (319)
T ss_pred HHHHHHHHHHC
T ss_conf 99999987523
No 15
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional
Probab=99.72 E-value=6.9e-16 Score=114.24 Aligned_cols=159 Identities=19% Similarity=0.226 Sum_probs=114.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH------HHC-
Q ss_conf 1111002478779999999999987567754441-27868899978988887614722899999999766------415-
Q gi|254780172|r 169 VETSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVTVLFMASIMLP------LFL- 240 (386)
Q Consensus 169 V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp------~~l- 240 (386)
-+++.|..+..|+.+++.+..+++++|+.+|..- +.+.|- |.+....+.+==.+|.++.-+.-..+++ .++
T Consensus 58 ~dp~~~~al~~Tl~~a~~~~~i~lvlG~~lA~~l~r~~f~g-r~~~~~l~~lP~~ip~vV~g~~~~~l~~~~G~l~~~L~ 136 (291)
T PRK11602 58 ADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPG-RQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLD 136 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 39789999999999999999999999999999999278860-89999999998863799999999998264437899998
Q ss_pred CCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 588773-8799999999999899989999999984586678999996216899999999699899862004799999996
Q gi|254780172|r 241 PDTWDV-DKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFK 319 (386)
Q Consensus 241 p~g~~~-~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~K 319 (386)
..|++. ..+...+++.......|+.-.++++++++|+.+.|||+.+|-|+||++++|++|+..+..+-+..=.++.-++
T Consensus 137 ~~~~~~~~s~~giil~~v~~~~Pf~~~~~~a~l~~i~~~l~EAA~~lGAs~wq~F~~VtLPll~P~i~~g~iL~f~~al~ 216 (291)
T PRK11602 137 EHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIG 216 (291)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55832867789999999999999999999999986895899999876999878989864983099999999999999987
Q ss_pred HHHHHHHHH
Q ss_conf 128999999
Q gi|254780172|r 320 DSSLISIIN 328 (386)
Q Consensus 320 dTsL~~~Ig 328 (386)
|=..+++++
T Consensus 217 ~Fg~v~~l~ 225 (291)
T PRK11602 217 EFGAVSVVS 225 (291)
T ss_pred HCCCHHEEE
T ss_conf 568043115
No 16
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Probab=99.70 E-value=1.6e-14 Score=105.97 Aligned_cols=220 Identities=18% Similarity=0.190 Sum_probs=146.9
Q ss_pred CCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 3333574111-----111002478779999999999987567754441-2786889997898888761472289999999
Q gi|254780172|r 160 LYGGLGLSIV-----ETSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVTVLFMAS 233 (386)
Q Consensus 160 l~gg~gl~~V-----~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~ 233 (386)
-.|++|++.- +.+.|..+..|+.+++.+.++++.+|+.+|+.- +.+.| -|......+.+--.+|-++.-+...
T Consensus 72 ~~g~~gl~ny~~~f~~~~~~~al~nTl~~a~~~t~~~lvlG~~lA~~L~r~~f~-g~~~l~~ll~lp~~lP~~v~a~a~~ 150 (312)
T TIGR03226 72 AHGEIGLAAFRHFFASHDFRDALGNTLQIAFAAAAGALLLGSALAAILFFIPFP-GAELIGRFLDLFIAFPSFLIAFAFI 150 (312)
T ss_pred CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 989863999999977967999999999999999999999999999999962376-2899999999999988999999999
Q ss_pred HHHHH------HCC--CCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 97664------155--88773------87999999999998999899999999845866789999962168999999996
Q gi|254780172|r 234 IMLPL------FLP--DTWDV------DKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIM 299 (386)
Q Consensus 234 ~~lp~------~lp--~g~~~------~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~Iil 299 (386)
.++.. .+- .|++. ......+++.+.++-.|+.-.+.++++++|+.+.|||+.+|-|+||++|+|++
T Consensus 151 ~l~~~~G~ln~~L~~l~gl~~~p~~~l~s~~gVvla~i~~~~Pf~~l~~~a~l~~id~~l~EAA~~lGAs~~~~Fr~VtL 230 (312)
T TIGR03226 151 FIYGSAGLLNGALMRAFAFDAPPLDFLFGAGGVILAEITFFTPFVMRPLLAAFAQIDKRLLEAASILGAHGLMLAGQVIF 230 (312)
T ss_pred HHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99835770779999962866774577740999999999998999999999999968978999998849998886787427
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899862004799999996128999999999999999974101003551369999999999999999999999999998
Q gi|254780172|r 300 PQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKT 379 (386)
Q Consensus 300 PQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~r 379 (386)
|+..+..+-+..=.|+..+.|=....++|-.+.......+.++-.-.. ....=...+++-++++..+-.+.++++||
T Consensus 231 Pll~P~i~ag~lL~Fi~~~~~F~~~~~lgg~~~~tl~~~Iy~~~~~~~---d~~~AaAlavillv~~l~l~~l~r~~~rR 307 (312)
T TIGR03226 231 PAALPAIAAGGILCFLLTLNEFGILLFIGAAGLITLPMAIYSKAILDI---DLPAAAAGALIMIALSLALFALYRLAARR 307 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 846899999999999999977541134408997017999999998757---98999999999999999999999999876
Q ss_pred HCCC
Q ss_conf 4337
Q gi|254780172|r 380 LHKG 383 (386)
Q Consensus 380 l~~~ 383 (386)
-+.|
T Consensus 308 ~~~~ 311 (312)
T TIGR03226 308 AGEG 311 (312)
T ss_pred CCCC
T ss_conf 3489
No 17
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.69 E-value=6.6e-15 Score=108.33 Aligned_cols=179 Identities=20% Similarity=0.286 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98756775444127868899978988887614722899999999766415588773879999999999989998999999
Q gi|254780172|r 191 SMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRG 270 (386)
Q Consensus 191 ~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~~a~i~l~l~~aAy~aEi~Rg 270 (386)
|.|+|+..|. ++.+.++.....++++++++|.+++..+... .+.. +..-+.....++...+..+.|+..+.+.
T Consensus 1 Gv~lG~~~a~---~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~---~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 73 (183)
T pfam00528 1 GIPLGIIAAL---RRGRRLDRLLRPLIDLLQALPSFVLAILLVV---ISIL-SILGHGILPAIILALLGWAGYARLIRRA 73 (183)
T ss_pred CHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9869999995---0785899999999999998349999999999---9842-3667899999999999999999999999
Q ss_pred HHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC
Q ss_conf 9984586678999996216899999999699899862004799999996128999999----999999999974101003
Q gi|254780172|r 271 GLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIIN----MFDLLGIVRVNFSESTWI 346 (386)
Q Consensus 271 gl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig----~~el~~~~~~~~~~~~~~ 346 (386)
+++++|+++.|||++.|+|++|+++++++|+++...+..+...+...++++..+..++ +..++..+......
T Consensus 74 ~l~~~~~~~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~~GlG~~~~~a~~~~d~---- 149 (183)
T pfam00528 74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDY---- 149 (183)
T ss_pred HHHHCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----
T ss_conf 9970689999999986998434129921898999999999999999999999999993689675999999997709----
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5513699999999999999999999999999984337899
Q gi|254780172|r 347 SSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGSKK 386 (386)
Q Consensus 347 ~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~rR 386 (386)
........+.+++++.++.. ...+++.+++..||
T Consensus 150 --~~~~~~~~~~~~~~~~~~~~----~d~l~~~ldpr~r~ 183 (183)
T pfam00528 150 --PEIQGPVLAAALILLLLNLL----VDILQRLLDPRVRK 183 (183)
T ss_pred --HHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCC
T ss_conf --99999999999999999999----99999873910178
No 18
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.69 E-value=2.4e-14 Score=105.01 Aligned_cols=226 Identities=14% Similarity=0.194 Sum_probs=142.8
Q ss_pred HHHHHHHHHCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 998898851333357411-----1111002478779999999999987567754441-2786889997898888761472
Q gi|254780172|r 151 LFPIFSFFVLYGGLGLSI-----VETSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVP 224 (386)
Q Consensus 151 ~~pil~~~Ll~gg~gl~~-----V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~P 224 (386)
.+|......-.++++++. -+++.|..+..|+.+++.+.+++..+|+.+|..- +.+.| -|......+.+=-.+|
T Consensus 29 l~Pl~~l~~~~~~~~l~ny~~~f~dp~~~~al~nTl~ia~~~t~i~~vlG~~~A~~l~r~~f~-gr~~l~~l~~lP~~iP 107 (277)
T PRK10971 29 LLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFP-GRTLLDALMDLPFALP 107 (277)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHH
T ss_conf 999999999981699999999987988999999999999999999999999999999915887-3899999999999989
Q ss_pred HHHHHHHHHHHH------HHHC-CCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 289999999976------6415-588773-87999999999998999899999999845866789999962168999999
Q gi|254780172|r 225 LVTVLFMASIML------PLFL-PDTWDV-DKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRL 296 (386)
Q Consensus 225 li~~lf~~~~~l------p~~l-p~g~~~-~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~ 296 (386)
-++.-+--..++ ..++ .-|++. ..+...+++.....-+|+.-.++++++++|+.+.|||+.+|-|+||++++
T Consensus 108 ~~V~g~~~~~lf~~~G~~~~~l~~~gi~~~~~~~giii~~~~~~~Pf~~~~~~a~l~~id~~leEAA~~lGAs~~~~f~~ 187 (277)
T PRK10971 108 TAVAGLTLASLFSVNGWYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRK 187 (277)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999998466542667899759641012999999999999899999878999848999999998649986573041
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 996998998620047999999961289999999-----999999999741010035513699999999999999999999
Q gi|254780172|r 297 IIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM-----FDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISL 371 (386)
Q Consensus 297 IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~-----~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~ 371 (386)
|++|+..+..+-+..-.|+.-++|-.....+|- .+.+.. .+..+.+ .+.+ ..-..++.+-.+++..+-.
T Consensus 188 V~lPll~P~i~~g~ll~F~~s~~~f~~~~~l~G~~~~~t~tl~~--~iy~~~~-~~d~---~~a~Als~ill~~sli~~~ 261 (277)
T PRK10971 188 VVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSL--MIFVRLQ-EFDY---PAASAIASVILAASLLLLF 261 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH--HHHHHHH-CCCH---HHHHHHHHHHHHHHHHHHH
T ss_conf 03985799999999999999998760675001799886514999--9999998-7688---9999999999999999999
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999984337
Q gi|254780172|r 372 YSVFIEKTLHKG 383 (386)
Q Consensus 372 ~~~~lE~rl~~~ 383 (386)
..++++||.+|.
T Consensus 262 ~~~~l~~R~~Rr 273 (277)
T PRK10971 262 SINTLQSRFGRR 273 (277)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999875
No 19
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed
Probab=99.68 E-value=5.9e-14 Score=102.62 Aligned_cols=210 Identities=18% Similarity=0.204 Sum_probs=134.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH------HCC-
Q ss_conf 111002478779999999999987567754441-278688999789888876147228999999997664------155-
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPL------FLP- 241 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~------~lp- 241 (386)
+.+.|.-+..|+.+++.+.++++++|+.+|..- +.+.| .|......+.+--.+|-++.-+.....+.. ++.
T Consensus 4 ~p~~w~al~~Sl~~a~~s~~~~~~ig~~~A~~l~r~~~~-~~~~l~~l~~lp~~~P~iv~~~~~~~~~~~~g~~~~~l~~ 82 (229)
T PRK09421 4 SPPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFP-GKSLLDSVVHLPLVLPPVVTGYLLLISMGRRGFIGQWLYE 82 (229)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 889999999999999999999999999999999961353-0899999999999989999999999971445852678999
Q ss_pred -CCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf -887738-799999999999899989999999984586678999996216899999999699899862004799999996
Q gi|254780172|r 242 -DTWDVD-KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFK 319 (386)
Q Consensus 242 -~g~~~~-~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~K 319 (386)
-|...+ .+...+++..+..-.|+.-.++++++++|+...|||+.+|-|+||++++|++|++.+..+-+..-.|+.-+.
T Consensus 83 ~~gi~~~~~~~g~~l~~~~~~~P~~~~~~~~~l~~i~~~l~EAA~~lGAs~~~~f~~V~lPl~~P~i~~~~il~F~~s~~ 162 (229)
T PRK09421 83 WFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLG 162 (229)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 82822234599999999999999999999999985998999999885992646759989998999999999999999999
Q ss_pred HHHHHHHH--HHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 12899999--999999-99999741010035513699999999999999999999999999984337
Q gi|254780172|r 320 DSSLISII--NMFDLL-GIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKG 383 (386)
Q Consensus 320 dTsL~~~I--g~~el~-~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~ 383 (386)
|-...... +.++-+ ...-.+.+..+..+ ... .-...+++-.+++...-.+.++++||-++.
T Consensus 163 ef~~~~~l~~~~p~~~~tl~~~iy~~~~~~~-~~~--~aa~l~~v~i~~~~~~ll~~~~l~rR~~~r 226 (229)
T PRK09421 163 EFGATITFVSNIPGETQTIPSAMYTLIQTPG-GES--AAARLCIISIAIALASLLLSEWLARRSRKR 226 (229)
T ss_pred HHHHHHHHHCCCCCCCEEHHHHHHHHHHCCC-CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9769998954899860217999999987389-689--999999999999999999999999998765
No 20
>PRK10160 taurine transporter subunit; Provisional
Probab=99.65 E-value=2.3e-13 Score=99.14 Aligned_cols=200 Identities=20% Similarity=0.230 Sum_probs=138.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 11110024787799999999999875677544412786889997898888761472289999999976641558877387
Q gi|254780172|r 169 VETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDK 248 (386)
Q Consensus 169 V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~ 248 (386)
.+.++|..+..|+.-.+.|..+|..+|+.+++.- ...|.++....-+++++|.+|.+.+.-+....+ |.....
T Consensus 72 ~~g~l~~~~~~Tl~r~~~Gf~la~~~Gv~lGil~-g~~~~~~~~l~P~l~~l~~iP~ial~Pl~ilwf------G~g~~~ 144 (275)
T PRK10160 72 MDATLWQHLAASLTRIVLALLAAVVIGIPVGIAM-GLSPTVRGILDPLIELYRPVPPLAYLPLMVIWF------GIGETS 144 (275)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH------CCCCCC
T ss_conf 7754999999999999999999999999999999-987999999999999998588999999999853------578400
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999899989999999984586678999996216899999999699899862004799999996128999999
Q gi|254780172|r 249 LLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIIN 328 (386)
Q Consensus 249 ~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig 328 (386)
.++...+..--.+.-....|++++|+...|+|+++|.|++|.+++|++|+|++..+.++--.+..-.+..-.+-.+|
T Consensus 145 ---~i~vv~l~~~fpi~~nt~~Gvr~vd~~l~e~ar~~gas~~q~~~~V~lP~alP~i~~GlRi~~~~a~~~~v~aE~l~ 221 (275)
T PRK10160 145 ---KILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIA 221 (275)
T ss_pred ---HHEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---61010287540899999999971899999999982999999999988887899999999999999999999999983
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999997410100355136999999999999999999999999999843378
Q gi|254780172|r 329 MFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGS 384 (386)
Q Consensus 329 ~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~ 384 (386)
-.+ |.+..+....+ ...++......++.-++.+.+....+.+|||+-+=|
T Consensus 222 ~~~--GLG~~I~~a~~----~~~~~~~~a~ii~i~llg~~l~~~~~~lerrl~~W~ 271 (275)
T PRK10160 222 ATR--GLGFMVQSAGE----FLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPWH 271 (275)
T ss_pred CCC--CHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 479--87899999998----637899999999999999999999999998918789
No 21
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=5.8e-13 Score=96.67 Aligned_cols=213 Identities=20% Similarity=0.321 Sum_probs=150.5
Q ss_pred CCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHCC---
Q ss_conf 110024787---799999999999875677544412--78688999789888876147228999999997-664155---
Q gi|254780172|r 171 TSLWGGLLV---TLVISFFGIIISMPLGILLALGRN--SNIPVLRYACITFIELFRGVPLVTVLFMASIM-LPLFLP--- 241 (386)
Q Consensus 171 t~~~gGl~~---Tl~l~~~~~~~~~~lG~llal~r~--s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~-lp~~lp--- 241 (386)
...+|.++. |+..++.+++++.|+|+..|+--. +..+.+|.....-+|+.-|+|-++-=||+.+. -|.+-+
T Consensus 72 ~~~~G~l~~i~GTli~s~iA~liAvP~gi~~Aifl~E~~~p~~~r~~l~~~iElLAgIPSVVYG~fgl~vl~P~l~~~~~ 151 (310)
T COG0573 72 QPQYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFGLFVLAPFLRDVFG 151 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76556499999999999999999987888968887763582878888999999981697117789999999999999852
Q ss_pred --CCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf --88773----879999999999989998999999998458667899999621689999999969989986200479999
Q gi|254780172|r 242 --DTWDV----DKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFI 315 (386)
Q Consensus 242 --~g~~~----~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i 315 (386)
.+..+ .....+.+.+++---.|++-+-|..+.+||+-+.||+.+||.++||+.++|++|-|..-++-+.+=-+-
T Consensus 152 ~~~~~~~~~~g~~~L~a~ivL~IMIiP~i~Sls~da~~~VP~~lreas~aLGaTkweti~kVilpaa~~GIv~a~iLglg 231 (310)
T COG0573 152 PPLGFNLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSLREAAYALGATKWETIRKVILPAARSGIVGAVILGLG 231 (310)
T ss_pred CCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 20001036455209999999999999999999999999587999999987388710043365398668779999999988
Q ss_pred HHHHHHHHH-HHHH--------HHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999612899-9999--------999999-9999741010035513699999999999999999999999999984337
Q gi|254780172|r 316 GLFKDSSLI-SIIN--------MFDLLG-IVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKG 383 (386)
Q Consensus 316 ~l~KdTsL~-~~Ig--------~~el~~-~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~ 383 (386)
--+-+|=-+ .++| +.|-.+ .+..+.++......+.+...+...+++-|++++.+.-+++++.||.++.
T Consensus 232 RAiGETmAV~mv~Gn~~~~~~slf~p~~Tits~ia~~~gea~~~~~~~aL~~~glvLfvitl~~n~~a~~i~~r~~~~ 309 (310)
T COG0573 232 RALGETMAVTMVIGNTARIPLSLFSPGTTLTSIIANEFGEASGGLHTSALFALGLVLFVITLLLNILARYIVRRRRRK 309 (310)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 987289999999617555775436886549999999863123126899999999999999999999999997666336
No 22
>COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.3e-12 Score=94.57 Aligned_cols=258 Identities=18% Similarity=0.190 Sum_probs=163.0
Q ss_pred HHEEEECHHHCCCHHHHHHHHHHHHHHH-HH-CCHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 6225525111430568999999999997-40-0011-1233346899999889885133335741111110024787799
Q gi|254780172|r 106 FIFGNYPMAQRWRPILVFLTGSILLTPM-LI-PSFP-RKFLNSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGLLVTLV 182 (386)
Q Consensus 106 ~lyG~YP~~e~WRv~la~ill~vll~~~-l~-~~~~-~k~~~~l~~~~~~pil~~~Ll~gg~gl~~V~t~~~gGl~~Tl~ 182 (386)
-.+...+.+..|+.++..++..+.+... .. .... ...... ..-...-...-+ +.-.+.......+.|..++.|+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f-f~pd~~~~~~~~~~~~~ll~Tl~ 96 (283)
T COG3639 19 QNISQLKRDRSKFRLLILLVIIALLVWSSWFFTEVDFPLLFIG-GANQMADFFSDF-FPPDFALFSQLPDILTALLQTLA 96 (283)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC-CHHHHHHHHHHH-CCCCHHHHCCHHHHHHHHHHHHH
T ss_conf 2100033034788999999999999999998740354777740-248899999974-79961432003157999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999875677544412---78688999789888876147228999999997664155887738799999999999
Q gi|254780172|r 183 ISFFGIIISMPLGILLALGRN---SNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAF 259 (386)
Q Consensus 183 l~~~~~~~~~~lG~llal~r~---s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~~a~i~l~l~ 259 (386)
++..+.++|.++++.+++.-. ...+.++.+.+...+++|.+|-+++-.. ..+.+ | ..-.++++|+.++
T Consensus 97 ma~~gT~l~~i~aipl~flaa~n~~~~~~~~~~~r~ll~~iR~iP~iv~a~i---fv~~~---g---~G~~agilAl~i~ 167 (283)
T COG3639 97 IAFAGTLLAAILAIPLAFLAARNLSPKRWISFPVRRLLDFIRTIPELVWALL---FVAAF---G---LGPFAGVLALGIY 167 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH---C---CCHHHHHHHHHHH
T ss_conf 9999999999999999999731258641289999999999976429999999---99985---7---8547789999998
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89998999999998458667899999621689999999969989986200479999999612899999999999999997
Q gi|254780172|r 260 ASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVN 339 (386)
Q Consensus 260 ~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~el~~~~~~~ 339 (386)
+....+..+.-+++++++|+.|+-++.|.|+.|..++=++||..+.-+--..=.+=.-+.+.++...+|-.-+-..-...
T Consensus 168 t~g~LgKl~~e~iE~id~~p~e~l~a~Gas~~~~~~~~vlPqv~p~f~s~~lyrfE~n~R~a~VlG~vGaGGIG~~L~~~ 247 (283)
T COG3639 168 TIGILGKLYAEALESIDTGPGEALRATGASRLQLILFGVLPQIKPNFISYSLYRFESNIRAAAVLGLVGAGGIGQRLMNS 247 (283)
T ss_pred HCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 02199999999998457767899998368614533112001241889999999999875788998732554277999988
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 410100355136999999999999999999999999999843
Q gi|254780172|r 340 FSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLH 381 (386)
Q Consensus 340 ~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~ 381 (386)
.+.-+ +..+ .. .-+.-++....+...|.++-||+.
T Consensus 248 ~~~~~----~d~v--~~-i~l~i~v~V~~id~iS~~iR~r~~ 282 (283)
T COG3639 248 ISLFQ----WDKV--AT-IILPILVLVILIDLISAKIRKRLL 282 (283)
T ss_pred HHHCC----HHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 74404----7576--99-999999999999999999999850
No 23
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional
Probab=99.61 E-value=2.6e-13 Score=98.80 Aligned_cols=197 Identities=17% Similarity=0.230 Sum_probs=133.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 11100247877999999999998756775444127868899978988887614722899999999766415588773879
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKL 249 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~ 249 (386)
+.++|..+..|+.-...|..+|..+|+.+++.. ...+.++....-+++++|.+|.+.++-+....+ |.....-
T Consensus 55 ~g~l~~~~~~Tl~r~~~Gf~l~~~~Gi~lGil~-g~~~~~~~~~~P~~~~l~~iP~ia~~Pl~ilwf------G~g~~~~ 127 (263)
T PRK11365 55 SGELWQHLAISSWRALIGFSIGGSLGLILGLIS-GLSRWGERLLDTSIQMLRNVPHLALIPLVILWF------GIDESAK 127 (263)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHH------CCCCCHH
T ss_conf 845999999999999999999999999999999-986999987585999997657999999999997------1574204
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998999899999999845866789999962168999999996998998620047999999961289999999
Q gi|254780172|r 250 LRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329 (386)
Q Consensus 250 ~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~ 329 (386)
. .++++..+ -.+.-..+.|++++|+...|.|+++|.|++|.+++|++|.|++..+.++-...-.-.+..-.+-.+|-
T Consensus 128 i-~~i~~~~~--~pi~~nt~~Gv~~v~~~~~~~ar~~g~s~~~~l~~V~lP~alP~i~~glria~~~a~~~~v~aE~i~~ 204 (263)
T PRK11365 128 I-FLVALGTL--FPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISA 204 (263)
T ss_pred H-HHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4-78865104--28899998887549999999998729999999999898006889999999999999999999999844
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999974101003551369999999999999999999999999998433
Q gi|254780172|r 330 FDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHK 382 (386)
Q Consensus 330 ~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~ 382 (386)
.+ |.+..+....+ ....+......++--++.+.+....+++|||+-+
T Consensus 205 ~~--GLG~~i~~a~~----~~~~~~v~a~ii~i~llg~~l~~~~~~lerrll~ 251 (263)
T PRK11365 205 NS--GIGYLAMNARE----FLQTDVVVVAIILYALLGKLADVSAQLLERLWLR 251 (263)
T ss_pred CC--CHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 69--88899999998----7068899999999999999999999999999388
No 24
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=99.59 E-value=6.2e-13 Score=96.51 Aligned_cols=202 Identities=15% Similarity=0.189 Sum_probs=137.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 111002478779999999999987567754441-2786889997898888761472289999999976641558877387
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDK 248 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~ 248 (386)
+.+.+..+..|+.+++.+.+++.++|...|..- +.+.|- |......+.+---+|-++.-.-....+.. .|.. +.
T Consensus 53 ~~~~~~~~~nSl~ia~~~~~~~~~lg~~~A~~l~r~~~~~-~~~~~~l~~~p~~~P~~v~~i~l~~~~~~---~g~~-~~ 127 (257)
T PRK09500 53 NDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRG-KKFVSGMLFVVMMSPDIVMAISLLVLFML---LGIQ-LG 127 (257)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHH-HH
T ss_conf 9379999999999999999999999999999997526774-56999999999997999999999999997---3513-20
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999899989999999984586678999996216899999999699899862004799999996128999999
Q gi|254780172|r 249 LLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIIN 328 (386)
Q Consensus 249 ~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig 328 (386)
+...+++...+.-.|.--.++++++++|+...|||+.+|-|+||++++|++|++.+-.+-+..-.|+.-+.|=.....++
T Consensus 128 ~~~lil~~~~~~lP~~~~~i~~~l~~i~~~l~EAA~~lGAs~~~~f~~VilPl~~P~i~~~~il~F~~s~~ef~~~~~l~ 207 (257)
T PRK09500 128 FWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVT 207 (257)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999888885150279999999971796999999872999879636312984799999999999999999999999752
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999741010035513699999999999999999999999999984
Q gi|254780172|r 329 MFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTL 380 (386)
Q Consensus 329 ~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl 380 (386)
-.|.......+.+..+ .+. .+ .....+.+..+++..+-.+.+++-||-
T Consensus 208 g~~~~tlp~~i~~~~~-~~~-~~--~~~Ala~il~~i~~~~~~l~~~l~r~~ 255 (257)
T PRK09500 208 GPSYEILPLKIYSMVK-VGV-SP--EVNALATILLVLSLVLVILSQLLARDK 255 (257)
T ss_pred CCCCEEHHHHHHHHHH-CCC-CH--HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8996028999999987-378-75--999999999999999999999986654
No 25
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC; InterPro: IPR011864 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family describes PstC, which is homologous to PstA (IPR005672 from INTERPRO). In the Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016021 integral to membrane.
Probab=99.59 E-value=1.5e-12 Score=94.12 Aligned_cols=209 Identities=21% Similarity=0.340 Sum_probs=153.0
Q ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHCC-----C
Q ss_conf 0024787---79999999999987567754441-2786889997898888761472289999999976-64155-----8
Q gi|254780172|r 173 LWGGLLV---TLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVTVLFMASIML-PLFLP-----D 242 (386)
Q Consensus 173 ~~gGl~~---Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~l-p~~lp-----~ 242 (386)
.+|.++. |++.|++++++++|+|+..|+-- ..-.|-+|..-+..+|+.=|+|-++-=||+.+.+ |++-+ .
T Consensus 66 ~yG~l~~i~GTl~~~~~A~liA~P~~i~~Aif~~e~aP~~~~~~l~~~~ELLAgIPSVvYG~wG~~~l~P~l~~~~~~~~ 145 (317)
T TIGR02138 66 QYGALPLIVGTLITSLIAILIAVPVGIGIAIFLSEIAPKRVKSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKDHFQPFL 145 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 45669999999999999999999999999999998525113569999999972235999999999999999999886786
Q ss_pred CCCC-------------C---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8773-------------8---79999999999989998999999998458667899999621689999999969989986
Q gi|254780172|r 243 TWDV-------------D---KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRV 306 (386)
Q Consensus 243 g~~~-------------~---~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~ 306 (386)
+.++ + ....+-+.|+.--=.+++=+.|..+.+||+-+.||+.|||.|+||+.|+|++|-|.+=+
T Consensus 146 ~~~~~~iP~~~~~~~~~~~G~~~L~a~~vL~IMIlPt~as~s~D~~~~VP~~~kea~~ALGAT~wetI~~v~lP~a~~GI 225 (317)
T TIGR02138 146 GSNFGWIPLFGQLFSGPPNGYGLLTAGIVLAIMILPTIASISRDALRAVPRSYKEASLALGATKWETIRKVILPAARSGI 225 (317)
T ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 53135323212236899831689999999999999999999999997355678889877068604335553320002189
Q ss_pred HCCHH-------HH--HHHHHHHH--HHH--HHHHHHHH--HHHHHHHHHHH-HCCC-CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20047-------99--99999612--899--99999999--99999974101-0035-5136999999999999999999
Q gi|254780172|r 307 IPGIV-------NT--FIGLFKDS--SLI--SIINMFDL--LGIVRVNFSES-TWIS-SVTPTTGLIFIGFVFWIFCFSI 369 (386)
Q Consensus 307 iP~l~-------n~--~i~l~KdT--sL~--~~Ig~~el--~~~~~~~~~~~-~~~~-~~~~~e~y~~~a~iY~ii~~~l 369 (386)
+-+.+ +| .+.+.-.- ++- +...+.|= +..+..+.+|. |-.+ +..+.+++...|++=|++++.+
T Consensus 226 v~a~~LglGRAlGETmAV~mv~Gn~p~~~~~~~~~~f~~~~~T~~~~Ia~~~g~a~~g~~~~~~aL~~~glvLfvitl~~ 305 (317)
T TIGR02138 226 VGAVVLGLGRALGETMAVAMVIGNAPSLNRPIPLNLFSPYGTTITSLIANEFGEASGGNSVHVSALFALGLVLFVITLLV 305 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999972432344441202233568999999985066668884268999999999999999999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999843
Q gi|254780172|r 370 SLYSVFIEKTLH 381 (386)
Q Consensus 370 s~~~~~lE~rl~ 381 (386)
.-.++++.||.+
T Consensus 306 n~~~~~i~~~~~ 317 (317)
T TIGR02138 306 NILARYIVRRRK 317 (317)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999853069
No 26
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=2.7e-11 Score=86.64 Aligned_cols=150 Identities=18% Similarity=0.284 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 78779999999999987567754--4412786889997898888761472289999999976641558877387999999
Q gi|254780172|r 177 LLVTLVISFFGIIISMPLGILLA--LGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALL 254 (386)
Q Consensus 177 l~~Tl~l~~~~~~~~~~lG~lla--l~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~~a~i 254 (386)
+.-|+.+.+++.++++|+|+.-| +....+...+....+..+|..-|+|-|+.=.+++-.+=..+ |... ...++.+
T Consensus 73 i~GTl~~~~~~~li~~PiGv~aaIYL~EYa~~~~~t~~ir~~i~~La~vPSIV~GLFg~~~fV~~~--g~~~-S~laGaL 149 (292)
T COG0581 73 IVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGLFGLGFFVVTL--GFGF-SALAGAL 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--CCCC-HHHHHHH
T ss_conf 999999999999999989999999999974787299999999998806844999999999999997--7761-7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 999998999899999999845866789999962168999999996998998620047999999961289-999999
Q gi|254780172|r 255 GVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSL-ISIINM 329 (386)
Q Consensus 255 ~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL-~~~Ig~ 329 (386)
++++..=.++.-.-+.++++||+.++|||.+||.++||+.++|++|.|++-++-+..=-.--..-+|+= .+.+|.
T Consensus 150 aLall~LP~iirtteeaL~~VP~~~ReAs~aLGasKwqtI~~vvlP~A~pGIiTGviLaiaR~~GETAPlL~tag~ 225 (292)
T COG0581 150 ALALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQTIFKVVLPAALPGIITGVILAIARAAGETAPLLFTAGM 225 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999988899999999998089999999997498487897888897147589999999999998724899999653
No 27
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=99.58 E-value=5.3e-13 Score=96.91 Aligned_cols=208 Identities=18% Similarity=0.219 Sum_probs=132.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHCCCCCCC
Q ss_conf 11100247877999999999998756775444--12786889997898888761472289999999976-6415588773
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALG--RNSNIPVLRYACITFIELFRGVPLVTVLFMASIML-PLFLPDTWDV 246 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~--r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~l-p~~lp~g~~~ 246 (386)
+.+.+..+..|+.++..+.+++..+|...|.. |.++.|.-+.... .+..=-.+|-++.-.-....+ ....+.|...
T Consensus 58 ~~~~~~a~~~Sl~ia~~~t~i~~~lG~~~A~~l~r~~~~~g~~~~~~-l~~~Pl~vP~iv~gl~l~~~f~~~g~~~g~~~ 136 (281)
T PRK10592 58 DDAMMSAVGLSLTIAACAATMAAILGTIAAVVMVRFGRFRGSNGFAF-MITAPLVMPDVITGLSLLLLFVALGHAIGWPA 136 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 97899999999999999999999999999999998055330699999-99989986789999999999998463225320
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf -8799999999999899989999999984586678999996216899999999699899862004799999996128999
Q gi|254780172|r 247 -DKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLIS 325 (386)
Q Consensus 247 -~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~ 325 (386)
..+...+++...+..+|+.-+++++++.+|+.+.|||+.+|-|++|++++|++|+.....+-+..=.|+.-+-|=....
T Consensus 137 ~~~~~~i~i~~~~~~~P~~~~~i~a~l~~id~~leEAA~~LGAs~~~~f~~V~LPli~Pgiiag~il~F~~s~~ef~~~~ 216 (281)
T PRK10592 137 DRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIAS 216 (281)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02378999999999999999999999985892799999881999888834354171159899999999999998777886
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999974101003551369999999999999999999999999998433
Q gi|254780172|r 326 IINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHK 382 (386)
Q Consensus 326 ~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~ 382 (386)
.+|-.+-......+.++.+ ....+ + --.++.+.++++..+...+.++.+|-++
T Consensus 217 ~l~g~~~~TLpv~iy~~~~--~~~~p-~-~~A~~~l~~~v~~~~~~ia~~l~~R~~k 269 (281)
T PRK10592 217 FVSGPGATTLPMLVFSSVR--MGVNP-E-INALATLILGVVGIVGFIAWYLMARAEK 269 (281)
T ss_pred HEECCCCCCHHHHHHHHHH--CCCCH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2108998456999999987--17987-9-9999999999999999999999988898
No 28
>PRK09433 thiP thiamine transporter membrane protein; Reviewed
Probab=99.57 E-value=1.2e-11 Score=88.87 Aligned_cols=213 Identities=15% Similarity=0.171 Sum_probs=150.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 4111111002478779999999999987567754441----278688999789888876147228999999997664155
Q gi|254780172|r 166 LSIVETSLWGGLLVTLVISFFGIIISMPLGILLALGR----NSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLP 241 (386)
Q Consensus 166 l~~V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r----~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp 241 (386)
...-+++.|..+..++.++..+.+++..+|+.++... ..+.+..+........+--.+|-+++-.-....+..+
T Consensus 320 ~~~~~~~~~~a~~nSl~iA~~aa~la~~lal~la~~~~~~~~r~~~~~~~~l~~~~~lplaiPgiVlg~Gl~ll~~~~-- 397 (536)
T PRK09433 320 EVLAQPALWQALWTSLRIALLAALLAVLLAMALLLSSRELRLRQKALAAQALELSGMLILAMPGLVLATGLFLLLRNF-- 397 (536)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--
T ss_conf 762538899999999999999999999999999999999998501068899999999887332999999999998620--
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 88773879999999999989998999999998458667899999621689999999969989986200479999999612
Q gi|254780172|r 242 DTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDS 321 (386)
Q Consensus 242 ~g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdT 321 (386)
.+.....++-.+++-++..-.|.-...+++++.+|+...|||+++|.++++++++|++|...+..+-+..--|+.-+||-
T Consensus 398 ~~~~~~~~~ivil~~~l~~lP~a~r~l~~~l~~i~~~le~aA~sLGas~~~~f~~I~lPll~p~i~~a~~l~F~~smgEl 477 (536)
T PRK09433 398 TDLPQSALGIVILVNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLVEWRALRRPLAQAFAFACALSLGDF 477 (536)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 24568899999999999999999999999999701759999988699987896985398309999999999999998753
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 899999999999999997410100355136999999999999999999999999999843378
Q gi|254780172|r 322 SLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGS 384 (386)
Q Consensus 322 sL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~ 384 (386)
+.....+-.|.-...-.+.+.. +.++.-| =...+++-.++|...-.+..|+++|-++.+
T Consensus 478 ~a~~ll~~~~~~TLp~~iy~~~---~~~~~~~-Aa~~allL~ll~~~~f~l~er~~~~~~~~~ 536 (536)
T PRK09433 478 GVIALFGSQDFRTLPYLLYQQL---GSYRSQD-AAVTALLLLLLCLLLFTLIERLPGRHAKAD 536 (536)
T ss_pred CHHHEECCCCCCCHHHHHHHHH---HCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7021333999861899999987---2767688-999999999999999999998613566789
No 29
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=99.55 E-value=1.7e-13 Score=99.85 Aligned_cols=211 Identities=17% Similarity=0.085 Sum_probs=129.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH------HHHHCC-C
Q ss_conf 111002478779999999999987567754441278688999789888876147228999999997------664155-8
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIM------LPLFLP-D 242 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~------lp~~lp-~ 242 (386)
+++.|..+..|+.+++.+.++++++|..+|..-....+..|......+-+=--+|-++..+..... ++.++. -
T Consensus 58 ~~~~~~~l~nSl~~a~~~tvi~~~ig~~~A~~l~~~~~~~r~~~~~l~~~P~~~p~~v~~~~~~~~~~~~G~ln~~l~~l 137 (285)
T PRK09497 58 DPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLGTKGYLNEFLLWL 137 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 38999999999999999999999999998886301675438999999999998799999999999814330788999981
Q ss_pred CC---C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 87---7---38799999999999899989999999984586678999996216899999999699899862004799999
Q gi|254780172|r 243 TW---D---VDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIG 316 (386)
Q Consensus 243 g~---~---~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~ 316 (386)
|. + +......+++.....-.|+--.+.+++|++|+.+.|||+.+|-|+||++++|++|+..+-.+.+..=.++.
T Consensus 138 g~~~~p~~~l~~~~~vii~~v~~~lPf~~l~l~a~l~~i~~~l~EAA~~lGAs~~~~F~~I~lPl~~Pgi~~~~il~fi~ 217 (285)
T PRK09497 138 GVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLP 217 (285)
T ss_pred CCCCCCHHHHCCHHHHHHHHHEEECHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEHHEEEHHHHHHHHHHHHHHHHH
T ss_conf 57566235423498887875313120677437878840896899999875999789132022081089999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9961289999999999999999741010035513699999999999999999999999999984337
Q gi|254780172|r 317 LFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKG 383 (386)
Q Consensus 317 l~KdTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~ 383 (386)
-++|=.....+|=.+-...+..+.++.. .....+. =...+++-++++..+.....+.+|++++-
T Consensus 218 s~~~F~~~~~lgG~~~~~l~~~i~~~~~-~~~~~~~--aaA~svil~~i~~~~~~i~~r~~k~~~kk 281 (285)
T PRK09497 218 AMGMFYVSDLLGGAKNLLIGNVIKSQFL-NIRDWPF--GAATSITLTIVMGLMLLVYYRASKLLNKK 281 (285)
T ss_pred HHHHHHEEEECCCCCCCHHHHHHHHHHH-HCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 9887621001048975529999999998-7069069--99999999999999999999999995301
No 30
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=5.3e-12 Score=90.93 Aligned_cols=208 Identities=18% Similarity=0.204 Sum_probs=151.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 11110024787799999999999875677544-41278688999789888876147228999999997664155887738
Q gi|254780172|r 169 VETSLWGGLLVTLVISFFGIIISMPLGILLAL-GRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVD 247 (386)
Q Consensus 169 V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal-~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~ 247 (386)
...+.|..+..|+.++..+.+++..+|+.++. .|+.+.+ .+.....-..+-..+|=+++= .+++ +.+--+.+...+
T Consensus 327 ~~~~~~~a~~nSl~~a~~aa~l~~~~~l~~a~~~~r~~~~-~~~~~~~l~~l~~avPG~Vla-~g~l-~~~~~~~~~~~~ 403 (540)
T COG1178 327 ASPQFWQALLNSLLLALAAALLAVVLALLLAYAVRRLRSR-LSRLLERLSMLPLAVPGVVLA-LGLL-LLFRAPDGLLYQ 403 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHH-HHHH-HHHHCCCCHHCC
T ss_conf 5788999999999999999999999999999999973234-889999998878633699999-9999-998512200003
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 799---99999999989998999999998458667899999621689999999969989986200479999999612899
Q gi|254780172|r 248 KLL---RALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLI 324 (386)
Q Consensus 248 ~~~---~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~ 324 (386)
++. -.+++..+-.-+|.--..+++++.+|+.-.|||+++|-+++|++|+|++|-..+.++-+..=.|+..+||-|..
T Consensus 404 ~~~t~~ilv~a~~~~~~p~a~r~~~a~l~qi~~~leeaa~sLG~~~~~~~~~I~lPll~p~l~~a~~l~F~~s~~Elsat 483 (540)
T COG1178 404 PLYTLLILVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLLAAAALVFALSIGELSAT 483 (540)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_conf 05689999999999998899999999998779749999988599787798998787305889999999999997553768
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999741010035513699999999999999999999999999984337
Q gi|254780172|r 325 SIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKG 383 (386)
Q Consensus 325 ~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~ 383 (386)
...+-.|....+-.+.+..+ .+.+.. =...+.+..++|........+.+++..+.
T Consensus 484 ~lL~~~~~~TL~~~iy~~~~-~~~~~~---Aaa~a~il~~~~~~~~~~~~~~~~~~~~~ 538 (540)
T COG1178 484 LLLGSPGTRTLTVYIYNLLS-DGRYGD---AAALALILLVVSLLLFLLLDRLGEGLRRK 538 (540)
T ss_pred EEECCCCCEEHHHHHHHHCC-CCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 78638996109999999803-611688---89999999999999999999964022544
No 31
>PRK11268 pstA phosphate transporter permease subunit; Provisional
Probab=99.54 E-value=7.2e-12 Score=90.10 Aligned_cols=197 Identities=10% Similarity=0.198 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHCCCCCCCCHHHHH
Q ss_conf 47877999999999998756775444--12786889997898888761472289999999976-6415588773879999
Q gi|254780172|r 176 GLLVTLVISFFGIIISMPLGILLALG--RNSNIPVLRYACITFIELFRGVPLVTVLFMASIML-PLFLPDTWDVDKLLRA 252 (386)
Q Consensus 176 Gl~~Tl~l~~~~~~~~~~lG~llal~--r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~l-p~~lp~g~~~~~~~~a 252 (386)
.+.-|+.++..+.++++|+|+.-|+- ...+...++.+.+..+|..-|+|-|+.=+++|..+ +.+ + +++ .+++
T Consensus 82 aivGTl~~~~~a~lia~Pigi~~aIyL~Eya~~~~~~~~ir~~i~~LagiPSIV~Glfg~~~~v~~~---~-~~s-~lag 156 (292)
T PRK11268 82 AIAGSGLLILWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQM---E-HFS-GWAG 156 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---H-HHH-HHHH
T ss_conf 9999999999999999999999999999976864399999999999842748999999999999852---1-255-7899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 9999999899989999999984586678999996216899999999699899862004799999996128999999999-
Q gi|254780172|r 253 LLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFD- 331 (386)
Q Consensus 253 ~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~e- 331 (386)
.+++++-.=.++.-.-+.++++||+..+|||.|||.++||+.++|++|.|.+-++-+..--+--.+-||+-+...+...
T Consensus 157 ~l~LaimilP~i~~~teeaL~~VP~~lreaa~ALGatkw~ti~~VvlP~A~~GI~tgviLaiaRa~GETApll~ta~~~~ 236 (292)
T PRK11268 157 VIALALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFTALSNQ 236 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999959988999999879986576223760763779999999999999987999999983323
Q ss_pred -----HH----HHHHHHHHHHHCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf -----99----99999741010035513699999999-99999999999999999998
Q gi|254780172|r 332 -----LL----GIVRVNFSESTWISSVTPTTGLIFIG-FVFWIFCFSISLYSVFIEKT 379 (386)
Q Consensus 332 -----l~----~~~~~~~~~~~~~~~~~~~e~y~~~a-~iY~ii~~~ls~~~~~lE~r 379 (386)
+. ...-.+.... ..++........++ ++-.++...++..+|.+-||
T Consensus 237 ~~~~~l~~p~~tLp~~Iy~~a--~~p~~~~~~la~a~alvL~~~vL~lNi~ar~i~rr 292 (292)
T PRK11268 237 FWSTDMMQPIANLPVTIFKFA--MSPFAEWQQLAWAGVLLITLCVLLLNILARVVFAK 292 (292)
T ss_pred CCCCCCCCCCCHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 478997873015489999980--49647799999999999999999999999998559
No 32
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.54 E-value=1.9e-11 Score=87.62 Aligned_cols=152 Identities=18% Similarity=0.324 Sum_probs=118.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 11002478779999999999987567754441278688999789888876147228999999997664155887738799
Q gi|254780172|r 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLL 250 (386)
Q Consensus 171 t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~ 250 (386)
+++|.--..|+.+..++..+++.+|+.++... ++++.++....-..++++-.|-.+.+-- .+.+| |+. -.
T Consensus 82 ~G~W~~am~Tlalv~~av~la~~iGiPlGI~~-~~s~~~~~~l~pild~mQTiP~fvyLip---~i~lf---GiG---~~ 151 (267)
T TIGR03416 82 QGYWEETVETLALVLSATVVCMVIGVPLGIAA-AHRPWLYAIMRPVLDLMQTLPTFVYLIP---ALVLF---GLG---MV 151 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHCCCHHHHHHH---HHHHH---CCC---CH
T ss_conf 71589999999999999999999999999999-8169999999999987431546799999---99994---887---05
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999989998999999998458667899999621689999999969989986200479999999612899999999
Q gi|254780172|r 251 RALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMF 330 (386)
Q Consensus 251 ~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~ 330 (386)
.++++..+|...-+...-.-|+++||+...|||+++|+|++|++++|.+|.|++..+-++-.....-+--..+++.||-.
T Consensus 152 ~aiia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~IGa~ 231 (267)
T TIGR03416 152 PGLISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVGAD 231 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 69999999998899999999998567689999998399898897994184158999999999999999999999996788
Q ss_pred HH
Q ss_conf 99
Q gi|254780172|r 331 DL 332 (386)
Q Consensus 331 el 332 (386)
++
T Consensus 232 GL 233 (267)
T TIGR03416 232 GL 233 (267)
T ss_pred CC
T ss_conf 53
No 33
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.53 E-value=5e-12 Score=91.04 Aligned_cols=204 Identities=16% Similarity=0.169 Sum_probs=143.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC-C
Q ss_conf 10024787799999999999875677544412---7868899978988887614722899999999766415588773-8
Q gi|254780172|r 172 SLWGGLLVTLVISFFGIIISMPLGILLALGRN---SNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDV-D 247 (386)
Q Consensus 172 ~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~---s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~-~ 247 (386)
..|..+..++.++..+..++.++|+..|+... .+.+..+......+.+=-.+|-++.-. ++ +-.|...+.++ +
T Consensus 65 ~~~~a~~~Sl~va~~~a~~a~~lg~~~a~~l~~~~~~~~~~~~~l~~l~~lPl~vP~iv~gl-~l--l~~f~~~~~~l~~ 141 (272)
T TIGR03255 65 AAFDALAASLEIGFCAAAFALACGLGAALALALEGRKRQGVGALLDALFMLPNAIPSVSLGL-AI--LIAFHAGPLDLNG 141 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHCCCCCCC
T ss_conf 16899999999999999999999999999999862155548999999999899899999999-99--9999956844255
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999989998999999998458667899999621689999999969989986200479999999612899999
Q gi|254780172|r 248 KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISII 327 (386)
Q Consensus 248 ~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~I 327 (386)
.++..+++-..+.-+|.--.++++++++|+...|||+++|-|+||++|+|++|+..+-.+-+..-.|+.-+.|-+....+
T Consensus 142 t~~~liiah~~~~lP~~~~~v~a~l~~id~~leeAA~~LGAs~~~~f~~V~LPli~pgilag~~l~F~~S~~ef~~s~~l 221 (272)
T TIGR03255 142 SLAIVLFAHFALILAFCFRCAAAALAPELADIEEAAASLGAPPAMRLRHVLLPLLMPAIMAALALGFALSLGELGATLMI 221 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_conf 79999999999999999999999997379309999988699899999999879679999999999999999776153234
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999974101003551369999999999999999999999999998433
Q gi|254780172|r 328 NMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHK 382 (386)
Q Consensus 328 g~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~ 382 (386)
+-.|.....-.+.+..+ .+... + -...+.+..+++..+-....++.||+++
T Consensus 222 ~~~~~~TLpv~i~~~~~-~g~~~--~-aaAls~ili~~s~v~li~~~~~~~R~g~ 272 (272)
T TIGR03255 222 YPPGFATLPIAIFGATD-RGNIA--D-AAALSILLLAASLLALIAIAAIAKRLGQ 272 (272)
T ss_pred CCCCCEEHHHHHHHHHH-CCCCH--H-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 18997247999999987-67848--8-9999999999999999999999976389
No 34
>PRK10952 glycine betaine transporter membrane protein; Provisional
Probab=99.51 E-value=5e-11 Score=85.05 Aligned_cols=237 Identities=14% Similarity=0.200 Sum_probs=148.3
Q ss_pred HCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 14305689999999999974000111233346899999889885133335741111110024787799999999999875
Q gi|254780172|r 115 QRWRPILVFLTGSILLTPMLIPSFPRKFLNSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGLLVTLVISFFGIIISMPL 194 (386)
Q Consensus 115 e~WRv~la~ill~vll~~~l~~~~~~k~~~~l~~~~~~pil~~~Ll~gg~gl~~V~t~~~gGl~~Tl~l~~~~~~~~~~l 194 (386)
...-|+..++..+.++++.+. .++. .+. ..+++.++ +. .+.|.--..|+.+..++..+++.+
T Consensus 101 L~~~P~~~~i~~~~~law~~~----g~~l-a~~-----t~~~l~~I-~~-------~G~W~~aM~TLalvlvav~~~~ii 162 (354)
T PRK10952 101 LLGMPAPVAIIVFALIAWQIS----GVGM-GVA-----TLISLIAI-GA-------IGAWSQAMVTLALVLTALLFCIVI 162 (354)
T ss_pred HCCCCHHHHHHHHHHHHHHHC----CHHH-HHH-----HHHHHHHH-HH-------HCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 802988999999999999980----4799-999-----99999999-99-------663299999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67754441278688999789888876147228999999997664155887738799999999999899989999999984
Q gi|254780172|r 195 GILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQS 274 (386)
Q Consensus 195 G~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~s 274 (386)
|+.++..- ++++-++...+-..+++.-+|-.+ |++|...--|+. -..++++..+|.-.-+...-.-|++.
T Consensus 163 GiplGI~~-ars~r~~~il~PiLD~mQT~P~FV------YLiP~vmlFGiG---~vpaviAtviyAlpP~iR~T~lGir~ 232 (354)
T PRK10952 163 GLPLGIWL-ARSPRAAKIIRPLLDAMQTTPAFV------YLVPIVMLFGIG---NVPGVVVTIIFALPPIIRLTILGINQ 232 (354)
T ss_pred HHHHHHHH-HCCHHHHHHHHHHHHHHHCCHHHH------HHHHHHHHHCCC---CHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_conf 99999999-746999999999998731130799------999999992797---14599999999735899999999960
Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 58667899999621689999999969989986200479999999612899999999999999997410100355136999
Q gi|254780172|r 275 ISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTG 354 (386)
Q Consensus 275 vp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~ 354 (386)
||+.-.|||++.|+|++|.+++|-+|-|++.++-++-...+.-+--..+++.||..++=..--...++.+ ....
T Consensus 233 Vp~~viEAa~~~G~T~~Q~L~kVeLPlA~P~ImaGvNQtimlaLsMvVIAa~IGagGLG~~Vl~gi~~~d---~G~g--- 306 (354)
T PRK10952 233 VPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLD---MGLA--- 306 (354)
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC---HHHH---
T ss_conf 8888999999849998889898336024999999999999999999999999578866189999986224---3689---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCC
Q ss_conf 9999999999999999999999998433-7899
Q gi|254780172|r 355 LIFIGFVFWIFCFSISLYSVFIEKTLHK-GSKK 386 (386)
Q Consensus 355 y~~~a~iY~ii~~~ls~~~~~lE~rl~~-~~rR 386 (386)
+..++.--++...+.|+++.+-|+-.+ ++||
T Consensus 307 -l~aGl~IVlLAIiLDRiTqa~g~~~r~~~~~~ 338 (354)
T PRK10952 307 -TVGGVGIVILAIILDRLTQAVGRDSRSRGNRR 338 (354)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf -99999999999999998898562000268861
No 35
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
Probab=99.51 E-value=2.1e-11 Score=87.29 Aligned_cols=187 Identities=17% Similarity=0.282 Sum_probs=139.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 00247877999999999998756775444127868899978988887614722899999999766415588773879999
Q gi|254780172|r 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRA 252 (386)
Q Consensus 173 ~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~~a 252 (386)
.+..+.+++.-..++++.|.|+|+++.-- +-++.......++++-+|-+.++- ...|.+ |+.. .-+
T Consensus 28 ~~~Hl~l~~~a~~~a~~igVplGIl~~r~-----~~~~~~v~~v~nv~qTiPslAlla---llipv~---GiG~---~PA 93 (221)
T COG1174 28 TLQHLLLVLLAVLIAILIGVPLGILVTRS-----RRLAGLVLGVANVLQTIPSLALLA---LLIPVL---GIGL---TPA 93 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCHHHHHHH---HHHHHH---CCCC---CHH
T ss_conf 99999999999999999997889998734-----888889999999986160899999---999985---6886---389
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 99999998999899999999845866789999962168999999996998998620047999999961289999999---
Q gi|254780172|r 253 LLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM--- 329 (386)
Q Consensus 253 ~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~--- 329 (386)
++++.+|+=--+-+..-.|+++||+.-.|||+++|||+||.+++|.+|-|+.+++-++=...+..+--.++++.||-
T Consensus 94 iiAL~lYsLLPIvrNT~~GL~~V~~~v~EAa~gmGMT~~Q~L~~VelPlAlPvIlaGIR~a~V~~ig~Atiaa~IGAGGL 173 (221)
T COG1174 94 IIALFLYSLLPIVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVELPLALPVILAGIRTAVVINIGTATIAALIGAGGL 173 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999719999999998149877899988659987879897412001899986489999999999999999827744
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999741010035513699999999999999999999999999984337
Q gi|254780172|r 330 FDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKG 383 (386)
Q Consensus 330 ~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~ 383 (386)
.|+...+-... |+ .. .+.-++.--++.......-+++||++.+.
T Consensus 174 G~~I~~Gl~~~-n~-----~~----il~Gai~valLAi~~d~ll~~~e~~l~~~ 217 (221)
T COG1174 174 GDLIFRGLNLN-NT-----AL----ILAGAIPVALLAILADVLLGLLERALTPK 217 (221)
T ss_pred HHHHHHHHCCC-CH-----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 28998204016-67-----99----99969999999999999999999983401
No 36
>PRK09433 thiP thiamine transporter membrane protein; Reviewed
Probab=99.51 E-value=3.3e-11 Score=86.11 Aligned_cols=207 Identities=19% Similarity=0.233 Sum_probs=132.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHH-------
Q ss_conf 1111002478779999999999987567754441-2786889997898888761472289999999976-641-------
Q gi|254780172|r 169 VETSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVTVLFMASIML-PLF------- 239 (386)
Q Consensus 169 V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~l-p~~------- 239 (386)
-++..|.-+..|+..++.+.+++..+|+.+|..- +.+.|--|.+. ..-..|+++=-+...+.+ -.+
T Consensus 48 ~d~~~~~~~~~t~~~a~~st~ls~~lg~~~A~~l~r~~f~gr~~l~-----~l~~lp~~~P~~v~a~~~~~~~g~~G~l~ 122 (536)
T PRK09433 48 QDSYLWHVVRFSFWQAFLSALLSVLLAIPLARALYRRRFPGRGLLL-----RLCAMTLVLPVLVAVFGLLSVYGRSGWLA 122 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 6888999999999999999999999999999999955873499999-----99999987699999999999982164499
Q ss_pred -------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf -------5588773879999999999989998999999998458667899999621689999999969989986200479
Q gi|254780172|r 240 -------LPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVN 312 (386)
Q Consensus 240 -------lp~g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n 312 (386)
.+...++..+.-.+++.++++-.|..-.++++++++|..|.|||+++|.++||++|+|++|+..+...++..=
T Consensus 123 ~~l~~~g~~~~~~iyg~~gil~a~~~~~~P~~~~~~~~~l~~i~~~~~e~A~~LG~~~~~~f~~v~lP~~~pai~~~~~L 202 (536)
T PRK09433 123 SLLQSLGLEWPFSIYGLQGILLAHVFFNLPLATRLLLQSLESIPSEQRQLAAQLGMRGWQFFRLVEWPWLRRQLPPVAAL 202 (536)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998288778640129999999999999999999999998199999999987598986888863489887889999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999612899999999-99999999741010035513699999999999999999999999999984337
Q gi|254780172|r 313 TFIGLFKDSSLISIINMF-DLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKG 383 (386)
Q Consensus 313 ~~i~l~KdTsL~~~Ig~~-el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~ 383 (386)
.|+-.+-|=+.+.++|-. ..+.....+.+. +.+.+ ....=...+++=.++|..+-...++.++|.+.+
T Consensus 203 VF~~~~~sF~~vl~LGGgp~~~Tlev~IYq~--~~~~~-D~~~Aa~La~i~l~i~~~l~~l~~~~~~~~~~~ 271 (536)
T PRK09433 203 IFMLCFTSFATVLTLGGGPKATTIELAIYQA--LSFDF-DLARAALLALLQLVLCLLLVLLSQRLSKAIAVG 271 (536)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999888999955886403689999999--98647-999999999999999999999999982242002
No 37
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein.
Probab=99.47 E-value=2.7e-11 Score=86.65 Aligned_cols=208 Identities=12% Similarity=0.080 Sum_probs=139.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 1111002478779999999999987567754441-278-68899978988887614722899999999766415588773
Q gi|254780172|r 169 VETSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSN-IPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDV 246 (386)
Q Consensus 169 V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~-~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~ 246 (386)
.+.+.|..+..|+.+++.+.+++..+|+..|..- ++| .+.++........+-..+|=+++=. ++.. .|...+..+
T Consensus 326 ~~~~~~~a~~nSl~la~~aa~i~~~l~~~~ay~i~r~r~~~~~~~~l~~l~~lp~aiPgiVlal-g~i~--~f~~~~~~l 402 (546)
T TIGR03262 326 MDGGGWEAYKNSLRLAATTALIGTILVFGGAYLIEKTRGFGLLRGVLRFLAILPMAVPGLVLGL-GYIF--FFNAPTNPL 402 (546)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHCCCCHH
T ss_conf 0356899999999999999999999999999999982141267999999998535168999999-9999--985222036
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf ----8799999999999899989999999984586678999996216899999999699899862004799999996128
Q gi|254780172|r 247 ----DKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSS 322 (386)
Q Consensus 247 ----~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTs 322 (386)
+..+--+++.....-+|....++++++.+|+...|||+.+|-|+++++++|++|+..+..+-+..-.|+..+||-+
T Consensus 403 ~~LygT~~iLilay~vr~lp~~~~~i~a~l~qI~~~leeAA~~lGas~~~~~~rI~lPLl~p~ilag~~lvFi~~m~El~ 482 (546)
T TIGR03262 403 NGLYGTMALLVLCTVVHFYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVS 482 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHEHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78888999999999999999989999999874895099999875979666725320780289999999999999998768
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999741010035513699999999999999999999999999984337
Q gi|254780172|r 323 LISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKG 383 (386)
Q Consensus 323 L~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~ 383 (386)
......-+|.-..+..+.+..+ .+.+.... ..+++-.+++.....+..+++||..+.
T Consensus 483 ~tllL~~~~~~tl~~~i~~~~~-~g~~~~Aa---a~s~ilvli~~i~~~l~~~~~rr~~~r 539 (546)
T TIGR03262 483 AVVFLYSPDTKLASVAILNMDD-AGDIAPAA---AMATLIVLTSAVAKLLFALASRRLLRR 539 (546)
T ss_pred EEEEECCCCCEEHHHHHHHHHH-CCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7878739998029999999865-87758899---999999999999999999999884468
No 38
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=9.9e-11 Score=83.29 Aligned_cols=193 Identities=19% Similarity=0.255 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 10024787799999999999875677544412786889997898888761472289999999976641558877387999
Q gi|254780172|r 172 SLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLR 251 (386)
Q Consensus 172 ~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~~ 251 (386)
.+|.....|+.-...|..+|..+|+.+++.-- .++.++....-++++.|.+|.+.++=+....+ |....+ ..
T Consensus 58 ~L~~~~~~Sl~rv~~Gf~la~~~gi~lgil~g-~~~~~~~~l~P~i~~l~~iP~lA~~Pl~ilwf------G~g~~s-~i 129 (258)
T COG0600 58 ELFQHLLASLLRVLLGFALAAVLGIPLGILMG-LSRLLERLLDPLVQVLRPIPPLALAPLAILWF------GIGETS-KI 129 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------HCCCCH-HH
T ss_conf 59999999999999999999999999999998-57999999969999993177799999999999------079611-99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999899989999999984586678999996216899999999699899862004799999996128999999999
Q gi|254780172|r 252 ALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFD 331 (386)
Q Consensus 252 a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~e 331 (386)
++..++.|.- +.-....|++++|+.+.|+++.+|.|++|.+++|++|.|+...+-++--..- .+...+| +.|
T Consensus 130 ~i~~~~~ffp--i~int~~Gvr~v~~~~~~~ar~lgas~~~~l~~v~lP~AlP~i~tgLRia~g-----~aw~~~V-vaE 201 (258)
T COG0600 130 VIAVLGAFFP--ILINTLDGVRSVDPDLLELARTLGASRWQILRKVILPAALPYIFTGLRIAIG-----LAWIGLV-VAE 201 (258)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH-----HHHHHHH-HHH
T ss_conf 9999999999--9999999987189999999998098977787762053007899999999999-----9999999-999
Q ss_pred HHHHH----HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999----997410100355136999999999999999999999999999843378
Q gi|254780172|r 332 LLGIV----RVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGS 384 (386)
Q Consensus 332 l~~~~----~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~ 384 (386)
+.+.. ..+...-+ +...+.-...-+++-++...+.+..+.+|||+-+-+
T Consensus 202 ~l~a~~GLG~~i~~a~~----~~~~~~v~a~i~~i~~lgll~d~~v~~~er~~~~w~ 254 (258)
T COG0600 202 LLGASSGLGYLILDARN----NLQTDLVFAAILVIALLGLLLDRLVRLLERRLLRWR 254 (258)
T ss_pred HHHCCCCHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 97056668799999998----516789999999999999999999999999985212
No 39
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=6e-11 Score=84.57 Aligned_cols=202 Identities=21% Similarity=0.274 Sum_probs=136.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHCCCC--
Q ss_conf 1111100247877999999999998756775444-12786889997898888761472289999999976-6415588--
Q gi|254780172|r 168 IVETSLWGGLLVTLVISFFGIIISMPLGILLALG-RNSNIPVLRYACITFIELFRGVPLVTVLFMASIML-PLFLPDT-- 243 (386)
Q Consensus 168 ~V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~-r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~l-p~~lp~g-- 243 (386)
..++..|.=+..|+.+++.+.+++.++|+.+|.. -+++.|-=|.....++ .|+.+=-|...+.. -.+-|.|
T Consensus 49 l~~~~~~~~l~nTl~la~~~~~ls~~lG~~~A~l~~r~~fpGr~~l~~l~~-----lPl~iP~~V~a~~~~~l~G~~G~~ 123 (540)
T COG1178 49 LSDPYLWRVLANTLILAVLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLA-----LPLVIPPFVVALAWISLFGPSGPL 123 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 612389999999999999999999999999999999862771799999999-----998887999999999997676349
Q ss_pred --------C--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf --------7--7-3879999999999989998999999998458667899999621689999999969989986200479
Q gi|254780172|r 244 --------W--D-VDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVN 312 (386)
Q Consensus 244 --------~--~-~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n 312 (386)
. . +-.+.-.+++.++++-.|.--+++++++++|+.+.|||+.+|+++||++|+|++|++.+....+..=
T Consensus 124 ~~l~~~~G~~~~~iyg~~Giil~~~~~~~P~~~l~~~~al~~i~~~~~EaAr~LGa~~~~~F~~V~lPllrPai~~~~~L 203 (540)
T COG1178 124 AALLELLGFESPSIYGLGGILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLGASRWQVFRKVTLPLLRPAIAAGALL 203 (540)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998744687664668999999999982599999999998389469999987599832288886788777899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999612899999999999999997410100355136999999999999999999999999999
Q gi|254780172|r 313 TFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEK 378 (386)
Q Consensus 313 ~~i~l~KdTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~ 378 (386)
.|+..+-|=+...++|.. ...-...+.++-. +.+..-.. ...+++=..+|..+-...++.++
T Consensus 204 vf~~~l~dFg~p~~LG~~-~~Tl~t~IY~~~~--~~~~~~~A-a~la~lll~~~~~ll~~~~~~~~ 265 (540)
T COG1178 204 VFMLCLADFGTPLILGGG-YTTLETAIYQAIM--SSFDLARA-ALLALLLLLITAALLLLERRLRR 265 (540)
T ss_pred HHHHHHHHHHHHHHHCCC-CCEEHHHHHHHHH--HCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999864469997698-7332999999998--45882569-99999999999999999999850
No 40
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein.
Probab=99.42 E-value=2.6e-10 Score=80.75 Aligned_cols=154 Identities=19% Similarity=0.238 Sum_probs=110.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHCCC-----
Q ss_conf 111002478779999999999987567754441-2786889997898888761472289999999976-641558-----
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVTVLFMASIML-PLFLPD----- 242 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~l-p~~lp~----- 242 (386)
+...|..+..|+.+++.+.++++++|+.+|... +.+.|--|.+....+ .|+++=-|...+.. ..+-+.
T Consensus 49 ~~~~~~~l~nTl~l~~~~~~~~~~lg~~~A~~~~r~~~~gr~~~~~~~~-----lPl~~P~~v~a~~~~~l~~~~G~~~~ 123 (546)
T TIGR03262 49 TPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVAL-----LPLLAPSLLPAISLIYLFGNQGLLKG 123 (546)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 9689999999999999999999999999999998055646999999999-----99999999999999999831637899
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf ---87738799999999999899989999999984586678999996216899999999699899862004799999996
Q gi|254780172|r 243 ---TWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFK 319 (386)
Q Consensus 243 ---g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~K 319 (386)
+.++..++..+++.+++.-.|+--.++++++++|+.+.|||+.+|-+++|++++|++|+..+...-+..=.++.-+-
T Consensus 124 ~l~~~~iy~~~gii~~~~~~~~P~~~l~~~~al~~~d~~l~eaA~~lGa~~~~~f~~i~lPl~~P~i~~~~lLvf~~~l~ 203 (546)
T TIGR03262 124 LLGGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVIT 203 (546)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98637154799999999999999999999999971998999999872999889999944786579999999999999975
Q ss_pred HHHHHHHHH
Q ss_conf 128999999
Q gi|254780172|r 320 DSSLISIIN 328 (386)
Q Consensus 320 dTsL~~~Ig 328 (386)
|=....++|
T Consensus 204 ~Fg~p~ilG 212 (546)
T TIGR03262 204 DFGVPKVIG 212 (546)
T ss_pred HHHHHHHHC
T ss_conf 332588843
No 41
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=99.42 E-value=8e-11 Score=83.85 Aligned_cols=200 Identities=18% Similarity=0.204 Sum_probs=127.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHCCCCCCCCHH
Q ss_conf 110024787799999999999875677544412786889997898888761472289999-9999766415588773879
Q gi|254780172|r 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLF-MASIMLPLFLPDTWDVDKL 249 (386)
Q Consensus 171 t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf-~~~~~lp~~lp~g~~~~~~ 249 (386)
.+.+..+..++.+++.+...+.++|+..|++-.-..+..|... +..=..|+++=-- .+.-++-+|...|. -..+
T Consensus 61 ~~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~----~~l~~~PlvvP~Iv~gi~ll~~f~~~~~-~~~~ 135 (267)
T COG1177 61 PRLLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLL----EGLILLPLVVPDIVTGIALLLLFAALGL-PGGF 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH----HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CCCH
T ss_conf 4899999999999999999999999999999997040268999----9999742415099999999999998688-7529
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998999899999999845866789999962168999999996998998620047999999961289999999
Q gi|254780172|r 250 LRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329 (386)
Q Consensus 250 ~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~ 329 (386)
+..+++-+.+.-+|+.-++++.++++|+...|||+.||-|+||++|+|+||....-++-+..=-|..-+-|-...+.++=
T Consensus 136 ~~ivlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~~g 215 (267)
T COG1177 136 WTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITFFLAG 215 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
T ss_conf 99999999998668999999999738967999998769988889899769752799999999999999867786311328
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974101003551369999999999999999999999999998
Q gi|254780172|r 330 FDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKT 379 (386)
Q Consensus 330 ~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~r 379 (386)
++...--..+.++.+ ....-| --.++.++.+++..+.....++-||
T Consensus 216 p~~~TLP~~i~s~~r---~~~~P~-i~Alstll~~~~~ll~~~~~~~~~~ 261 (267)
T COG1177 216 PGFTTLPLQIYSMIR---RGITPE-INALSTLLLLLSLLLILLASRLLRR 261 (267)
T ss_pred CCCCCHHHHHHHHHH---CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998721899999865---589819-9999999999999999999998643
No 42
>COG1175 UgpA ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.2e-10 Score=82.77 Aligned_cols=209 Identities=19% Similarity=0.258 Sum_probs=138.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-------HHH---
Q ss_conf 1110024787799999999999875677544412786889997898888761472289999999976-------641---
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIML-------PLF--- 239 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~l-------p~~--- 239 (386)
++..|..+..|+..++.++.+.+.+|+.+|+.-.++.+.-+..-..+. +=..+|.++.-..-..++ +..
T Consensus 63 d~~f~~al~nT~~~~~~~v~~~~~lgl~lAlll~~~~~g~~~~r~~~~-lP~~~~~vv~~~iw~~l~~~~~G~~n~~l~~ 141 (295)
T COG1175 63 DPTFWNALKNTLVFTVISVPLQLVLGLLLALLLNRKLRGRGFFRTLFF-LPWAISSVVAGLIWKWLFNPSFGLLNSLLLL 141 (295)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 847999999999999999999999999999998470447999999999-9989999999999999988763589999998
Q ss_pred --CCC--CCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf --558--87738---79999999999989998999999998458667899999621689999999969989986200479
Q gi|254780172|r 240 --LPD--TWDVD---KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVN 312 (386)
Q Consensus 240 --lp~--g~~~~---~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n 312 (386)
+++ .+--| .+.+.+++-.--...|..=++=+|+|+|||.++|||+-=|-++||++++|.+|+-.+.....++-
T Consensus 142 ~gl~~~~~wl~~~~~A~~~iii~~vW~~~~f~mli~lAgLq~Ip~~lyEAA~iDGA~~~q~f~~ItlP~l~p~i~~~~i~ 221 (295)
T COG1175 142 LGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIPKELYEAARIDGASPWQRFRKITLPLLRPVIFFVLIL 221 (295)
T ss_pred HCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 05755563413906999999999999998499999999995699999999958999643654541044102799999999
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999961289999999------9999999997410100355136999999999999999999999999999843378
Q gi|254780172|r 313 TFIGLFKDSSLISIINM------FDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGS 384 (386)
Q Consensus 313 ~~i~l~KdTsL~~~Ig~------~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~ 384 (386)
+.|..+|.=.++++..- .|.+.. -+..+. +... ..-.=-..+++.++++..++....+..+|..+++
T Consensus 222 ~~i~~~~~Fd~i~~lT~GGP~~~T~~l~~--~~y~~a-f~~~--~~G~asA~avil~~i~~~~~~~~~~~~~~~~~~~ 294 (295)
T COG1175 222 RTIFAFQVFDLIYLLTGGGPGNATTTLAY--YIYRTA-FGGL--DFGYAAAIAVILFLIVLILTVVQLRLLRRKERRV 294 (295)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHH-HHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999997369999807999622559999--999998-7006--6648999999999999999999999987435315
No 43
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=99.40 E-value=2.5e-12 Score=92.92 Aligned_cols=204 Identities=19% Similarity=0.250 Sum_probs=135.9
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----HCCCCC
Q ss_conf 2478----779999999999987567754--441278688999789888876147228999999997664----155887
Q gi|254780172|r 175 GGLL----VTLVISFFGIIISMPLGILLA--LGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPL----FLPDTW 244 (386)
Q Consensus 175 gGl~----~Tl~l~~~~~~~~~~lG~lla--l~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~----~lp~g~ 244 (386)
||.. -|+.+.+.++++|+|+|+.-| +...+|...+....+..+|..=|+|-|+.=.|+|-.+.. .+ +.
T Consensus 57 GGi~~AivGT~~~~~~~~~ia~PlGi~~aiYL~EYa~~~~~~~~ir~~~~~LaG~PSIv~GLFg~~~fv~~~~i~l--~~ 134 (302)
T TIGR00974 57 GGIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYAKEGRFTKFIRFAVDVLAGVPSIVVGLFGYALFVKTLGIYL--GG 134 (302)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_conf 5336779999999999999999999998887553067894005687888875211699999999999997768645--22
Q ss_pred CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 738799999-9999998999899999999845866789999962168999999996998998620047999999961289
Q gi|254780172|r 245 DVDKLLRAL-LGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSL 323 (386)
Q Consensus 245 ~~~~~~~a~-i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL 323 (386)
..+ ..++- ++|++--=..+.-.=+-++++||++++|||.|||-++|||.++|+||-|++=++=+..=-.--..=+|+=
T Consensus 135 ~~S-~laG~~LaLa~L~LP~iirtTeEal~~VP~~~Reas~ALGa~Kw~TI~~~vLP~A~~GI~TG~iL~iaR~~GETAP 213 (302)
T TIGR00974 135 GFS-ALAGALLALAILILPVIIRTTEEALKAVPKDLREASLALGATKWQTILKIVLPAALPGILTGIILSIARAAGETAP 213 (302)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 067-7879999999999999999989999724788889999726002113322441310368999999999999998999
Q ss_pred H-HH-HHHHH--------------------HHHHHHH-------HHHHHHCCCCCHH--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-99-99999--------------------9999999-------7410100355136--999999999999999999999
Q gi|254780172|r 324 I-SI-INMFD--------------------LLGIVRV-------NFSESTWISSVTP--TTGLIFIGFVFWIFCFSISLY 372 (386)
Q Consensus 324 ~-~~-Ig~~e--------------------l~~~~~~-------~~~~~~~~~~~~~--~e~y~~~a~iY~ii~~~ls~~ 372 (386)
. ++ .|..+ +...... ..++. -+..+.+ -+.-..++++=.++...++..
T Consensus 214 Ll~TA~~~~~~~~~~~~~N~~~~~p~~~d~l~~~~~~L~~~iY~~~~~~-~~~~~~~~~~~~a~~aalvL~~~vl~~N~~ 292 (302)
T TIGR00974 214 LLFTAGGSSSFLLGNSVLNDLPKAPLGEDLLLSPPAALPVLIYNLASEL-ANAPYSEARNELAWAAALVLIVLVLLLNLI 292 (302)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998877641035667776777775422576413688888764014-678842688899999999999999999999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999998433
Q gi|254780172|r 373 SVFIEKTLHK 382 (386)
Q Consensus 373 ~~~lE~rl~~ 382 (386)
+|.+-||.+.
T Consensus 293 a~~~~~~~~~ 302 (302)
T TIGR00974 293 ARLLRRRFKK 302 (302)
T ss_pred HHHHHHHHCC
T ss_conf 9999975249
No 44
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=99.40 E-value=8.5e-11 Score=83.68 Aligned_cols=206 Identities=17% Similarity=0.168 Sum_probs=124.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH------HHC--
Q ss_conf 111002478779999999999987567754441-27868899978988887614722899999999766------415--
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVTVLFMASIMLP------LFL-- 240 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp------~~l-- 240 (386)
++..|.-+..|+.+++.+.++++.+|..+|..- +++.+ .|.+....+-+=--+|.++..|--...+. .++
T Consensus 92 d~~y~~a~~nSL~iA~~sT~i~lliG~P~Ay~iar~~~~-~r~~l~~lvilP~~~s~lVr~~aw~~iL~~~G~ln~~L~~ 170 (317)
T PRK10683 92 DPLYFDAYLQSLQVAAISTICCLLIGYPLAWAVAHSKPS-TRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLW 170 (317)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 978999999999999999999999999999999938861-7899999999997067999999999997314348789999
Q ss_pred ----CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf ----588-773879999999999989998999999998458667899999621689999999969989986200479999
Q gi|254780172|r 241 ----PDT-WDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFI 315 (386)
Q Consensus 241 ----p~g-~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i 315 (386)
.+. .-+......++++...+-.|+.=.+.++++++|+...|||+.+|-|++|++++|++|+...-++-+..=.|+
T Consensus 171 lGli~~pl~ll~t~~aViig~v~~~lPfmvL~l~a~L~~id~~L~EAA~~LGAs~~~~F~~VtLPL~~PGIiag~lLvFi 250 (317)
T PRK10683 171 LGVIDQPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFI 250 (317)
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEEECCCHHHHHHHHHHHHH
T ss_conf 60446763225645899999999999999999999998589089999987699865540023206218999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9996128999999999999999974101003551369999999999999999999999999998
Q gi|254780172|r 316 GLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKT 379 (386)
Q Consensus 316 ~l~KdTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~r 379 (386)
..+.|=..-..+|=.+-...++.+.++-. .....+.- -.++++-+++......+-++.|+|
T Consensus 251 ~a~g~F~iP~lLGG~~~~~i~~~i~~~f~-~~~dwp~a--aAlavvLl~i~iv~~~~~~r~~~k 311 (317)
T PRK10683 251 PAVGEFVIPELLGGPDSIMIGRVLWQEFF-NNRDWPVA--SAVAIIMLLLLIVPIMWFHKHQQK 311 (317)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHH-HHCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99888776866429985629999999998-74680589--999999999999999999999887
No 45
>PRK10561 glycerol-3-phosphate transporter permease; Provisional
Probab=99.36 E-value=3.9e-10 Score=79.71 Aligned_cols=203 Identities=14% Similarity=0.163 Sum_probs=115.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-H------HHCC-
Q ss_conf 1110024787799999999999875677544412786889997898888761472289999999976-6------4155-
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIML-P------LFLP- 241 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~l-p------~~lp- 241 (386)
++..|..+..|+..++.+.+.++++|+.+|+.-..+.|- |.+-+...-+=.-+|.++.-+.-..++ | .++.
T Consensus 50 d~~f~~~~~ntl~~~~~~~~~~~~l~l~lA~ll~~~~~~-~~~~r~~~~lP~~i~~vv~~~~w~~l~~~~~G~~n~~l~~ 128 (280)
T PRK10561 50 DSYYLDSFWTTIKFSALVTVSGLLVSLFFAALVDYVVRG-SRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAE 128 (280)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 977999999999999999999999999999998610207-8999999998755319999999999969871089999986
Q ss_pred CCCCC----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 88773----8---7999999999998999899999999845866789999962168999999996998998620047999
Q gi|254780172|r 242 DTWDV----D---KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTF 314 (386)
Q Consensus 242 ~g~~~----~---~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~ 314 (386)
-|.+. | .+...+++-.....+|..=++-+|+|+||+.++|||+--|-|+||++|+|++|+.-+...-.++-+.
T Consensus 129 ~g~~~~~~~~~~~a~~~vi~~~vW~~~g~~~li~lagL~~Ip~~l~EAA~iDGA~~~q~f~~ItlPll~p~~~~~~i~~~ 208 (280)
T PRK10561 129 FGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFYAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNL 208 (280)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEEEHHHHHHHHHHHHHHHH
T ss_conf 57777544674899999999999999899999999998579977999999769977523312304610599999999999
Q ss_pred HHH-HHHHHHHHHHH------HHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 999-96128999999------99999--99999741010035513699999999999999999999999-999984
Q gi|254780172|r 315 IGL-FKDSSLISIIN------MFDLL--GIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSV-FIEKTL 380 (386)
Q Consensus 315 i~l-~KdTsL~~~Ig------~~el~--~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~-~lE~rl 380 (386)
+.- +|.-.+..... -.|.+ +.-+....+.+ .--=...+++.++++..++.+.. ..|||.
T Consensus 209 i~~~~~~f~~i~~~t~GGP~~~t~~l~~~iy~~~f~~~~-------~g~asA~svil~~i~~~~~~i~~r~~~rkv 277 (280)
T PRK10561 209 VYAFFDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLD-------LSSSAAQSVVLMFLVIVLTVVQFRYVESKV 277 (280)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf 999996568886436888852889999999999987599-------619999999999999999999999983211
No 46
>CHL00187 cysT sulfate transport protein; Provisional
Probab=99.35 E-value=8.6e-11 Score=83.66 Aligned_cols=171 Identities=20% Similarity=0.213 Sum_probs=110.6
Q ss_pred HHHHHHHHHCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 998898851333357411-----11110024787799999999999875677544-412786889997898888761472
Q gi|254780172|r 151 LFPIFSFFVLYGGLGLSI-----VETSLWGGLLVTLVISFFGIIISMPLGILLAL-GRNSNIPVLRYACITFIELFRGVP 224 (386)
Q Consensus 151 ~~pil~~~Ll~gg~gl~~-----V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal-~r~s~~~~l~~~~~~~ie~~Rg~P 224 (386)
+.|++..+........+. -++..+..+..|+.++..+.+++..+|+.+|. ..+.+.|- |......+.+=-.+|
T Consensus 24 i~Pl~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~Sl~~s~~~t~i~~~ig~~~A~~l~r~~~~g-k~~~~~l~~lP~~iP 102 (235)
T CHL00187 24 ILPILALLIKASQQPWSDFLQIATEPIALSAYSLTVSMALIAALINGIFGLLIAWVLVRYNFPG-KRFLDAAVDLPFALP 102 (235)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHH
T ss_conf 9999999999961789999999859999999999999999999999999999999999843761-899999999999978
Q ss_pred HHHHHHHHHHHH------HHHCC-CCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 289999999976------64155-8877-387999999999998999899999999845866789999962168999999
Q gi|254780172|r 225 LVTVLFMASIML------PLFLP-DTWD-VDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRL 296 (386)
Q Consensus 225 li~~lf~~~~~l------p~~lp-~g~~-~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~ 296 (386)
-++.-+-...++ ..++. -|.+ .......+++.+...-.|+--.++++++++|+...|||+++|-|+||++++
T Consensus 103 ~~v~a~~~~~~f~~~G~~~~~l~~~~~~~~~~~~giii~~~~~~~P~~~~~~~~~l~~i~~~leEAA~~lGAs~~~~f~~ 182 (235)
T CHL00187 103 TSVAGLTLATVYGDNGWIGHILSSLGIKIVFTKLGVLLAMIFVSLPFVVRTIQPVLQEIEKELEEAAWSLGASPWETFWK 182 (235)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999999644661768999707651230999999999988799999899999860299999998739995041131
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9969989986200479999999612899999999999
Q gi|254780172|r 297 IIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLL 333 (386)
Q Consensus 297 IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~el~ 333 (386)
|++|+..+-++-+. .++++-.+.|.-
T Consensus 183 I~lPll~p~i~a~~-----------~l~f~~~~~eFg 208 (235)
T CHL00187 183 VIFPPLIPALLTGL-----------ALTFSRAIGEYG 208 (235)
T ss_pred EEHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_conf 21784689999999-----------999999999987
No 47
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2e-11 Score=87.39 Aligned_cols=220 Identities=18% Similarity=0.222 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHCCCCCCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999889885133335741-----1111100247877999999999998756775444127868899978988887614
Q gi|254780172|r 148 LFGLFPIFSFFVLYGGLGLS-----IVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRG 222 (386)
Q Consensus 148 ~~~~~pil~~~Ll~gg~gl~-----~V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg 222 (386)
+....|+...+...+..|.. .-+.+.++-+.+|+..+.++.++++++|+..|.--..+.-.-|.+....+|+-=.
T Consensus 25 l~~llPl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~S~~~a~~atl~~~vfg~~~a~vL~R~~fpgk~lvdaivDlP~a 104 (274)
T COG0555 25 LILLLPLSALVTKSSSLGWAGFWSALTSPRVLAALKLTLLTAFAATLLNLVFGLPLAWVLVRYDFPGKRLVDALVDLPFA 104 (274)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
T ss_conf 99999999999974335689999996489899999999999999999999999899898540358848999999627613
Q ss_pred CCHHHHHH--HHHHH----HHHHC-CCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH
Q ss_conf 72289999--99997----66415-588773-879999999999989998999999998458667899999621689999
Q gi|254780172|r 223 VPLVTVLF--MASIM----LPLFL-PDTWDV-DKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKM 294 (386)
Q Consensus 223 ~Pli~~lf--~~~~~----lp~~l-p~g~~~-~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~ 294 (386)
.|-.+.=. ...|+ +..++ +.|+.+ +...-.++|+.+.+..|.-..+|++++++++.+.|||++||.|++|++
T Consensus 105 lP~~VaGiaLl~l~~~~g~~g~~~~~~gi~~~~t~~GVivA~~Fvs~Pf~vr~v~~~~~~id~~~EeaA~sLGas~~~tf 184 (274)
T COG0555 105 LPTAVAGIALLLLFGPNGLLGSLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGASPLQTF 184 (274)
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHCCCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEE
T ss_conf 75489999999996678740355412475676467899999999703368998899998556889999986489855111
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99996998998620047999999961289999999999----------------99999974101003551369999999
Q gi|254780172|r 295 RLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDL----------------LGIVRVNFSESTWISSVTPTTGLIFI 358 (386)
Q Consensus 295 ~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~el----------------~~~~~~~~~~~~~~~~~~~~e~y~~~ 358 (386)
++|++|-..+..+ +...+...=++.|. +... +..+ +..+ .++.=..+
T Consensus 185 ~~V~lP~l~pall-----------~G~~LsfaR~igEfGavl~iAgn~p~~t~~~pl~--Iy~~--~~~~--d~~~A~ai 247 (274)
T COG0555 185 RRVILPLLLPALL-----------AGFILSFARSIGEFGAVLIIAGNTPYKTETLPLL--IYTR--LESY--DLEAAAAI 247 (274)
T ss_pred EEEEHHHCHHHHH-----------HHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHH--HHHH--HHHC--CCHHHHHH
T ss_conf 4244641338999-----------9999999998245464999814777877303899--9999--9837--93579999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999843378
Q gi|254780172|r 359 GFVFWIFCFSISLYSVFIEKTLHKGS 384 (386)
Q Consensus 359 a~iY~ii~~~ls~~~~~lE~rl~~~~ 384 (386)
+++-.++++.+-...|.++.|.+|..
T Consensus 248 s~vll~iS~~~l~~~r~~~~~~~r~~ 273 (274)
T COG0555 248 SVVLLLISFILLLVIRLLQSRARRRE 273 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999987642057
No 48
>PRK10913 dipeptide transporter; Provisional
Probab=99.32 E-value=3e-10 Score=80.40 Aligned_cols=205 Identities=14% Similarity=0.180 Sum_probs=143.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 11002478779999999999987567754441278688999789888876147228999999997664155887738799
Q gi|254780172|r 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLL 250 (386)
Q Consensus 171 t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~ 250 (386)
+..+-|...|+.+++.+.++++.+|+++++..-..-..+.....-.+|++...|.+.+..... ..+ |. ...
T Consensus 92 srll~G~r~Sl~ial~~~~i~~~iG~~iG~iaGy~gG~vD~~i~r~~di~~aiP~lll~l~l~---~~~---g~---~~~ 162 (300)
T PRK10913 92 SRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLV---AIF---GP---SIG 162 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH---HCC---CC---CHH
T ss_conf 999999999999999999999999999999998038840788877766660688487768755---304---87---468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998999899999999845-866789999962168999999996998998620047999999961289999999
Q gi|254780172|r 251 RALLGVSAFASAYIAEVLRGGLQSI-SKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329 (386)
Q Consensus 251 ~a~i~l~l~~aAy~aEi~Rggl~sv-p~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~ 329 (386)
..++++++..-...|.++|+-..++ .+.-.|||+++|.|+++++++-|+|+.+...+-..+-++...+-.-+-.+.+|+
T Consensus 163 ~~~lal~~~~w~~~aR~vR~~vl~~~~~~yV~AAr~~G~s~~rIi~~hIlPnv~~~iiv~~~l~~~~aIl~ea~LsFLGl 242 (300)
T PRK10913 163 NAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGM 242 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999989999999999999986158999999849997478643342665889999999999999999999999247
Q ss_pred H-H--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9-9--9999999741010035513699999999999999999999999999984337899
Q gi|254780172|r 330 F-D--LLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGSKK 386 (386)
Q Consensus 330 ~-e--l~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~rR 386 (386)
. + --.=++++....++....- ...++-++...+....++.++..+++.++-.-||
T Consensus 243 G~~pp~~sWG~ml~~~~~~~~~~p--w~~~~Pg~~i~l~vl~~nllgdgLrdaldPrlrr 300 (300)
T PRK10913 243 GAQPPTPEWGTMLSDVLQFAQSAW--WVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300 (300)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 899998839999999999998483--9999999999999999999999999871910177
No 49
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.30 E-value=9.4e-10 Score=77.41 Aligned_cols=203 Identities=19% Similarity=0.243 Sum_probs=151.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 11111100247877999999999998756775444127868899978988887614722899999999766415588773
Q gi|254780172|r 167 SIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDV 246 (386)
Q Consensus 167 ~~V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~ 246 (386)
..+-+..+-|...++.+++.+..+++.+|+.+++.--+.-..+-.+..-.+|++-+.|-+.+.......+.
T Consensus 75 RDi~srli~G~r~SL~I~~~~~~~~~~iG~~lG~iaGy~gG~vD~ilmri~di~ls~P~lll~i~l~~~lg--------- 145 (289)
T COG1173 75 RDILSRLLYGARISLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMRITDIFLAFPSLLLAILLVAILG--------- 145 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC---------
T ss_conf 58999999999999999999999999999999999988076199999999999997659999999999977---------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 8799999999999899989999999984586-678999996216899999999699899862004799999996128999
Q gi|254780172|r 247 DKLLRALLGVSAFASAYIAEVLRGGLQSISK-GQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLIS 325 (386)
Q Consensus 247 ~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~-GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~ 325 (386)
..+...++++++.+-+..|.++||-..++-+ +..|||+++|.+.++.+++=++|+.+...+-..+.++-..+-.-|-.+
T Consensus 146 ~~~~~iiial~i~~W~~~AR~vR~~vl~~k~~eyV~AAr~~G~~~~~Ii~rhIlPn~~~~iiv~~~l~~~~aIl~ea~LS 225 (289)
T COG1173 146 PGLLNLILALALVGWPGYARIVRGQVLSLREREYVEAARALGASTLRIIFRHILPNVLPPLIVLATLDIGGAILAEAGLS 225 (289)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 24898999999994399999999999998776899999984999201249886230289999999999999999999999
Q ss_pred HHHHH---------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999---------9999999974101003551369999999999999999999999999998433789
Q gi|254780172|r 326 IINMF---------DLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGSK 385 (386)
Q Consensus 326 ~Ig~~---------el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~r 385 (386)
.+|+. .++..++.... ..+ -...++-++.-.++......++..+++.++...|
T Consensus 226 FLGLG~~pp~pswG~ml~~~~~~~~-----~~~--~w~~l~Pgl~i~l~vl~fnllgdgLrd~~dpr~~ 287 (289)
T COG1173 226 FLGLGVQPPTPSWGTMLAEGRNYLL-----TGA--WWLVLFPGLAILLTVLAFNLLGDGLRDALDPRLR 287 (289)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHH-----CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHC
T ss_conf 9068899899989999999999887-----048--5999998999999999999999889987480102
No 50
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional
Probab=99.29 E-value=9.1e-09 Score=71.50 Aligned_cols=204 Identities=11% Similarity=0.105 Sum_probs=144.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 11002478779999999999987567754441278688999789888876147228999999997664155887738799
Q gi|254780172|r 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLL 250 (386)
Q Consensus 171 t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~ 250 (386)
+..+-|...|+.+++.+.+++..+|+++++.--..-..+..+..-.+|++...|-+.+...... .+ |. ...
T Consensus 87 srll~G~r~sL~i~l~~~~i~~~iG~~lG~~aGy~gG~~D~il~ri~Dv~~aiP~lll~i~l~~---~~---g~---~~~ 157 (296)
T PRK09881 87 SRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAA---AL---GP---SLF 157 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHH---HH---CC---CHH
T ss_conf 9988879999999999999999999999998888176076655677763015860577788876---51---67---516
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998999899999999845-866789999962168999999996998998620047999999961289999999
Q gi|254780172|r 251 RALLGVSAFASAYIAEVLRGGLQSI-SKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329 (386)
Q Consensus 251 ~a~i~l~l~~aAy~aEi~Rggl~sv-p~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~ 329 (386)
..++++++..-...+.++|+-..++ .+.-.|||+++|.|+++.+++-++|..+...+-..+.++-..+-.-+-.+.+|+
T Consensus 158 ~~il~i~l~~w~~~aR~vR~~~l~i~~~~yV~AAr~~G~s~~~Ii~rhiLPni~~~liv~~~~~~~~aIl~ea~LsFLGl 237 (296)
T PRK09881 158 NAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGL 237 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88899999879999999999999996349999999839886785414276661889999999999999999999999037
Q ss_pred H-HH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9-99--99999974101003551369999999999999999999999999998433789
Q gi|254780172|r 330 F-DL--LGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGSK 385 (386)
Q Consensus 330 ~-el--~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~r 385 (386)
. +- -.=+.++..+.++.... -...++-++...+....++.++..++..++-..|
T Consensus 238 G~~pp~~sWG~mi~~~~~~~~~~--~w~~~~Pg~~i~l~vl~~nllgdgLrd~ldPr~r 294 (296)
T PRK09881 238 GAQQPSAEWGAMVANGRNYVLDQ--WWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAG 294 (296)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999985999999999999877--2999999999999999999999999998196557
No 51
>PRK10999 malF maltose transporter membrane protein; Provisional
Probab=99.26 E-value=1.1e-09 Score=76.89 Aligned_cols=200 Identities=20% Similarity=0.287 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHH------------H
Q ss_conf 00247877999999999998756775444127-86889997898888761472289-9999999766------------4
Q gi|254780172|r 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNS-NIPVLRYACITFIELFRGVPLVT-VLFMASIMLP------------L 238 (386)
Q Consensus 173 ~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s-~~~~l~~~~~~~ie~~Rg~Pli~-~lf~~~~~lp------------~ 238 (386)
.|.=+..|+.-++.+..+.+.+|+++|+.-.. +.|- |.+-+...-+=-.+|-.+ .+.|. .++. +
T Consensus 283 f~~v~~WT~~fa~~sv~~~~~lGl~lAllln~~~~rg-r~~~R~l~ilP~avP~~is~lvw~-~mfn~~~G~iN~~L~~l 360 (520)
T PRK10999 283 FIAIFVWTVVFSLLTVVFTVAVGMVLACLVQWEALKG-KAVYRVLLILPYAVPSFISILIFK-GLFNQSFGEINMMLSAL 360 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHC
T ss_conf 5666766789999999999999999999828756660-768999999998999999999999-84288865799999980
Q ss_pred H-CCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 1-558877387999---999999998999899999999845866789999962168999999996998998620047999
Q gi|254780172|r 239 F-LPDTWDVDKLLR---ALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTF 314 (386)
Q Consensus 239 ~-lp~g~~~~~~~~---a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~ 314 (386)
+ ....+--|+.++ .++.=.--.-.|+.=++-||+|+||+.++|||+-=|-++||.+++|.+|+..+...|-++..+
T Consensus 361 ~g~~~~Wl~dp~~A~~~viiv~~W~g~p~~~i~~la~Lq~IP~~lyEAA~iDGA~~~~~f~~ITlPll~~~~~~lli~~~ 440 (520)
T PRK10999 361 FGIKPAWFSDPTTARTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASF 440 (520)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHEEEEECCCCHHHHHHHHHHHH
T ss_conf 59998634796999999999999951729999999987159989999998529656504514672023588999999999
Q ss_pred HHHHHHHHHHHHHH--------------HHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99996128999999--------------999999--99997410100355136999999999999999999999999999
Q gi|254780172|r 315 IGLFKDSSLISIIN--------------MFDLLG--IVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEK 378 (386)
Q Consensus 315 i~l~KdTsL~~~Ig--------------~~el~~--~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~ 378 (386)
+.-+|+=.+.+.+. -.|++- .-|.+-.... ...+-. =-.++++-|+++..+|.+.-+.-|
T Consensus 441 i~~fn~F~~I~llT~GGP~~~~~~~pag~TdiLv~y~Y~~aF~~~~-~~~~G~---ASAis~iiFiiv~~~s~i~fr~tk 516 (520)
T PRK10999 441 AFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFEGGG-GQDFGL---AAAIATLIFLLVGALALLNLKATK 516 (520)
T ss_pred HHHHHCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9996252577643489988777888885076799999999982477-645509---999999999999999999999984
No 52
>PRK10417 nikC nickel transporter permease NikC; Provisional
Probab=99.23 E-value=2e-09 Score=75.42 Aligned_cols=197 Identities=13% Similarity=0.153 Sum_probs=143.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 11002478779999999999987567754441278688999789888876147228999999997664155887738799
Q gi|254780172|r 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLL 250 (386)
Q Consensus 171 t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~ 250 (386)
+..+-|...|+.+++.+.++++.+|.++++.--.....+..+....+|++...|-+.+..+.. ..+ |. ...
T Consensus 60 srll~G~r~sl~i~l~~~~~~~~iG~~lG~~ag~~gg~~d~~~~~~~d~~~~iP~lll~i~l~---~~~---g~---~~~ 130 (272)
T PRK10417 60 SRLMAGTRVSLGSVMACLLLVLALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILSFFMV---GVL---GT---GLT 130 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHH---HHC---CC---CCH
T ss_conf 999999999999999999999999999999999718761247777788986286287788888---644---89---725
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998999899999999845-866789999962168999999996998998620047999999961289999999
Q gi|254780172|r 251 RALLGVSAFASAYIAEVLRGGLQSI-SKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329 (386)
Q Consensus 251 ~a~i~l~l~~aAy~aEi~Rggl~sv-p~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~ 329 (386)
..++++++..-+..+.++|+-..++ .+.-.|||+++|.|+++.+++-|+|..+...+-..+.++...+-.-+-.+.+|+
T Consensus 131 ~~il~l~l~~w~~~ar~iR~~~l~~~~~~yV~AAr~~G~s~~~I~~rhilPni~~~i~v~~~~~~~~~Il~~a~LsFLGl 210 (272)
T PRK10417 131 NVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLLGAVIPSLLVLATLDIGHMMLHVAGLSFLGL 210 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999889999999999999999899999999839587783220176763789999999999999999999999047
Q ss_pred H---------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9---------999999997410100355136999999999999999999999999999843378
Q gi|254780172|r 330 F---------DLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGS 384 (386)
Q Consensus 330 ~---------el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~ 384 (386)
. .+++.++....+ + + ....+-++...+.+...+.++..++..++-.-
T Consensus 211 G~~pp~~~WG~ml~~~~~~l~~------~-p-w~~~~P~~~i~l~vl~~nllgd~Lrd~ldP~l 266 (272)
T PRK10417 211 GVTAPTAEWGVMINDARQFIWT------Q-P-LLMFWPGLALFISVMAFNLLGDALRDHLDPHL 266 (272)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH------C-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8999998899999999999997------8-4-99999999999999999999999999609664
No 53
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]
Probab=99.18 E-value=3.1e-09 Score=74.27 Aligned_cols=231 Identities=17% Similarity=0.270 Sum_probs=136.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43056899999999999740001112333468999998898851333357411111100247877999999999998756
Q gi|254780172|r 116 RWRPILVFLTGSILLTPMLIPSFPRKFLNSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGLLVTLVISFFGIIISMPLG 195 (386)
Q Consensus 116 ~WRv~la~ill~vll~~~l~~~~~~k~~~~l~~~~~~pil~~~Ll~gg~gl~~V~t~~~gGl~~Tl~l~~~~~~~~~~lG 195 (386)
++-|...+++...++++... ++. ..++..++++++ +. .++|.....|+.+-..+.+.|..+|
T Consensus 51 ~~~pp~l~i~i~~~la~~~~-----~~~-----~~i~t~~~l~~I-~~-------~GlW~~tM~TLaLVl~a~~isivIG 112 (290)
T COG4176 51 LAVPPLLLILIVALLAWFAS-----GLG-----LAIFTLLGLLLI-GN-------LGLWDQTMQTLALVLTATLISIVIG 112 (290)
T ss_pred HHCCHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHH-HH-------HCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 63589999999999999997-----515-----999999999999-98-------1508999999999999999999980
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 77544412786889997898888761472289999999976641558877387999999999998999899999999845
Q gi|254780172|r 196 ILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSI 275 (386)
Q Consensus 196 ~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~sv 275 (386)
+.++... ++++.++.+..-..+++.-+|--+ |++|-..--|+.. ..++++-.+|...-+-.--+=|+..|
T Consensus 113 iPlGI~~-ar~~~~~~i~~PiLDlMQTmP~FV------YLIPav~lFGlG~---VPg~iAtvIfA~PP~IRlT~LGIrqV 182 (290)
T COG4176 113 IPLGIWA-ARSPRVYRIVRPILDLMQTMPTFV------YLIPAVMLFGLGN---VPGLIATVIFAMPPMIRLTNLGIRQV 182 (290)
T ss_pred CHHHHHH-HCCHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHCCCCC---CCEEEEEEEEECCCHHHHHHCCCCCC
T ss_conf 0489998-536889999968999986054279------9999999907888---76341365653681587763241017
Q ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHHCCCCCH
Q ss_conf 866789999962168999999996998998620047999999961-2899999999----99999999741010035513
Q gi|254780172|r 276 SKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKD-SSLISIINMF----DLLGIVRVNFSESTWISSVT 350 (386)
Q Consensus 276 p~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~Kd-TsL~~~Ig~~----el~~~~~~~~~~~~~~~~~~ 350 (386)
|+.-.|||+|.|-|+||.+.+|-||-|+..++-++ ||.|.+=-. .-.++.||.. |.++..+... ...
T Consensus 183 p~eliEA~~AFG~t~~Q~L~kVqLPlA~PtIMaGi-NQtIMlALsMVVIAsMIGa~GLG~~Vl~~i~~ld-------ig~ 254 (290)
T COG4176 183 PAELIEAADAFGATPRQKLFKVQLPLALPTIMAGI-NQTIMLALSMVVIASMIGAGGLGQEVLRGIQRLD-------IGL 254 (290)
T ss_pred CHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-------HHH
T ss_conf 89999999970898888978720743077899866-7999999999999998757877689999988721-------377
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 699999999999999999999999999984337899
Q gi|254780172|r 351 PTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGSKK 386 (386)
Q Consensus 351 ~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~rR 386 (386)
-+| +++---++...+.|+++..-+|-+.++||
T Consensus 255 g~~----aGlaIVilAIiLDRitq~~~~~~~~~~~~ 286 (290)
T COG4176 255 GFE----AGLAIVILAIILDRLTQAFGRKAKSRHRR 286 (290)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 776----30899999999999988845453102212
No 54
>PRK10352 nickel transporter permease NikB; Provisional
Probab=99.14 E-value=6.2e-09 Score=72.49 Aligned_cols=223 Identities=15% Similarity=0.139 Sum_probs=146.8
Q ss_pred CCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHH----HHH
Q ss_conf 3333574-----111111002478779999999999987567754441-278688999789888876147228----999
Q gi|254780172|r 160 LYGGLGL-----SIVETSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLV----TVL 229 (386)
Q Consensus 160 l~gg~gl-----~~V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli----~~l 229 (386)
+.|.+|. ++|......-++.|+.++..++++++++|+.++.-- ..+.+........+.-+..++|-. ..+
T Consensus 76 l~GD~G~S~~~~~pV~~~I~~~lp~Tl~L~~~a~~l~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~la~lli 155 (314)
T PRK10352 76 LHLDFGISFATQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLV 155 (314)
T ss_pred HEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 22457876636886089888763788999999999999998599999872079721013105899878731999999999
Q ss_pred HHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999997664155887-738799999999999899989999999984-586678999996216899999999699899862
Q gi|254780172|r 230 FMASIMLPLFLPDTW-DVDKLLRALLGVSAFASAYIAEVLRGGLQS-ISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVI 307 (386)
Q Consensus 230 f~~~~~lp~~lp~g~-~~~~~~~a~i~l~l~~aAy~aEi~Rggl~s-vp~GQ~EAA~alGls~~q~~~~IilPQAlr~~i 307 (386)
++..+.++.+-+.|. .+..+.--++++++...++.+-..|+.+.. ..+.-.+.|+|-|+++++..++-+++.|+--.+
T Consensus 156 ~~fa~~l~~~P~~g~~~~~~liLP~l~l~l~~~a~~~r~~R~~~~e~l~~dyv~~ArakGls~~~i~~rh~lrnal~P~i 235 (314)
T PRK10352 156 MAFSVYLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLSDRQVERRHILRNASLPMI 235 (314)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHH
T ss_conf 99999647678767783365411199999999999999999999998632999999986989313608652874298899
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 00479999999612899999999999999997410100355136999-9999999999999999999999998433789
Q gi|254780172|r 308 PGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTG-LIFIGFVFWIFCFSISLYSVFIEKTLHKGSK 385 (386)
Q Consensus 308 P~l~n~~i~l~KdTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~-y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~r 385 (386)
+.+..++..++-++-++-.| +..-|.++...+.-. ++.+.-+.+ .++.++++.+.+.........+.-|+++|+.
T Consensus 236 t~~~~~~~~ll~GavivE~i--F~~pGlG~ll~~Ai~-~rD~p~v~g~~l~~~~~~v~~nli~Dily~~lDPRiR~~~g 311 (314)
T PRK10352 236 TAVGMHIGELIGGTMIIENI--FAWPGVGRYAVSAIF-NRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEG 311 (314)
T ss_pred HHHHHHHHHHHCCHHHEEHH--HCCCCHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999984776100187--547675999999998-13889999999999999999999999999964863157899
No 55
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.10 E-value=3.8e-08 Score=67.77 Aligned_cols=220 Identities=16% Similarity=0.204 Sum_probs=135.3
Q ss_pred CCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHH----HH
Q ss_conf 3333574-----111111002478779999999999987567754441-2786889997898888761472289----99
Q gi|254780172|r 160 LYGGLGL-----SIVETSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVT----VL 229 (386)
Q Consensus 160 l~gg~gl-----~~V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~----~l 229 (386)
..|.+|. ++|.+...+-++.|+.+++.+.++++.+|+.++... ..+.+..........-+..++|--. .+
T Consensus 73 ~~gdfG~S~~~~~pV~~~I~~~lp~Tl~L~~~a~iis~~lgi~LG~~aa~~~~~~~D~~~~~~~~~~~siP~F~~~~lli 152 (317)
T COG0601 73 LHGDFGTSFVYKRPVADLILERLPATLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIPSFWLGLLLI 152 (317)
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 48688733567996899999884999999999999999999999999994489759999999999999602999999999
Q ss_pred HHHHHHHHHHCC-CCCC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 999997664155-8877-----------3879999999999989998999999998-45866789999962168999999
Q gi|254780172|r 230 FMASIMLPLFLP-DTWD-----------VDKLLRALLGVSAFASAYIAEVLRGGLQ-SISKGQFEAANSLGLSYLQKMRL 296 (386)
Q Consensus 230 f~~~~~lp~~lp-~g~~-----------~~~~~~a~i~l~l~~aAy~aEi~Rggl~-svp~GQ~EAA~alGls~~q~~~~ 296 (386)
++..+-+..+ | .|.. +....--++++++...|+.+...|+.+. ...+.-.++|+|-|+++++..++
T Consensus 153 ~~f~~~l~~~-P~~g~~~~~~~~~~~~~~~h~iLP~~~L~~~~~a~~~r~~R~~~~e~l~~dyV~~AraKGl~~~~i~~k 231 (317)
T COG0601 153 LLFSVKLGWL-PVGGRGSAGSWDSFLDALKHLILPALTLGLVSLAGIARLTRSSMLEVLNQDYVRTARAKGLSERRILFK 231 (317)
T ss_pred HHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHH
T ss_conf 9999996768-988878865156799999999999999999999999999999999998668999999879992510398
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99699899862004799999996128999999999999999974101003551369-99999999999999999999999
Q gi|254780172|r 297 IIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPT-TGLIFIGFVFWIFCFSISLYSVF 375 (386)
Q Consensus 297 IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~-e~y~~~a~iY~ii~~~ls~~~~~ 375 (386)
-+++.|+--.+....-++..++-++-++- .++..=|+++...+.-. .+.+.-+ -...+.++++.+.+......-..
T Consensus 232 H~lrNa~iP~vt~~~~~~~~ll~GavivE--~iF~~pGiG~l~~~Ai~-~~D~p~i~g~~~~~~~~~i~~nli~Dily~~ 308 (317)
T COG0601 232 HALRNALLPVITVLGLQLGGLLGGAVVVE--TVFSWPGLGRLLVDAIL-NRDYPVVQGIVLVIALLVILGNLLVDILYAL 308 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHH--HHCCCCCHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 63376488899999999999984687873--54087784999999998-2484999999999999999999999999996
Q ss_pred HHHHHCCC
Q ss_conf 99984337
Q gi|254780172|r 376 IEKTLHKG 383 (386)
Q Consensus 376 lE~rl~~~ 383 (386)
++-|.+.+
T Consensus 309 lDPRir~~ 316 (317)
T COG0601 309 LDPRIRLG 316 (317)
T ss_pred CCCCCCCC
T ss_conf 49756688
No 56
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=99.01 E-value=4.3e-08 Score=67.42 Aligned_cols=218 Identities=16% Similarity=0.247 Sum_probs=139.5
Q ss_pred CCCCCCCCC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCCHH----HH
Q ss_conf 333357411------111100247877999999999998756775444-1278688999789888876147228----99
Q gi|254780172|r 160 LYGGLGLSI------VETSLWGGLLVTLVISFFGIIISMPLGILLALG-RNSNIPVLRYACITFIELFRGVPLV----TV 228 (386)
Q Consensus 160 l~gg~gl~~------V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~-r~s~~~~l~~~~~~~ie~~Rg~Pli----~~ 228 (386)
+.|.+|... |.+.....++.|+.++..+.++++++|+.+++. -..+.+..........-+..++|-. ..
T Consensus 71 l~GD~G~S~~~~~~~V~~~i~~~lp~Tl~L~~~a~~i~~~lgi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~la~ll 150 (306)
T PRK09471 71 AHGDFGPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLL 150 (306)
T ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68988776726898889999988899999999999999999999999999834751619999999999998999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99999976641558877387---99999999999899989999999984-586678999996216899999999699899
Q gi|254780172|r 229 LFMASIMLPLFLPDTWDVDK---LLRALLGVSAFASAYIAEVLRGGLQS-ISKGQFEAANSLGLSYLQKMRLIIMPQVIK 304 (386)
Q Consensus 229 lf~~~~~lp~~lp~g~~~~~---~~~a~i~l~l~~aAy~aEi~Rggl~s-vp~GQ~EAA~alGls~~q~~~~IilPQAlr 304 (386)
+++..+-++.+-..|..-+. +.--++++++...|+.+...|+.+.. ..+.-.+.|+|-|+++++..++-+++.|+-
T Consensus 151 i~iF~~~l~~~P~~g~~~~~~~~liLP~~~l~l~~~~~~~r~~R~~~~~~l~~dyV~~ArakGl~~~~i~~rh~lrnal~ 230 (306)
T PRK09471 151 VMIFAIILHWLPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALL 230 (306)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHH
T ss_conf 88999721763778887520788753699999999999999999999999877999999986998400730012984299
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86200479999999612899999999999999997410100355136999-99999999999999999999999984
Q gi|254780172|r 305 RVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTG-LIFIGFVFWIFCFSISLYSVFIEKTL 380 (386)
Q Consensus 305 ~~iP~l~n~~i~l~KdTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~-y~~~a~iY~ii~~~ls~~~~~lE~rl 380 (386)
-.+..+..++..++-++-++- .++..-|.++...+.-. ++.+.-+.+ .++.++++.+.+.........++-|+
T Consensus 231 P~it~~~~~~~~ll~GsvivE--~iF~~PGiG~l~~~Ai~-~~D~p~v~g~~l~~a~~~i~~nll~Dil~~~lDPRi 304 (306)
T PRK09471 231 PVLSYMGPAFVGIITGSMVIE--TIFGLPGIGQLFVNGAL-NRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKI 304 (306)
T ss_pred HHHHHHHHHHHHHHCCHHHHH--HHHCCCCHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999845871210--98647675999999998-049899999999999999999999999999729755
No 57
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.01 E-value=1.2e-08 Score=70.70 Aligned_cols=138 Identities=22% Similarity=0.280 Sum_probs=98.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-------
Q ss_conf 1110024787799999999999875677544412786889997898888761472289999999976641558-------
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPD------- 242 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~------- 242 (386)
+.+.|.-+.+|+.++.++.++++++|+.+|..--.+....+.+....+..==-.|..|.=| +.+-.|-+.
T Consensus 2 ~~~~~~~l~LSlkvA~ist~~~l~lgi~~a~~Lar~~~~~k~ll~~lv~LPLVLPPtV~G~---~LLi~fgr~g~iG~~l 78 (225)
T COG4149 2 TPEELTALLLSLKVALISTLLLLPLGIALAYLLARRRFRGKSLLESLVLLPLVLPPVVLGF---LLLVLFGRNGFIGQFL 78 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHH---HHHHHHCCCCCHHHHH
T ss_conf 7678889999999999999999999999999997255776309999997323689538999---9999974777067899
Q ss_pred ----CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf ----87738-799999999999899989999999984586678999996216899999999699899862004
Q gi|254780172|r 243 ----TWDVD-KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGI 310 (386)
Q Consensus 243 ----g~~~~-~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l 310 (386)
|..+. .+..++++=.+.+=.+|-.-.|+++++||+.-.|||+.+|-|++|++.+|+||-+++-++-+.
T Consensus 79 ~~~~g~~~~Fs~~gavlAs~vvslPlmv~~~~~a~~~id~~le~aA~tlGas~~~vf~~i~LPLalpGIlag~ 151 (225)
T COG4149 79 EDWFGLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELEEAARTLGASRWEVFFRITLPLALPGILAGV 151 (225)
T ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEECCCCHHHHHHHH
T ss_conf 9975970798448999999999889899999999985684599999981888021310014022106799999
No 58
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=98.96 E-value=3.4e-07 Score=62.05 Aligned_cols=219 Identities=13% Similarity=0.199 Sum_probs=136.0
Q ss_pred CCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCCHH----HHH
Q ss_conf 3333574-----11111100247877999999999998756775444-1278688999789888876147228----999
Q gi|254780172|r 160 LYGGLGL-----SIVETSLWGGLLVTLVISFFGIIISMPLGILLALG-RNSNIPVLRYACITFIELFRGVPLV----TVL 229 (386)
Q Consensus 160 l~gg~gl-----~~V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~-r~s~~~~l~~~~~~~ie~~Rg~Pli----~~l 229 (386)
+.|.+|. ++|.......++.|+.++..+.++++.+|+.+++. -..+.+..........-+..++|-- ..+
T Consensus 74 l~Gd~G~S~~~~~pV~~~i~~~lp~Tl~L~~~a~il~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~lallli 153 (339)
T PRK10914 74 MHGDLGISLKSRIPVWEEFVPRFKATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLI 153 (339)
T ss_pred HCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 73888873426883699998727258999999999999999999999998527511136788898612306999999999
Q ss_pred HHHHHHHHHHCCC-CC-----------------CC------------CH---HHHHHHHHHHHHHHHHHHHHHHHHH-HC
Q ss_conf 9999976641558-87-----------------73------------87---9999999999989998999999998-45
Q gi|254780172|r 230 FMASIMLPLFLPD-TW-----------------DV------------DK---LLRALLGVSAFASAYIAEVLRGGLQ-SI 275 (386)
Q Consensus 230 f~~~~~lp~~lp~-g~-----------------~~------------~~---~~~a~i~l~l~~aAy~aEi~Rggl~-sv 275 (386)
++..+-++.+ |. |. .+ |. +.--++++++...|+.+-..|+.+. ..
T Consensus 154 ~if~~~l~~~-P~~G~~~~~~~~~~~~p~~g~~~~~~~~~g~~~~~~~~l~hliLP~l~L~l~~~a~~~r~~R~~~~~~l 232 (339)
T PRK10914 154 MLVSVHWNLT-PVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVL 232 (339)
T ss_pred HHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999995747-776767653124666665541001114204511378899999999999999999999999999999998
Q ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HH
Q ss_conf 86678999996216899999999699899862004799999996128999999999999999974101003551369-99
Q gi|254780172|r 276 SKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPT-TG 354 (386)
Q Consensus 276 p~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~-e~ 354 (386)
.+.-.+.|+|-|+++.+.+.+-+++.|+--.+..+..++..++-++-++-. ++..-|.++...+.-. ++.+..+ -.
T Consensus 233 ~~dyV~~ArakGl~~~~i~~~h~lrnal~P~it~~g~~~~~ll~GsvivE~--vF~~pGiG~l~~~Ai~-~rD~pvi~g~ 309 (339)
T PRK10914 233 GEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTET--IFSWPGLGRWLIDALQ-RRDYPVVQGG 309 (339)
T ss_pred HHHHHHHHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHH-HCCHHHHHHH
T ss_conf 349999999859493314049839860998999999999999976999869--8677576999999998-3588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999998433
Q gi|254780172|r 355 LIFIGFVFWIFCFSISLYSVFIEKTLHK 382 (386)
Q Consensus 355 y~~~a~iY~ii~~~ls~~~~~lE~rl~~ 382 (386)
.++.++++.+.+.........+.-|++.
T Consensus 310 ~l~~~~~~i~~nli~Dil~~~lDPRiR~ 337 (339)
T PRK10914 310 VLLVATMIILVNLLVDLLYGVVNPRIRH 337 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999999999999862840478
No 59
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR006469 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents a clade of ABC porter genes with relatively weak homology compared to its neighbour clades, the molybdate (IPR006229 from INTERPRO) and sulphate (IPR005667 from INTERPRO) porters. Neighbour-Joining, PAM-distance phylogenetic trees support the separation of these clades in this way. Included in this group are the NifC genes of Clostridium pasteurianum and Pasteurella multocida, which are involved in the biosynthesis and/or control of nitrogenase. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within this group are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulphate porter. There is presently no experimental evidence to support annotations with this degree of specificity.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=98.83 E-value=3.9e-07 Score=61.69 Aligned_cols=175 Identities=19% Similarity=0.235 Sum_probs=118.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCCHHH----HHH-HH--HHHHHHHCCC
Q ss_conf 1100247877999999999998756775444-12786889997898888761472289----999-99--9976641558
Q gi|254780172|r 171 TSLWGGLLVTLVISFFGIIISMPLGILLALG-RNSNIPVLRYACITFIELFRGVPLVT----VLF-MA--SIMLPLFLPD 242 (386)
Q Consensus 171 t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~-r~s~~~~l~~~~~~~ie~~Rg~Pli~----~lf-~~--~~~lp~~lp~ 242 (386)
.+.-.-+.+.+.-+.++.++.+.+|+..|.. -|+++...++..+.++++=--.|.+| +|. +. ...-+++-+.
T Consensus 17 ~~~~~al~lSl~Ts~~sl~l~~~~g~P~A~~lar~~n~pl~~~l~~ll~LP~VlPPlV~G~aLLl~FG~~g~lG~~l~~a 96 (226)
T TIGR01581 17 PELIKALRLSLLTSLASLLLAVVLGIPTAYVLARVRNFPLKKLLDTLLDLPLVLPPLVAGIALLLLFGRLGLLGPYLEAA 96 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999999999999999998899999887506854778999866542466588899999972021268999864
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 87738-79999999999989998999999998458667899999621689999999969989986200479999999612
Q gi|254780172|r 243 TWDVD-KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDS 321 (386)
Q Consensus 243 g~~~~-~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdT 321 (386)
|++.- .-...++|=++-+++|+=-+.|++.++||++-.|||+++|.++.|++++|.+|-+.+-.+-+.
T Consensus 97 Gi~~~Fs~~gvvlAQ~FVa~p~~vr~~r~~f~~v~~~ye~va~~lG~g~~~t~~~v~lPl~~~~ll~G~----------- 165 (226)
T TIGR01581 97 GIQVIFSTLGVVLAQTFVASPYLVRVARSTFESVDPDYEDVARSLGAGPLETFRKVTLPLARPGLLAGL----------- 165 (226)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-----------
T ss_conf 416788889999999999999999999976730383489999880787226788875775336888879-----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 899999999999999997410100355136999999
Q gi|254780172|r 322 SLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIF 357 (386)
Q Consensus 322 sL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~ 357 (386)
=|+..=.+.| .|++=+...+.+...+.-+++.|+-
T Consensus 166 vLafaRalGE-FGATL~~AG~~~g~TrTlPl~iY~~ 200 (226)
T TIGR01581 166 VLAFARALGE-FGATLMFAGSLQGKTRTLPLAIYLN 200 (226)
T ss_pred HHHHHHHHHH-HHHHHHHHCCCCCCCEEHHHHHHHH
T ss_conf 9999997565-6789998436777530127888645
No 60
>PRK10998 malG maltose transporter permease; Provisional
Probab=98.82 E-value=2.7e-06 Score=56.61 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---CCCCCCCCH
Q ss_conf 0024787799999999999875677544412-786889997898888761472289999999976641---558877387
Q gi|254780172|r 173 LWGGLLVTLVISFFGIIISMPLGILLALGRN-SNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLF---LPDTWDVDK 248 (386)
Q Consensus 173 ~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~-s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~---lp~g~~~~~ 248 (386)
.+..+..|+.+++.+.++++.+|+..|.+-. .+.| -|......+-...-.|..+.+.=.|.++..+ .+ -...|-
T Consensus 81 ~~~~~~NSl~va~~~~v~~l~~~~~aaYalar~~f~-g~~~l~~~~l~~~~iP~~~~~ip~~~~~~~lgl~~~-~~~l~t 158 (296)
T PRK10998 81 VLLWLWNSVKIAGITAIGIVALSTTCAYAFARMRFP-GKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYIP-FIGLNT 158 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHH
T ss_conf 899999999999999999999999999987312155-589999999999998899999999999999602022-013322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 9999999999989998999999998458667899999621689999999969989986200479999999612
Q gi|254780172|r 249 LLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDS 321 (386)
Q Consensus 249 ~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdT 321 (386)
....++.. +..-++.-=+.|+.++++|+...|||+--|.|++|++++|++|-+.....-...=.++.--.|=
T Consensus 159 ~~~ii~~~-~~~~~~~i~ll~~ff~~iP~el~EAA~iDGas~~~~f~~IilPl~~P~i~t~~i~~fi~~WNef 230 (296)
T PRK10998 159 HGGVIFAY-LGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEV 230 (296)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 49999999-9999999999999986297989999998599777797876786259999999999999999999
No 61
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
Probab=98.77 E-value=2e-06 Score=57.40 Aligned_cols=146 Identities=22% Similarity=0.245 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-------HHHCCCCHHHHHHHHHHHHHHHC-CCC
Q ss_conf 1002478779999999999987567754441278688999789888-------87614722899999999766415-588
Q gi|254780172|r 172 SLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFI-------ELFRGVPLVTVLFMASIMLPLFL-PDT 243 (386)
Q Consensus 172 ~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~i-------e~~Rg~Pli~~lf~~~~~lp~~l-p~g 243 (386)
..|.-+.-|+.++....+.++.+|...|..-....+-.|......+ .++|.--.++++= -.-.++.++ .-|
T Consensus 63 ~y~~v~~~Sl~iA~~~T~~~lligyP~Ay~la~~~~~~r~~ll~lvilPfwts~LiR~yawi~iL~-~~G~iN~~L~~lG 141 (287)
T COG1176 63 LYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLLLLVILPFWTSLLIRTYAWIVILG-RNGLINQALLALG 141 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHCC
T ss_conf 899999999999999999999999999999996773799999999999998999999999999983-4771648899768
Q ss_pred CC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 77------387999999999998999899999999845866789999962168999999996998998620047999999
Q gi|254780172|r 244 WD------VDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGL 317 (386)
Q Consensus 244 ~~------~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l 317 (386)
+. +......++++.-..-.||-=-+-++++.+|+.-.|||+.||-+++|++++|++|++..-++-+..=.|+--
T Consensus 142 l~~~p~~ll~~~~aV~igmvy~~lPfmiLPly~al~~id~~L~eAA~dLGA~~~~~F~~VilPLs~pGi~aG~~lVFi~a 221 (287)
T COG1176 142 LIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPGIIAGSLLVFIPA 221 (287)
T ss_pred CCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHHHHHHH
T ss_conf 87886798805336768999986599999999999839978999998759976547642032177189999999998977
Q ss_pred H
Q ss_conf 9
Q gi|254780172|r 318 F 318 (386)
Q Consensus 318 ~ 318 (386)
+
T Consensus 222 l 222 (287)
T COG1176 222 L 222 (287)
T ss_pred H
T ss_conf 5
No 62
>TIGR02141 modB_ABC molybdate ABC transporter, permease protein; InterPro: IPR011867 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterised in Escherichia coli , Staphylococcus carnosus Rhodobacter capsulatus and Azotobacter vinlandii . Molybdate is chemically similar to sulphate, thiosulphate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulphate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulphate permease proteins and not included in this model.; GO: 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0016021 integral to membrane.
Probab=98.75 E-value=4.7e-07 Score=61.23 Aligned_cols=184 Identities=18% Similarity=0.253 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHCCC-CC--------
Q ss_conf 8779999999999987567754441-2786889997898888761472289---999999976641558-87--------
Q gi|254780172|r 178 LVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVT---VLFMASIMLPLFLPD-TW-------- 244 (386)
Q Consensus 178 ~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~---~lf~~~~~lp~~lp~-g~-------- 244 (386)
.+|+.++.++.++.+++|+..|..- +++. ..|.+ +|-.=..|++. + .+|+.+=.|-|. |.
T Consensus 1 ~LSlk~A~~~Tl~~~~LGi~~A~~La~~~f-~gK~~----le~L~~LPLVLPPtV--~Gf~LL~~fG~~~G~~G~l~~~~ 73 (212)
T TIGR02141 1 LLSLKVAVIATLLLLPLGIPVAWLLARSRF-RGKSL----LEALVTLPLVLPPTV--LGFYLLLAFGRNSGPIGKLLELL 73 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHH----HHHHHHCCCCCCCHH--HHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 779999999999999999999999988617-60454----464443266356378--99999998803574077898865
Q ss_pred CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 738----7999999999998999899999999845866789999962168999999996998998620047999999961
Q gi|254780172|r 245 DVD----KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKD 320 (386)
Q Consensus 245 ~~~----~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~Kd 320 (386)
.++ -+..+++|-.+++-.++-.-.|++.+++++.-.|+|+.+|.|+++++++|+||-+.+ +++-.
T Consensus 74 ~~~Gl~Ft~~g~vlAs~~VSfPl~v~~~~~a~~~~~~~~~~~ArtLGaS~~~~f~~v~LPL~~p-----------G~l~G 142 (212)
T TIGR02141 74 GISGLVFTFAGAVLASVVVSFPLMVRTIRGAFEAVDPDLEEAARTLGASELRVFLKVTLPLAFP-----------GLLAG 142 (212)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------HHHHH
T ss_conf 0685246699999999999977689999999986271289999882787899899998573289-----------99999
Q ss_pred HHHHHHHHHHHH----HHHHHHHH-HHHHCCCCCHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 289999999999----99999974-10100355136999--9----999999999999999999999998
Q gi|254780172|r 321 SSLISIINMFDL----LGIVRVNF-SESTWISSVTPTTG--L----IFIGFVFWIFCFSISLYSVFIEKT 379 (386)
Q Consensus 321 TsL~~~Ig~~el----~~~~~~~~-~~~~~~~~~~~~e~--y----~~~a~iY~ii~~~ls~~~~~lE~r 379 (386)
.-|.+.=++-|+ |-.+|.-. .+|--..-|..+|. = ....++-.++|+..-...+++|||
T Consensus 143 ~vL~FAR~LGEFGAtlm~aGNIpGkT~T~plaIY~~v~~lg~~~~A~~l~l~ll~~s~~~ll~~~~~~~R 212 (212)
T TIGR02141 143 AVLSFARALGEFGATLMFAGNIPGKTRTIPLAIYDAVESLGDYEAAHLLSLVLLALSLIVLLLVELLNKR 212 (212)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999997502113443100469796301767788677057886789999999999999999999875059
No 63
>PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional
Probab=98.71 E-value=6.9e-06 Score=54.21 Aligned_cols=144 Identities=18% Similarity=0.161 Sum_probs=91.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 11002478779999999999987567754441-27868899978988887614722899999999766415588773879
Q gi|254780172|r 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKL 249 (386)
Q Consensus 171 t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~ 249 (386)
.+.+..+..|+.+++.+.++++.++..-|.+- +.+.|. |.....++-...-.|..+.+.=.|.+.-.+ |. .|..
T Consensus 71 ~~f~~~~~NSliva~~~~~~~~~~~~~aaYalsr~~f~~-~~~~~~~~l~~~~iP~~~~~iP~~~~~~~l---gl-~~t~ 145 (281)
T PRK10973 71 APFGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPL-RNLFFWMIFITLMLPVEVRIFPTVEVIANL---KM-LDSY 145 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CC-CCCH
T ss_conf 159999999999999999999999999999999840541-999999999999989999999999999993---97-1108
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 999999999989998999999998458667899999621689999999969989986200479999999612
Q gi|254780172|r 250 LRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDS 321 (386)
Q Consensus 250 ~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdT 321 (386)
..-+ +....++..-=++|+-+++||+...|||+-=|.|++|++++|++|.+.....-...=.++..-.|=
T Consensus 146 ~gli--l~~~~~~~~i~l~~~f~~~IP~el~EAA~iDGas~~~~f~~IilPl~kP~i~tv~i~~fi~~WNef 215 (281)
T PRK10973 146 AGLT--LPLMASATATFLFRQFFMTLPDELVEAARIDGAGPMRFFWDIVLPLSKTNLAALFVITFIYGWNQY 215 (281)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999--999999999999999997688889999998198677781541002659999999999999999979
No 64
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=98.67 E-value=2.5e-05 Score=50.89 Aligned_cols=136 Identities=21% Similarity=0.204 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 100247877999999999998756775444--127868899978988887614722899999999766415588773879
Q gi|254780172|r 172 SLWGGLLVTLVISFFGIIISMPLGILLALG--RNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKL 249 (386)
Q Consensus 172 ~~~gGl~~Tl~l~~~~~~~~~~lG~llal~--r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~ 249 (386)
+.+..+..++.+++.+.++++.+|..-|.+ |. +.|-- ......+-...-.|..+.+.=.|.++-.+ |. .|..
T Consensus 70 ~~~~~~~NS~iva~~~t~l~~~~~~laaYalar~-~f~g~-~~l~~~~l~~~m~P~~v~~iPl~~~~~~l---gl-~nt~ 143 (281)
T COG0395 70 GFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARF-RFKGR-KLLFLLLLLTLMLPAQVLLIPLYLLMRKL---GL-LNTY 143 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-HHHH
T ss_conf 8999999899999999999999999989999985-33609-99999999999856999999899999982---66-1047
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999998999899999999845866789999962168999999996998998620047999999
Q gi|254780172|r 250 LRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGL 317 (386)
Q Consensus 250 ~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l 317 (386)
+..++..+.++.++..=.+|+-.++|||.-.|||+-=|.|++|++++|++|.+. |++....|-.
T Consensus 144 ~glil~~~~~~~pf~ifl~~~ff~~iP~eLeEAA~iDGas~~~if~kI~lPl~~----P~iaa~aI~~ 207 (281)
T COG0395 144 WGLILPYLAFGLPFAIFLLRQFFRTIPKELEEAARIDGASEFQIFFKIVLPLAK----PGLAAVAIFT 207 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCH----HHHHHHHHHH
T ss_conf 999999999988899999999998698999999998289657899999987037----8999999999
No 65
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]
Probab=98.55 E-value=2.1e-05 Score=51.32 Aligned_cols=198 Identities=17% Similarity=0.214 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHCCC--------
Q ss_conf 0024787799999999999875677544412-7868899978988887614722-89999999976641558--------
Q gi|254780172|r 173 LWGGLLVTLVISFFGIIISMPLGILLALGRN-SNIPVLRYACITFIELFRGVPL-VTVLFMASIMLPLFLPD-------- 242 (386)
Q Consensus 173 ~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~-s~~~~l~~~~~~~ie~~Rg~Pl-i~~lf~~~~~lp~~lp~-------- 242 (386)
.+-=+..|+.+++..++++++..+.+|+.-. -++...+...... -=.|- +.+.-.+++..-++-++
T Consensus 77 ff~i~rNTl~~s~~~li~gf~~pI~lAillnElr~~~~kk~~QT~----~y~PhFlSWVVv~~~v~~fls~d~GiiN~ll 152 (309)
T COG4209 77 FFIILRNTLLYSVLFLILGFPVPIILAILLNELRNKVFKKVVQTI----SYLPHFLSWVVVSGFVFAFLSIDGGIINQLL 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCHHEEEHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 999999999999999999537999999999999877788887663----3300021003056578876366751899999
Q ss_pred ---CC------CCCHHHHH-HHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf ---87------73879999-9999999-8999899999999845866789999962168999999996998998620047
Q gi|254780172|r 243 ---TW------DVDKLLRA-LLGVSAF-ASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIV 311 (386)
Q Consensus 243 ---g~------~~~~~~~a-~i~l~l~-~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~ 311 (386)
|. .-+.+++- ++..+++ +..|-+-++-+++..|++.|+|||+-=|-|+||.+++|.+||....++=-+.
T Consensus 153 ~~~g~~pi~fl~~~~wf~~i~i~~~vWK~~G~~SIiylAai~~Idpt~YEAA~vDGA~rwqqiwhITlP~i~P~ivIllI 232 (309)
T COG4209 153 MSLGGDPINFLTNPDWFRPIIIFSSVWKGAGWNSIIYLAAIAGIDPTLYEAAMVDGASRWQQIWHITLPAIRPLIVILLI 232 (309)
T ss_pred HHCCCCCEEHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 98289831021588602678878988842367889999999727999999998054887788882110323149999999
Q ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999996----------12899999999999999997410100355136999999999999999999999999999843
Q gi|254780172|r 312 NTFIGLFK----------DSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLH 381 (386)
Q Consensus 312 n~~i~l~K----------dTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~ 381 (386)
=..=++++ +.+-..+-.+.| +++-+.-..+.+ +- + =..+++.=-++|+.+-..++++-||++
T Consensus 233 L~iG~i~~~gFe~~yll~~~~~~~v~~vld-tYVy~~gl~~Gd----~s-~--sTAaGlf~svVg~iLl~~aN~iakr~~ 304 (309)
T COG4209 233 LNIGNIFNAGFELFYLLPNPSGYDVTEVLD-TYVYRGGLVTGD----YS-Y--STAAGLFQSVVGFILLFLANRIAKRFD 304 (309)
T ss_pred HHHHHHHHCCHHHEEEECCCCCCCHHHHHH-HHHHHHCCCCCC----CC-H--HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 985237653725606605766874898999-999981013575----11-8--999999999999999999999999706
Q ss_pred C
Q ss_conf 3
Q gi|254780172|r 382 K 382 (386)
Q Consensus 382 ~ 382 (386)
.
T Consensus 305 ~ 305 (309)
T COG4209 305 N 305 (309)
T ss_pred C
T ss_conf 2
No 66
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=98.49 E-value=7.3e-05 Score=48.06 Aligned_cols=154 Identities=23% Similarity=0.227 Sum_probs=106.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 1110024787799999999999875677544412786889-997898888761472289999999976641558877387
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVL-RYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDK 248 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l-~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~ 248 (386)
++..+-.+..|++++.+..+++..+-.+-|.+ -||.+.- |.-.-.+.-++.=.|-+.-+--.|.++..+ | -+|.
T Consensus 68 ~~~y~~W~~Nsliva~~t~~i~v~~~~~~aYa-fSR~rF~GRk~~L~~~Li~qMfP~~~aliAlY~l~~~l---g-llnt 142 (282)
T COG3833 68 PFPYLLWLWNSLIVALITAAITVALVTLAAYA-FSRYRFKGRKYLLKFFLILQMFPGVAALIALYVLLKLL---G-LLNT 142 (282)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C-CHHH
T ss_conf 81789999999999999999999999998988-99862655899999999999989999999999999996---5-7116
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999899989999999984586678999996216899999999699899862004799999996128999999
Q gi|254780172|r 249 LLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIIN 328 (386)
Q Consensus 249 ~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig 328 (386)
.+.-+.+-.=-..+|.+=.++|=+++||+.--|||+-=|.++||++++|++|-+.+...=.-.+.|++-+-|=-|++.+=
T Consensus 143 ~~gLil~Y~gG~ip~n~~l~Kgy~DTIP~sldEaA~iDGAt~~q~F~~IvLPLs~P~lavvaL~~FiGp~~dfiLa~~lL 222 (282)
T COG3833 143 LWGLILAYLGGAIPMNTWLIKGYFDTIPKSLDEAAKIDGATRFQIFRRILLPLSKPILAVVALLAFIGPFGDFILASLLL 222 (282)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999647326889999844503895679998654850689999999860005999999999875779999999997
No 67
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. These proteins represent a family of phosphonate uptake transporters., probably responsible for the transport of phosphonate across the inner membrane. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0005887 integral to plasma membrane.
Probab=98.47 E-value=1.7e-05 Score=51.93 Aligned_cols=175 Identities=21% Similarity=0.372 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 78779999999999987567754441278---6889997898888761472289--999999976641558877387999
Q gi|254780172|r 177 LLVTLVISFFGIIISMPLGILLALGRNSN---IPVLRYACITFIELFRGVPLVT--VLFMASIMLPLFLPDTWDVDKLLR 251 (386)
Q Consensus 177 l~~Tl~l~~~~~~~~~~lG~llal~r~s~---~~~l~~~~~~~ie~~Rg~Pli~--~lf~~~~~lp~~lp~g~~~~~~~~ 251 (386)
...|+.+++.+.+++..+|+.+++..-.+ +|+++.+.+=..|..|..|=++ -+|++...| .| ..
T Consensus 5 M~~T~~IA~~~T~~~V~l~~~l~ll~A~NL~Pn~W~~~~VRRLM~~~RA~~E~V~A~lF~~~~~L----------GP-~~ 73 (192)
T TIGR01097 5 MLVTLNIAVFSTILAVVLSIILGLLAAKNLVPNPWVRQIVRRLMDILRAINEVVIAGLFLVILSL----------GP-IA 73 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CC-HH
T ss_conf 99999999999999999999999986752588842104789999999776799999999999950----------51-89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHH----HHHHHHHHHHHH
Q ss_conf 9999999989998999999998458667899999621689999999969989986200479999----999612899999
Q gi|254780172|r 252 ALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFI----GLFKDSSLISII 327 (386)
Q Consensus 252 a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i----~l~KdTsL~~~I 327 (386)
++.|+.+++..-.+..+--..++++.+=.|.=||.|-++-....|=++||.+ |.+++.+. .-.+.++.+-.+
T Consensus 74 ~~~A~~IHT~G~L~KLl~E~VE~~~~~P~EG~RA~GAN~~E~~~yG~~PQVl----P~l~SY~L~RlE~NVR~~T~~G~V 149 (192)
T TIGR01097 74 AVLALFIHTIGVLSKLLFEVVEAIDMKPVEGLRAVGANKLERVLYGVLPQVL----PLLISYFLLRLEINVRAATVVGAV 149 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHH----HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999899999999986158989766523330378899960102676----889999999998865555653044
Q ss_pred HH---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99---99999999974101003551369999999999999999999999999
Q gi|254780172|r 328 NM---FDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFI 376 (386)
Q Consensus 328 g~---~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~l 376 (386)
|- .|++..+ +.+ +++-.....+ ++-++-.+.+..+|+||
T Consensus 150 G~GGIG~~L~~~---I~~------~~~~~T~A~~-~L~~~T~~~~D~lS~~L 191 (192)
T TIGR01097 150 GAGGIGVLLRLA---IRQ------FQEAKTLALV-LLLIVTVFLLDFLSARL 191 (192)
T ss_pred CCCCHHHHHHHH---HHC------CHHHHHHHHH-HHHHHHHHHHHHHHHHC
T ss_conf 787276899998---603------3068899999-99999999999987740
No 68
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=98.17 E-value=0.00052 Score=42.95 Aligned_cols=168 Identities=23% Similarity=0.356 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 47877999999999998756775444127868899978988887614722899999-99976641558877387999999
Q gi|254780172|r 176 GLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFM-ASIMLPLFLPDTWDVDKLLRALL 254 (386)
Q Consensus 176 Gl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~-~~~~lp~~lp~g~~~~~~~~a~i 254 (386)
|+.+|+.-+++++..|-..|.. -..+-....-+||+.-+.|.+-++-. +++..|- ++....
T Consensus 147 gL~lT~~SaliGv~~GA~qGyf--------gg~vdL~~QRfIEvws~mP~lyllii~as~~~p~----------f~~ll~ 208 (341)
T COG4239 147 GLSLTLISALIGVLAGALQGYF--------GGWVDLLGQRFIEVWSGMPTLYLLIILASIFQPN----------FWWLLG 208 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC----------HHHHHH
T ss_conf 9999999999999888775341--------3004887705999984472999999999996854----------799999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHH----
Q ss_conf 999998999899999999-8458667899999621689999999969989986---20047999999961289999----
Q gi|254780172|r 255 GVSAFASAYIAEVLRGGL-QSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRV---IPGIVNTFIGLFKDSSLISI---- 326 (386)
Q Consensus 255 ~l~l~~aAy~aEi~Rggl-~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~---iP~l~n~~i~l~KdTsL~~~---- 326 (386)
-.-+|+=--.+.++|+-. .+-.-.-..||+|+|.+..++|.|-++|.|+... +|=+.+-.|..+ |||-+.
T Consensus 209 i~llf~Wm~lv~vvRaefLr~Rn~dYvkAArAlGv~d~~Ii~rHilPnamvatlTflPf~l~~sitTl--tsLdFLgfgl 286 (341)
T COG4239 209 IMLLFGWMSLVGVVRAEFLRARNLDYVKAARALGVSDRRIILRHILPNAMVATLTFLPFILSGSITTL--TSLDFLGFGL 286 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCHHHH--HHHHHHCCCC
T ss_conf 99999999999999999998602688999997398865030213262988999998789870633230--0166652699
Q ss_pred ----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ----999999999999741010035513699999999999999999
Q gi|254780172|r 327 ----INMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFS 368 (386)
Q Consensus 327 ----Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ 368 (386)
=++.|++.++|.-.+ .-|.+ +.+++..+++--++.+.
T Consensus 287 p~gspSLGELl~qgk~nlq-apWlg----it~fv~l~~~lslLvfI 327 (341)
T COG4239 287 PPGSPSLGELLNQGKNNLQ-APWLG----ITAFVVLSLLLSLLIFI 327 (341)
T ss_pred CCCCCCHHHHHHHHHHCCC-CCHHH----HHHHHHHHHHHHHHHHH
T ss_conf 9999678999997652477-84255----88999999999999994
No 69
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysT, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysW (IPR011866 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=98.15 E-value=3.1e-06 Score=56.27 Aligned_cols=216 Identities=20% Similarity=0.278 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHCCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 9999988988513333574-----111111002478779999999999987567754-4412786889997898888761
Q gi|254780172|r 148 LFGLFPIFSFFVLYGGLGL-----SIVETSLWGGLLVTLVISFFGIIISMPLGILLA-LGRNSNIPVLRYACITFIELFR 221 (386)
Q Consensus 148 ~~~~~pil~~~Ll~gg~gl-----~~V~t~~~gGl~~Tl~l~~~~~~~~~~lG~lla-l~r~s~~~~l~~~~~~~ie~~R 221 (386)
+..+.|+.+.++..-..|. -.-+.+--.-+.+|+..++.+..+-.++|+++| +--|++. +-|++.++-||+==
T Consensus 18 livllPl~al~~k~~~~gw~~FW~~~~~P~vlaay~~sf~~Al~Aa~~N~vFG~l~AWVLVRY~F-PGKri~DAlVDLPF 96 (265)
T TIGR02139 18 LIVLLPLAALFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRF-PGKRIVDALVDLPF 96 (265)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHCCCC
T ss_conf 99999999999998327988999998538999999999999999999999999999889861247-50577766623354
Q ss_pred CCCH------HHHHHH-----HHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 4722------899999-----9997664155887738--79999999999989998999999998458667899999621
Q gi|254780172|r 222 GVPL------VTVLFM-----ASIMLPLFLPDTWDVD--KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGL 288 (386)
Q Consensus 222 g~Pl------i~~lf~-----~~~~lp~~lp~g~~~~--~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGl 288 (386)
..|- ++=+|= +.+.= |-|+++- ++ =.++|+++-+=.++=-.+.==+|.++|.--|||.+||=
T Consensus 97 ALPTAVAGIaL~TlY~~NGWiG~~l~----~lGIKvAfTpl-Gi~~Al~FvsLPFVVRTVQPVL~e~~~E~EEAA~~LGA 171 (265)
T TIGR02139 97 ALPTAVAGIALATLYAPNGWIGSFLE----PLGIKVAFTPL-GIVVALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGA 171 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHH----HCCCEEEEECC-CEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 20347999999999628894012585----54987887201-01434233258825731143000588648999765168
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------CCCCCHHHHHHH
Q ss_conf 68999999996998998620047999999961289999999999999999741010------------035513699999
Q gi|254780172|r 289 SYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSEST------------WISSVTPTTGLI 356 (386)
Q Consensus 289 s~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~el~~~~~~~~~~~~------------~~~~~~~~e~y~ 356 (386)
|+||++||||+|.-. |+ ++-.++|++.=|+.|- |.-=-+..|.= -+.. ++++.=.
T Consensus 172 S~w~tF~~vilP~L~----PA-------LLTG~ALaFARa~GEY-GSViFIAGN~P~~tEI~PLLI~~kLEq-YDY~gAT 238 (265)
T TIGR02139 172 SRWQTFWKVILPALL----PA-------LLTGFALAFARAVGEY-GSVIFIAGNLPMKTEIAPLLIFIKLEQ-YDYAGAT 238 (265)
T ss_pred CCHHEEEEEECCCCC----CH-------HHHHHHHHHHHHHHHH-HCEEEECCCCCCHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 820002223314440----06-------9997899887543233-300022268880678899999777544-1237899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999998433
Q gi|254780172|r 357 FIGFVFWIFCFSISLYSVFIEKTLHK 382 (386)
Q Consensus 357 ~~a~iY~ii~~~ls~~~~~lE~rl~~ 382 (386)
.+|.+=+++++.|=..-+.+..+.+|
T Consensus 239 aIA~vmL~~SF~~Ll~IN~lQ~~~~r 264 (265)
T TIGR02139 239 AIAVVMLLISFVLLLFINLLQWRALR 264 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999997506
No 70
>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, This entry describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulphate ABC transporter; GO: 0015563 uptake transmembrane transporter activity, 0006810 transport, 0016020 membrane.
Probab=97.86 E-value=1.6e-06 Score=58.06 Aligned_cols=157 Identities=18% Similarity=0.224 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCC
Q ss_conf 999988988513333574111-----111002478779999999999987567754441-27868899978988887614
Q gi|254780172|r 149 FGLFPIFSFFVLYGGLGLSIV-----ETSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRG 222 (386)
Q Consensus 149 ~~~~pil~~~Ll~gg~gl~~V-----~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg 222 (386)
+.+.|+...++-.---|++.+ +.+.-.-..+|+.+++++..+-.++|++.|.-= |.+. +=|.+-...+|+==+
T Consensus 38 iL~lP~~~l~~~~f~~gl~~~~~~~tdP~~~~A~~lT~~~aliav~lN~vFG~~~AWvLtR~~F-PGr~lLda~~DLPFA 116 (280)
T TIGR00969 38 ILLLPVIALFVQAFSKGLEQFWQNATDPNAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQF-PGRKLLDALIDLPFA 116 (280)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCCC
T ss_conf 9999999999999745988999984298899999999999999999999999999999971269-825899998621334
Q ss_pred CCHHHHHHHHHHHHHHHC-----------CCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHH
Q ss_conf 722899999999766415-----------5887738-7999999999998999899999999845866789999962168
Q gi|254780172|r 223 VPLVTVLFMASIMLPLFL-----------PDTWDVD-KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSY 290 (386)
Q Consensus 223 ~Pli~~lf~~~~~lp~~l-----------p~g~~~~-~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~ 290 (386)
+|-.+- -.++=.+. +-|+.+= ...=..+|-.+-+-.++.--+.==+|...+.|-|||.+||=|.
T Consensus 117 lspvVA----GL~l~llYg~~Gw~G~~~~~fgiqI~F~~~G~~lAmiFvs~PFVvRev~PVL~Elg~e~EEAA~tLGA~~ 192 (280)
T TIGR00969 117 LSPVVA----GLTLALLYGSNGWLGSWLASFGIQIIFTWPGVALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASG 192 (280)
T ss_pred CCHHHH----HHEEEEEECCCCCCCCHHHHCCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHCCCCHHHHHHHCCCCC
T ss_conf 250675----3300045357785113230178689984121466653421680454310013413855789998628998
Q ss_pred HHHHHHHHHHHHHHHHHCCH
Q ss_conf 99999999699899862004
Q gi|254780172|r 291 LQKMRLIIMPQVIKRVIPGI 310 (386)
Q Consensus 291 ~q~~~~IilPQAlr~~iP~l 310 (386)
||++|||+||.-..-.+-+.
T Consensus 193 WQtFwRV~LP~i~w~llyGv 212 (280)
T TIGR00969 193 WQTFWRVTLPSIRWALLYGV 212 (280)
T ss_pred CEEEEEEECCCCCHHHHHHH
T ss_conf 30267876688726788867
No 71
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=97.59 E-value=0.0005 Score=43.07 Aligned_cols=119 Identities=13% Similarity=0.205 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH----------HHHHHHHHHHHHHHH
Q ss_conf 9899999999845866789999962168999999996998998620047999999----------961289999999999
Q gi|254780172|r 263 YIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGL----------FKDSSLISIINMFDL 332 (386)
Q Consensus 263 y~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l----------~KdTsL~~~Ig~~el 332 (386)
.+-.+-..++-||||.-.+...|||-++|||+.+|++|-|-.-+.-+++--+=-- .-||++. -..++|=
T Consensus 598 ~IFsiAEDAiFSVP~sLs~GSLALGATPWQTL~~VVlltAspGIFSAiMiG~GRAVGETMIVLMATGNtP~~-~~nIFeG 676 (733)
T COG4590 598 TIFSIAEDAIFSVPKSLSDGSLALGATPWQTLIYVVLLTASPGIFSAIMIGLGRAVGETMIVLMATGNTPLL-DWNIFEG 676 (733)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-CCCHHHH
T ss_conf 345342244324785446673013687145401457504684188999975111106258999723898521-2228777
Q ss_pred HHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999--99974101003551369999999999999999999999999998433
Q gi|254780172|r 333 LGI--VRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHK 382 (386)
Q Consensus 333 ~~~--~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~ 382 (386)
|+. ++.+..-|+---...++-+....+++-+.++|.+.-++.++..|+..
T Consensus 677 mRtlaAniAvEmPEseVgs~HyRvLFL~ALvLltFTF~vNtLAE~vRqRLRe 728 (733)
T COG4590 677 MRTLAANIAVEMPESEVGSAHYRVLFLAALVLLTFTFAVNTLAEWVRQRLRE 728 (733)
T ss_pred HHHHHHHHHHCCCHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8887655212176544066334268999999999999998999999999998
No 72
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=97.56 E-value=0.0058 Score=36.66 Aligned_cols=193 Identities=20% Similarity=0.334 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHH---HHHHHHCCCCHHHHHHHHHHH----HHHH------
Q ss_conf 24787799999999999875677544412786--88999789---888876147228999999997----6641------
Q gi|254780172|r 175 GGLLVTLVISFFGIIISMPLGILLALGRNSNI--PVLRYACI---TFIELFRGVPLVTVLFMASIM----LPLF------ 239 (386)
Q Consensus 175 gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~--~~l~~~~~---~~ie~~Rg~Pli~~lf~~~~~----lp~~------ 239 (386)
......+.++..+-++|..+|++++..-.-.- ..+|...- ....=|-|+|+-. -|.+..+ +..|
T Consensus 56 ~a~~~Sikis~aSsl~G~lig~~~a~alv~~~~ps~ir~~lltfsgvaSnFaGVPLAf-AFiatLG~~G~vtv~Lk~~~g 134 (282)
T COG4132 56 QAYWISIKISFASSLLGLLIGFLLAWALVLGGLPSWIRSFLLTFSGVASNFAGVPLAF-AFIATLGRNGLVTVFLKTLGG 134 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHCCCHHHHHHHHHHCC
T ss_conf 9999998679999889999999999999977947888877842314554136871999-999996544169999998427
Q ss_pred ---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf ---55887738799999999999899989999999984586678999996216899999999699899862004799999
Q gi|254780172|r 240 ---LPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIG 316 (386)
Q Consensus 240 ---lp~g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~ 316 (386)
...|.++-.++-..+....|.-.-+--+.--++++..|.-.|||.-+|-+.||-.|.|-+|- ..|++-++++.
T Consensus 135 ~~~~~~~fnl~s~~GltitY~yFQIPL~vlil~PA~dgLk~ewreaa~~LGa~~~qYWrmva~Pi----L~PsllGt~vl 210 (282)
T COG4132 135 FNLYSTGFNLLSFFGLTITYVYFQIPLMVLILTPAFDGLKKEWREAAAILGATGWQYWRMVALPI----LWPSLLGTFVL 210 (282)
T ss_pred CCEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HHHHHHHHHHH
T ss_conf 43004650488862525775788656899989766666789999999986774289999998998----51999888999
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 996128999999999999----------999974101003551369999999999999999999999999998
Q gi|254780172|r 317 LFKDSSLISIINMFDLLG----------IVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKT 379 (386)
Q Consensus 317 l~KdTsL~~~Ig~~el~~----------~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~r 379 (386)
++-+. ...+-....+++ .+| +..|-. ..+--.|.. +..--++.-..+.+-.|+.+|
T Consensus 211 LfANA-fGA~ATayaLtgsslNivPI~l~Aq-IrGDVl----~np~lg~AL-a~~mi~it~v~n~~~~wlr~r 276 (282)
T COG4132 211 LFANA-FGAYATAYALTGSSLNIVPILLYAQ-IRGDVL----HNPNLGYAL-AFGMIVITGVANLLYIWLRKR 276 (282)
T ss_pred HHHHH-HHHHHHHHHHCCCCCCHHHHHHHHH-HHCCCC----CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987-7577878775068754168999999-821456----895189999-999999999999999999987
No 73
>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]
Probab=97.49 E-value=4.2e-05 Score=49.49 Aligned_cols=136 Identities=16% Similarity=0.208 Sum_probs=89.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-CHHH-HHHHHHHHHH-----HH
Q ss_conf 111111002478779999999999987567754441278688999789888876147-2289-9999999766-----41
Q gi|254780172|r 167 SIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGV-PLVT-VLFMASIMLP-----LF 239 (386)
Q Consensus 167 ~~V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~-Pli~-~lf~~~~~lp-----~~ 239 (386)
...++|.+....+|+.++.++..+-..+|+..|..-....-.=|.+....||+==++ |.+. +.|...|+.. .+
T Consensus 57 ~~~~PdalsAi~LTllva~I~VPlN~vFGv~aAW~iakf~F~Gk~lL~tlIDlPFsVSPVvaGl~~vLl~g~~g~lG~wl 136 (287)
T COG4208 57 ALSDPDALSAIKLTLLVALIAVPLNVVFGVAAAWAIARFEFPGKALLLTLIDLPFSVSPVVAGLVYVLLFGSNGWLGGWL 136 (287)
T ss_pred HHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 84696689999999999986300789999999999997058844466565437774227998789999870566320788
Q ss_pred CCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 55887738-7999999999998999899999999845866789999962168999999996998
Q gi|254780172|r 240 LPDTWDVD-KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQV 302 (386)
Q Consensus 240 lp~g~~~~-~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQA 302 (386)
...|+.+= .+.--+++-.+-+..++|.-+--=+|+-.++|-|||.+||-|.||+++||.||.-
T Consensus 137 ~~~~iqIiFa~PGiVLaT~FVT~PFVaREliPlmq~qG~~eEeAA~~LGAsgWQtFwrVTLPnI 200 (287)
T COG4208 137 EAHDIQIIFAVPGIVLATIFVTCPFVARELIPLMQEQGTDEEEAALTLGASGWQTFWRVTLPNI 200 (287)
T ss_pred HHCCCEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 8579469995474135452221612898987999883984889998726230110256754730
No 74
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases..
Probab=97.47 E-value=0.005 Score=37.08 Aligned_cols=219 Identities=20% Similarity=0.265 Sum_probs=149.7
Q ss_pred CCCCCCCCCC------CCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH--HHHH
Q ss_conf 3357411111------10024787799999999----9998756775444127868899978988887614722--8999
Q gi|254780172|r 162 GGLGLSIVET------SLWGGLLVTLVISFFGI----IISMPLGILLALGRNSNIPVLRYACITFIELFRGVPL--VTVL 229 (386)
Q Consensus 162 gg~gl~~V~t------~~~gGl~~Tl~l~~~~~----~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pl--i~~l 229 (386)
=.||..+++. +.---++.|+.++..|+ ..|+|+|++.|.-|.+ ..-...+.++-+.-++|- +..+
T Consensus 78 LDFGiSYi~i~rpV~De~~~~LPaTl~LA~~aL~i~vlvSvPLG~LAA~~r~~---~~D~~~R~~~FlG~siPnFWLA~L 154 (315)
T TIGR02789 78 LDFGISYISIDRPVLDEVARSLPATLELAGLALVIVVLVSVPLGILAARYRDR---LPDHAVRFISFLGVSIPNFWLAFL 154 (315)
T ss_pred HCCCCEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 31464056668950888974353889999999999999984088999887368---640789999999643056899999
Q ss_pred --HHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf --9999976641558877-387999999999998999899999999845-866789999962168999999996998998
Q gi|254780172|r 230 --FMASIMLPLFLPDTWD-VDKLLRALLGVSAFASAYIAEVLRGGLQSI-SKGQFEAANSLGLSYLQKMRLIIMPQVIKR 305 (386)
Q Consensus 230 --f~~~~~lp~~lp~g~~-~~~~~~a~i~l~l~~aAy~aEi~Rggl~sv-p~GQ~EAA~alGls~~q~~~~IilPQAlr~ 305 (386)
+..++-|..+=+.|-. -.-+.-=.+++++-+-|--+--+|+.+... .+--..=||.=|+++.|++++=|||.|+.-
T Consensus 155 Lv~~fsvyL~lLP~~G~gtW~HlvLP~~tlal~~~a~y~RLLRaS~Ld~~qe~yv~yAR~RGi~~~~v~~~H~Lrna~~p 234 (315)
T TIGR02789 155 LVFLFSVYLDLLPVEGAGTWQHLVLPAVTLALMSVAIYARLLRASMLDNLQERYVTYARVRGIKERNVIRRHILRNAILP 234 (315)
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHECCCCHHHHHHHHHHCCCCHHH
T ss_conf 99999998613376778733113388899999999999999999999862887073011026465776886324111025
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCC--
Q ss_conf 6200479999999612899999999999999997410100355136999999999999999999-9999999998433--
Q gi|254780172|r 306 VIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSI-SLYSVFIEKTLHK-- 382 (386)
Q Consensus 306 ~iP~l~n~~i~l~KdTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~l-s~~~~~lE~rl~~-- 382 (386)
++-+++=+...|+-.|=.+-.| +-.=|.++-..+ .-+|+.|--++.|++.....|++|=.+ -....++.=|..|
T Consensus 235 ~iTA~GM~~g~Ll~GT~viE~i--FswPG~GRy~i~-AifNRDyPviQcy~Ll~~~lfv~cNLivD~~~a~lDPR~rR~E 311 (315)
T TIGR02789 235 MITALGMHIGELLGGTLVIENI--FSWPGVGRYAIS-AIFNRDYPVIQCYTLLMALLFVLCNLIVDLLQALLDPRIRRKE 311 (315)
T ss_pred HHHHHHHHHHHHHHCCEEEEEE--CCCCCHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 6776001388784071145410--126661045743-3562376389999999999999999999999985187611104
Q ss_pred CCCC
Q ss_conf 7899
Q gi|254780172|r 383 GSKK 386 (386)
Q Consensus 383 ~~rR 386 (386)
|.+|
T Consensus 312 G~~a 315 (315)
T TIGR02789 312 GVHA 315 (315)
T ss_pred CCCC
T ss_conf 6889
No 75
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.0064 Score=36.42 Aligned_cols=122 Identities=26% Similarity=0.352 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC--C-CCCCHHHHHHHHHH
Q ss_conf 99999999999875677544412786889997898888761472289999999976641558--8-77387999999999
Q gi|254780172|r 181 LVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPD--T-WDVDKLLRALLGVS 257 (386)
Q Consensus 181 l~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~--g-~~~~~~~~a~i~l~ 257 (386)
+.+..++.+.++++|.-+++ +|-......--+.+.-+-|--. ++|+.... + +-.|.++ +..|.
T Consensus 327 ~vilals~~i~i~lGy~i~~-----~p~~e~i~~P~~Q~LaafPa~~-------~FPl~~aa~~~~i~~~ei~--l~pL~ 392 (523)
T COG4986 327 VVILALSFLISIFLGYSIAL-----RPRVEGIGQPLIQFLAAFPAPI-------YFPLLFAAIKTFILTPEIW--LSPLG 392 (523)
T ss_pred HHHHHHHHHHHHHHHHHEEE-----CCCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHCCCHHH--HHHHH
T ss_conf 99999999999986574031-----5116554127999987189237-------8889999999986074577--74677
Q ss_pred HH-HHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 99-899989999999984586678999996216899999999699899862004799999
Q gi|254780172|r 258 AF-ASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIG 316 (386)
Q Consensus 258 l~-~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~ 316 (386)
+. +==|+-=.+-.|..++|..-.|+|+.++++.|..+|+|++|-.++..+-++.+..-+
T Consensus 393 ~~gT~~Yi~~n~iaG~ka~P~e~~e~akny~l~~w~k~r~iilP~tFPYlitG~~tt~gg 452 (523)
T COG4986 393 FIGTFYYIFYNVIAGAKALPVEYFEAAKNYNLGGWAKWRRIILPGTFPYLITGLSTTIGG 452 (523)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 766789999999987652778999999970835599888875364229998747753046
No 76
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysW, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysT (IPR011865 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=97.34 E-value=7.8e-05 Score=47.89 Aligned_cols=135 Identities=21% Similarity=0.257 Sum_probs=92.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHCCC-CHHH-HHHHHHHH----HHHHCC
Q ss_conf 1111002478779999999999987567754441278688-999789888876147-2289-99999997----664155
Q gi|254780172|r 169 VETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPV-LRYACITFIELFRGV-PLVT-VLFMASIM----LPLFLP 241 (386)
Q Consensus 169 V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~-l~~~~~~~ie~~Rg~-Pli~-~lf~~~~~----lp~~lp 241 (386)
-+.|--.-+.+|++++.+++.+-+++|+..|..= +|++. =|..-...||+==++ |.+. +.|.--|+ =.-...
T Consensus 41 ~~Pd~~sA~~LTlLv~~I~VPlN~~FGv~~Aw~~-~rf~FpGk~lL~t~iDlPFSVSPVvAGL~~~LLyGrqGW~~Plie 119 (275)
T TIGR02140 41 SDPDALSAIKLTLLVALIVVPLNTVFGVAAAWVL-TRFQFPGKRLLLTIIDLPFSVSPVVAGLIFVLLYGRQGWSQPLIE 119 (275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 5955899998988667653307889999999998-743167457677777604432248999999998431001362234
Q ss_pred CCCCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 8877387----------------999999999998999899999999845866789999962168999999996998998
Q gi|254780172|r 242 DTWDVDK----------------LLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKR 305 (386)
Q Consensus 242 ~g~~~~~----------------~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~ 305 (386)
+|.+++. ..--+++=.+-+..++|-=+-==+|.--+.|-|||..||=|.||+++||.||. +|=
T Consensus 120 dGvrfsG~lG~~l~~~d~~IiF~~PGivLAT~FVT~PFVAREliPvl~~qG~~~EeAAltLGAs~WqtFwrVTLPn-IkW 198 (275)
T TIGR02140 120 DGVRFSGWLGPWLEDRDIKIIFSLPGIVLATIFVTLPFVARELIPVLEEQGTEQEEAALTLGASWWQTFWRVTLPN-IKW 198 (275)
T ss_pred CCCCEECCCHHHHHHCCCEEEECCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCC-CHH
T ss_conf 3420004202788862885887141341023432588012200113631594689999872776223335661687-157
No 77
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]
Probab=97.29 E-value=0.012 Score=34.69 Aligned_cols=200 Identities=19% Similarity=0.221 Sum_probs=116.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC-C-
Q ss_conf 11111002478779999999999987567754441278688999789888876147228999999997664155887-7-
Q gi|254780172|r 168 IVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTW-D- 245 (386)
Q Consensus 168 ~V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~-~- 245 (386)
.-+..+|+-...|+.++..++.++.+.|+.+|..-.++.---|+.....++-.-+.|-+.+=.+-|..+.---|-|. +
T Consensus 16 ~ld~~l~~iv~~tl~vSl~~i~laalv~~pLa~vl~~~~frgkr~i~~i~~tl~s~PTVlvGLlLylLlSr~GPlG~f~L 95 (227)
T COG4662 16 SLDPELIGIVATTLYVSLISIFLAALVGVPLAFVLALREFRGKRFIKMIINTLLSMPTVLVGLLLYLLLSRSGPLGWFNL 95 (227)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 18999999999999999999999997532899999983475479999999886316399999999999964699863036
Q ss_pred ---CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf ---387999--999999998999899999999845866789999962168999999996998998620047999999961
Q gi|254780172|r 246 ---VDKLLR--ALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKD 320 (386)
Q Consensus 246 ---~~~~~~--a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~Kd 320 (386)
.|...- +++++-+ .---+-+++||+++--.|-|+++|.|+.|.+..++---....+- +..--|--.+-+
T Consensus 96 LfT~~amILGq~iL~lPl-----via~~l~ale~~dpr~~ela~~lgas~~kl~~t~~~Earf~l~a-av~agfgR~V~E 169 (227)
T COG4662 96 LFTQDAMILGQAILILPL-----VIAFVLTALESVDPRLKELARSLGASPLKLASTVFREARFGLMA-AVAAGFGRAVAE 169 (227)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 762106998879999999-----99999999984597899999980995899999999999867999-999986179998
Q ss_pred HHHHHHHHHHHHHHHHHH---HHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 289999999999999999---741-0100355136999999999999999999999999999
Q gi|254780172|r 321 SSLISIINMFDLLGIVRV---NFS-ESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEK 378 (386)
Q Consensus 321 TsL~~~Ig~~el~~~~~~---~~~-~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~ 378 (386)
--.+..+| .++.+.++. +++ +|+ .| .++.=+..+++-..++..++....++..
T Consensus 170 vG~AmmvG-GnI~g~TR~itTAIslET~-kG---~fa~gIaLgiVLlaial~ln~vl~~l~~ 226 (227)
T COG4662 170 VGVAMMVG-GNIRGRTRVITTAISLETN-KG---NFAQGIALGIVLLAIALALNFVLTALQG 226 (227)
T ss_pred HHHHHHCC-CCCCCEEEEEHHHHHHHHC-CC---CHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 62776035-7511122330024435603-45---2988589999999999999999998446
No 78
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents thiamine ABC transporter, permease protein in bacteria, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane. The protein belongs to the larger ABC transport system. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). Thiamine pyrophosphate (TPP)1 is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and -ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=97.23 E-value=0.014 Score=34.29 Aligned_cols=205 Identities=20% Similarity=0.288 Sum_probs=141.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHH--HH-------
Q ss_conf 1110024787799999999999875677544412-----786889997898888761472289999999--97-------
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGRN-----SNIPVLRYACITFIELFRGVPLVTVLFMAS--IM------- 235 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~-----s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~--~~------- 235 (386)
|+-+|-=.....-=+..|.++|+..|+++|-+-- .|...+|..+-++| .|.+|.+|=.- |+
T Consensus 42 D~YL~H~~~FSF~QAlLS~~LS~~~~~lLARALy~~~F~G~~~LL~L~~lTl~-----LP~LV~~FG~~~~YG~~GWLA~ 116 (519)
T TIGR01253 42 DDYLQHLVLFSFGQALLSALLSVIFALLLARALYRKRFLGKKALLKLMALTLV-----LPVLVVVFGLLSVYGRSGWLAT 116 (519)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCHHHH
T ss_conf 40789999999899999999999999999999740688426899999999999-----9999999977764057537999
Q ss_pred -HHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf -6641-55887738799999999999899989999999984586678999996216899999999699899862004799
Q gi|254780172|r 236 -LPLF-LPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNT 313 (386)
Q Consensus 236 -lp~~-lp~g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~ 313 (386)
-..+ +.-..++-.+--..+|--+|+-.--|+.+=-++|+||-.|+.=|.-+||..||=.|.|.-| .+|.=+||..+
T Consensus 117 L~~~lGl~W~~~~YGL~GIL~AH~FFN~PlA~~LlLQ~L~~IP~~QRQLAAQL~l~~W~F~~lVEWP-~lR~Q~~P~~~- 194 (519)
T TIGR01253 117 LANLLGLEWTFSIYGLSGILLAHLFFNLPLAARLLLQALESIPYEQRQLAAQLNLRSWQFVKLVEWP-VLRRQILPVAA- 194 (519)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECH-HHHHHCCHHHH-
T ss_conf 9987187503433415799999999615699999999874178157799997167753056663051-23321125899-
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999961289999999---9999999997410100355136999999999999999999999999999843378
Q gi|254780172|r 314 FIGLFKDSSLISIINM---FDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGS 384 (386)
Q Consensus 314 ~i~l~KdTsL~~~Ig~---~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~ 384 (386)
.|-++==||...+.++ +.-|+.-..+.+.-.+ .|.+-.+ ...|++=+++|..+-..++|+.|-.+.|.
T Consensus 195 LIFMLCF~SF~~VL~LGGGPQ~TT~E~AIYQA~~y--~yD~~~A-AllAlLQ~V~CL~L~~L~~RlS~~~~~G~ 265 (519)
T TIGR01253 195 LIFMLCFASFAVVLSLGGGPQATTLELAIYQALLY--DYDLAKA-ALLALLQFVFCLILVLLSSRLSKAIANGL 265 (519)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999988899987358984068999999999873--1684689-99999999999999999887876405775
No 79
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.025 Score=32.83 Aligned_cols=121 Identities=20% Similarity=0.279 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 779999999999987567754441278688999789888876147228-----999999997664155887738799999
Q gi|254780172|r 179 VTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLV-----TVLFMASIMLPLFLPDTWDVDKLLRAL 253 (386)
Q Consensus 179 ~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli-----~~lf~~~~~lp~~lp~g~~~~~~~~a~ 253 (386)
-|..=-..++..|+..|..+|.... |.+....+-..-+|++.++|.+ ++.|+. +.+|- |-|.+ .++.
T Consensus 13 aT~gRm~~ai~iSi~~~~~lAy~A~-Ksk~~E~i~ip~ldVlqSVPVlgFfpi~l~~Fv-~lfpG--~lGvE----lAa~ 84 (523)
T COG4986 13 ATAGRMLLAILISILTGWFLAYAAI-KSKRFENIYIPVLDVLQSVPVLGFFPIVLIFFV-YLFPG--PLGVE----LAAD 84 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHH-HHCCC--CHHHH----HHHH
T ss_conf 9999999999999999999999998-520567613049988740851201053554443-43475--00389----9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999899989999999984586678999996216899999999699899862
Q gi|254780172|r 254 LGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVI 307 (386)
Q Consensus 254 i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~i 307 (386)
..+---.+=.++=-+.-....||+.-.|.|+-.+||.|+.|+++-.|-|++...
T Consensus 85 FlvFTs~aWNi~fs~YQsFkTvP~dl~Eva~~yrls~~~r~~rlyIPfa~Pgi~ 138 (523)
T COG4986 85 FLVFTSVAWNIWFSEYQSFKTVPSDLLEVARNYRLSFLLRMARLYIPFAMPGIA 138 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHH
T ss_conf 999999999999999998723878999999872658999878705431125679
No 80
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC; InterPro: IPR014157 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases..
Probab=96.98 E-value=0.011 Score=35.03 Aligned_cols=176 Identities=16% Similarity=0.196 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 47877999999999998756775444127868899978988887614722899999999766415588773879999999
Q gi|254780172|r 176 GLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLG 255 (386)
Q Consensus 176 Gl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~~a~i~ 255 (386)
|--+|+..+...+...+.+|+.+..---..=-.+-...-=++|.+=+-|-+++.+.. ...+ |. .+...++|
T Consensus 60 G~R~SLg~al~~l~~~~~iG~~iG~~aGy~GG~vD~~~MR~~D~~lsfPt~~L~L~i---vG~l---G~---Gl~nviiA 130 (258)
T TIGR02790 60 GARVSLGLALLVLGLVLVIGVLIGLIAGYIGGRVDEVIMRVCDVFLSFPTIVLALAI---VGLL---GP---GLENVIIA 130 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHH---HHHH---CC---CHHHHHHH
T ss_conf 999999999999999999999999985301540200025547588755789999999---8574---34---79999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-----
Q ss_conf 999989998999999998458-66789999962168999999996998998620047999999961289999999-----
Q gi|254780172|r 256 VSAFASAYIAEVLRGGLQSIS-KGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM----- 329 (386)
Q Consensus 256 l~l~~aAy~aEi~Rggl~svp-~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~----- 329 (386)
+.+-.=||-|-++||=.-|.- |.-.||||+.|-|.+|.++|=|+|..+.-++===+=+.=..+-+-|=.|.+|+
T Consensus 131 ~vl~~Wa~YAR~vRg~v~Slk~~~fvlaar~~g~s~~~ii~rHi~~~i~~~iiVLaTLeiG~~il~ia~LSFLGLGiQPP 210 (258)
T TIGR02790 131 LVLVQWAWYARMVRGMVVSLKQKEFVLAARASGASHWQIIRRHILPNILSPIIVLATLEIGHVILHIAALSFLGLGIQPP 210 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99975478999999999999868899999997589844504211321014799999689999999998766742378987
Q ss_pred -H---HHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf -9---99999999741-01003551369999999999999999
Q gi|254780172|r 330 -F---DLLGIVRVNFS-ESTWISSVTPTTGLIFIGFVFWIFCF 367 (386)
Q Consensus 330 -~---el~~~~~~~~~-~~~~~~~~~~~e~y~~~a~iY~ii~~ 367 (386)
+ =++..+|.... +| +.-.|=-++++.-+.||
T Consensus 211 tPEWG~Ml~eak~y~~t~P-------~lmiyPG~ail~~V~~F 246 (258)
T TIGR02790 211 TPEWGIMLSEAKEYLRTQP-------ELMIYPGLAILITVMAF 246 (258)
T ss_pred CCHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHH
T ss_conf 8345646887689886271-------78888659999999999
No 81
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=96.32 E-value=0.074 Score=30.02 Aligned_cols=186 Identities=18% Similarity=0.217 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHH
Q ss_conf 01112333468999998898851333357411111-----1002478779999999999987567754441-27868899
Q gi|254780172|r 137 SFPRKFLNSILLFGLFPIFSFFVLYGGLGLSIVET-----SLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLR 210 (386)
Q Consensus 137 ~~~~k~~~~l~~~~~~pil~~~Ll~gg~gl~~V~t-----~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~ 210 (386)
.-|...+...-++..+-.-.--++.|.||.....- ..-.-++-|+.+.+.++.+++.+|+.++... ..+.++..
T Consensus 29 fdP~apl~~~~l~~g~~~y~~~Llq~dFGis~~nG~pi~~~l~~vfPaT~ELC~~af~lal~~GiPlG~iagv~~~kw~d 108 (321)
T COG4168 29 FDPHAPLQGASLWQGWVFYFNGLLQWDFGISSINGQPIAEQLLEVFPATMELCFLAFGLALIVGIPLGMIAGVTRHKWLD 108 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHH
T ss_conf 38997301306999999999888520325215698008999998666189999999999999846479887754230788
Q ss_pred HHHHHHHHHHCCCCHH----HHHHHHHHHHHHHC------------C-CCCC-CCHH-----H------HHHHHH----H
Q ss_conf 9789888876147228----99999999766415------------5-8877-3879-----9------999999----9
Q gi|254780172|r 211 YACITFIELFRGVPLV----TVLFMASIMLPLFL------------P-DTWD-VDKL-----L------RALLGV----S 257 (386)
Q Consensus 211 ~~~~~~ie~~Rg~Pli----~~lf~~~~~lp~~l------------p-~g~~-~~~~-----~------~a~i~l----~ 257 (386)
......--+=-+.|.. ..+++...-++.+- | +|.. +|.+ . .++=-+ .
T Consensus 109 ~~i~~is~~G~SiPvFWlAl~ll~f~slh~~~~pv~GrydLLY~ikpiTGfalIDawls~spyRt~~iqs~lqHl~LP~l 188 (321)
T COG4168 109 KLISAISLLGFSIPVFWLALLLLLFFSLHLGWLPVSGRYDLLYEIKPITGFALIDAWLSDSPYRTEMIQSAIQHLILPTL 188 (321)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999998546745999999999999975141103431014565045466277889863770578999999999888899
Q ss_pred HHHHHHHHHHHHH----HHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 9989998999999----9984586678999996216899999999699899862004799999996128
Q gi|254780172|r 258 AFASAYIAEVLRG----GLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSS 322 (386)
Q Consensus 258 l~~aAy~aEi~Rg----gl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTs 322 (386)
.-+-|-..|++|= .-+-..+.-..||..=|+|++|..|+-++-.|++..+|-.+-+|-.++.-.-
T Consensus 189 vL~iaPTtevir~mr~s~~~Vl~qNyikaA~trGlS~~~Ilr~hVlrNalPplIPq~g~qfs~mLTlam 257 (321)
T COG4168 189 VLSVAPTTEVIRLMRQSTEEVLNQNYIKAAATRGLSRFTILRRHVLRNALPPLIPQLGLQFSTMLTLAM 257 (321)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999734799999999989999742489999965603558999999850478544413679999999999
No 82
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.78 E-value=0.28 Score=26.54 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 79999999999989998999999998458667899999621689999999969989986200479
Q gi|254780172|r 248 KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVN 312 (386)
Q Consensus 248 ~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n 312 (386)
.+..++-+-.+|.-.|+--+..+.-|+++..-..-|+++|-|++|++.+|-+|-.+|..+-++.-
T Consensus 414 ~w~~Vvw~H~~fv~P~v~l~Ls~pWq~~dsrf~kIA~~lGks~~~Iff~vklPLlfra~L~A~AV 478 (551)
T COG4135 414 SWTAVVWGHLLFVMPWVLLILSPPWQRIDSRFIKIAQTLGKSRAKIFFYVKLPLLFRACLIAFAV 478 (551)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 43999999999999999998474575527089999987083066788875045767999999998
No 83
>pfam03649 UPF0014 Uncharacterized protein family (UPF0014).
Probab=93.84 E-value=0.45 Score=25.32 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999989998999999998458667899999621689999999969989986200479999999612899999
Q gi|254780172|r 248 KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISII 327 (386)
Q Consensus 248 ~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~I 327 (386)
|..--+++=+++...--.|-+++++.+ .|+++|+..++|-+++|..+.. ..||+|.++=|..|+.- . +-++
T Consensus 128 Pi~GMilGNsMna~sLal~rl~~~l~~-~~~~iE~~LaLGAt~~~A~~~~-~r~Air~aliP~in~m~----~---vGlV 198 (250)
T pfam03649 128 PLMGMIIGNTMNTIHLALDKLIDMVKS-ERDIIWGYLALGATPIQALAPF-IRNAIRAALIPTVNRTK----S---VGLV 198 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHHHHHH----H---CCHH
T ss_conf 899999962299999999999999998-7999999998799989999999-99999998562699987----8---0121
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780172|r 328 NMFDLL 333 (386)
Q Consensus 328 g~~el~ 333 (386)
.++-+|
T Consensus 199 sLPGmM 204 (250)
T pfam03649 199 SLPGMM 204 (250)
T ss_pred CCCHHH
T ss_conf 264689
No 84
>TIGR01183 ntrB nitrate ABC transporter, permease protein; InterPro: IPR005889 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry comprises of the nitrate transport permease in bacteria, the gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016021 integral to membrane.
Probab=92.17 E-value=0.8 Score=23.84 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 88999789888876147228999999997664155887738799999999999899989999999984586678999996
Q gi|254780172|r 207 PVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSL 286 (386)
Q Consensus 207 ~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~al 286 (386)
+.+.....-..++.|-+|.+.++-.....+..--|..+ +--|..++-.+.++++ -|.+.+|+...+-+|.+
T Consensus 48 ~~~~~~ldP~~q~lr~~~PlaW~Pi~l~~~~~~~~~ai-fvifita~WPi~int~--------~G~~~~P~dy~nv~rvl 118 (203)
T TIGR01183 48 KLLNKALDPIFQVLRTVPPLAWLPIALAAFQDAQPAAI-FVIFITAIWPIIINTA--------VGVQQIPQDYNNVARVL 118 (203)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEE-EEHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_conf 99987420899999751534578899999841686313-1124877989998766--------66763117789999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 21689999999969989986200479999999612899999999999999997410100355136999999999999999
Q gi|254780172|r 287 GLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFC 366 (386)
Q Consensus 287 Gls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~ 366 (386)
-+|+.+-+..|++|.+++.+.-++- -.+++---.-.+.-+=..|+.+.+-.+-. .+......-+..+++|.-+.
T Consensus 119 ~ls~~~y~~~~~~P~~~Py~f~Gl~-i~~Gl~Wlai~aae~~~~~~~GiGffiWd-----ay~~~~~s~~ila~~y~G~v 192 (203)
T TIGR01183 119 KLSKSDYLLKVLLPAAVPYIFTGLR-IAIGLSWLAIVAAEMLIGGIVGIGFFIWD-----AYNSGSVSEIILAIIYVGLV 192 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHH-----HHHCCCHHHHHHHHHHHHHH
T ss_conf 9878888887775444568986589-99999999999999986054301243222-----23014304799999999999
No 85
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=86.29 E-value=1.1 Score=23.02 Aligned_cols=38 Identities=32% Similarity=0.365 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHH
Q ss_conf 99998999899999999845866789999962168999
Q gi|254780172|r 256 VSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQK 293 (386)
Q Consensus 256 l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~ 293 (386)
|--....|=-|.++.+|+.--=.|..||..|||||.|-
T Consensus 305 l~~~~~~~E~~ll~~AL~~~~fNQr~AAe~LGLtYHQl 342 (349)
T TIGR02974 305 LKQAVQDYEIELLQQALAEAQFNQRKAAELLGLTYHQL 342 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHH
T ss_conf 89999999999999999873034789998725736899
No 86
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=74.64 E-value=5.8 Score=18.66 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999875677544412786889997898888761472289-99999997664155887738799999999999
Q gi|254780172|r 181 LVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVT-VLFMASIMLPLFLPDTWDVDKLLRALLGVSAF 259 (386)
Q Consensus 181 l~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~-~lf~~~~~lp~~lp~g~~~~~~~~a~i~l~l~ 259 (386)
+.+++.+...|..+|+.-+..+--+.++++.+ .+-+-++|-+. -+-+..++=|. ..-++.+..+-
T Consensus 103 llvt~~a~l~g~~lGi~AG~t~gl~s~~lnHi----lDt~lSiPsLLlAiivvaf~gps----------l~namfA~~LA 168 (296)
T COG4171 103 LLVTLAATICGGVLGIFAGATHGLRSAVLNHI----LDTLLSIPSLLLAIIVVAFAGPS----------LSNAMFAVWLA 168 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHH
T ss_conf 99999999999999999977777899999999----99997358999999999960832----------88899999999
Q ss_pred HHHH-HHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999-8999999998458667899999621689999999969989986200479999999612899999999999999
Q gi|254780172|r 260 ASAY-IAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIV 336 (386)
Q Consensus 260 ~aAy-~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~el~~~~ 336 (386)
--.| +-+|.++--..+.|.-.-|++-=|-|....+.+.|+|.-... ++++-+-+..|.+.|+..-+
T Consensus 169 llPrfirsiY~avh~EleKeYViaarLdGas~~~lL~~~IlPNI~~~-----------~v~EitrAlsiAiLDI~ALg 235 (296)
T COG4171 169 LLPRFIRSIYSAVHDELEKEYVIAARLDGASTLNLLWFAILPNITAI-----------LVTEITRALSIAILDIAALG 235 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998877877765267661889999972512799-----------99999999999999888861
No 87
>pfam02954 HTH_8 Bacterial regulatory protein, Fis family.
Probab=72.81 E-value=5.3 Score=18.89 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=28.5
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999999998458667899999621689999999
Q gi|254780172|r 265 AEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386)
Q Consensus 265 aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386)
-+.+..+++.-.-.|.+||+.||+|+..-.+++
T Consensus 7 r~~I~~aL~~~~gn~~~aA~~LGisr~tL~~km 39 (42)
T pfam02954 7 KELIEAALERTGGNKSKAARLLGISRRTLYRKL 39 (42)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999949979999999796999999999
No 88
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein; InterPro: IPR014270 Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (IPR013424 from INTERPRO), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see IPR013426 from INTERPRO), recognises and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase ..
Probab=57.06 E-value=13 Score=16.54 Aligned_cols=190 Identities=23% Similarity=0.377 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 34689999988988513333574111111002478779999999999987567754441278688999789888876147
Q gi|254780172|r 144 NSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGV 223 (386)
Q Consensus 144 ~~l~~~~~~pil~~~Ll~gg~gl~~V~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~ 223 (386)
..+..+++.|++.. |.|....-|-......+..+.++.==-+.+.++..|--+. + +..|.+|-|+
T Consensus 21 ~~L~~~~I~PF~~~---------P~~~~~~~G~~~~~~~~~~~~L~A~P~~~~~~G~~~F~~~-----P-~~LI~LFYGV 85 (952)
T TIGR02921 21 LVLVYLLILPFVTL---------PLVLAAAIGLISIEFALALVLLVAVPALSIILGLTRFLKN-----P-VKLIKLFYGV 85 (952)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----H-HHHHHHHHHH
T ss_conf 99999888523467---------7899875141378999999999998899998634555205-----0-7777776201
Q ss_pred --CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH-----
Q ss_conf --2289999999976641558877387999999999998999899999999845866789999962168999999-----
Q gi|254780172|r 224 --PLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRL----- 296 (386)
Q Consensus 224 --Pli~~lf~~~~~lp~~lp~g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~----- 296 (386)
|++++...-.|++--+-| ......+.+.+.-+||.+|.+- |..+=-+ +|+...|....
T Consensus 86 E~P~~~~~L~~LFL~REL~P------~~~~~L~~~~~~~~Ay~~~L~~-G~~~R~~--------~GlqW~~l~~~~~ML~ 150 (952)
T TIGR02921 86 EAPLIVLMLLRLFLLRELTP------AVSQVLLTILVALAAYLAELFG-GVASRFK--------IGLQWLRLLLATLMLL 150 (952)
T ss_pred HHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHHHHC-CHHCCCH--------HHHHHHHHHHHHHHHH
T ss_conf 47899999988888761573------2789999999999999888751-1000103--------3389999999999999
Q ss_pred ------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------99699899862004799999996128999999999-99999997410100355136999999999999999999
Q gi|254780172|r 297 ------IIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFD-LLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSI 369 (386)
Q Consensus 297 ------IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~e-l~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~l 369 (386)
.+|- -..+|.-++-| .|...-.+-.++-+.. +++..-.+..=- -....+-+..+.+++|.++=+.+
T Consensus 151 ~G~Y~~~~L~---~y~~P~~~GfF-~L~~~~~l~~~~~~~Ny~Ly~~Al~~GLf---iismWlivla~~~~~F~~lP~~L 223 (952)
T TIGR02921 151 FGLYAALLLL---FYALPLAVGFF-LLLELVKLRHLIDLFNYLLYLVALVGGLF---IISMWLIVLAFSAVLFLLLPFVL 223 (952)
T ss_pred HHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999---99878899899-88755556456779999999999998899---99999999999999999989999
Q ss_pred H
Q ss_conf 9
Q gi|254780172|r 370 S 370 (386)
Q Consensus 370 s 370 (386)
+
T Consensus 224 T 224 (952)
T TIGR02921 224 T 224 (952)
T ss_pred H
T ss_conf 9
No 89
>pfam10265 DUF2217 Uncharacterized conserved protein (DUF2217). This is a family of conserved proteins of from 500 - 600 residues found from worms to humans. Its function is not known.
Probab=52.86 E-value=5.6 Score=18.77 Aligned_cols=56 Identities=14% Similarity=0.296 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHHH-HCC------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21689999999969989986-200------479999-99961289999999999999999741010
Q gi|254780172|r 287 GLSYLQKMRLIIMPQVIKRV-IPG------IVNTFI-GLFKDSSLISIINMFDLLGIVRVNFSEST 344 (386)
Q Consensus 287 Gls~~q~~~~IilPQAlr~~-iP~------l~n~~i-~l~KdTsL~~~Ig~~el~~~~~~~~~~~~ 344 (386)
-|+.+.+..--||=-|+.-. =|| +-|.++ .-||+|+|...+ .-++.+-+.....|+
T Consensus 373 ~~~FyDvvlDfilmDaFedLe~PPsSV~aV~~NrwLs~sfKEtal~Ta~--WSVLkaKR~~Lk~p~ 436 (515)
T pfam10265 373 CMNFYDIVLDFILMDAFEDLENPPSSVLAVVRNRWLSNSFKETALATAC--WSVLKAKRRMLKVPD 436 (515)
T ss_pred EEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCC
T ss_conf 6226899999999987764318938999999725666566788999999--999999998741982
No 90
>KOG3831 consensus
Probab=51.49 E-value=7.8 Score=17.90 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHH------EEEECHHHCCCHHHHHH
Q ss_conf 5047897985115562------25525111430568999
Q gi|254780172|r 92 NAACWAFIYDRYEQFI------FGNYPMAQRWRPILVFL 124 (386)
Q Consensus 92 ~GACWa~I~~~~~~~l------yG~YP~~e~WRv~la~i 124 (386)
.-|||.+|++|-++++ --||..+|+--|.+++.
T Consensus 92 ~t~~wsiikakrq~l~~pdgfia~fynise~v~paia~g 130 (196)
T KOG3831 92 ATACWSIIKAKRQLLKNPDGFIAHFYNISEHVMPAIAFG 130 (196)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999883098338898750564400888863
No 91
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=44.46 E-value=18 Score=15.72 Aligned_cols=20 Identities=35% Similarity=0.159 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCHHHHHHHHH
Q ss_conf 67899999621689999999
Q gi|254780172|r 278 GQFEAANSLGLSYLQKMRLI 297 (386)
Q Consensus 278 GQ~EAA~alGls~~q~~~~I 297 (386)
-|--|||.||||+.|+=..+
T Consensus 545 VQAKAARlLg~TPRQVgYal 564 (574)
T TIGR01817 545 VQAKAARLLGLTPRQVGYAL 564 (574)
T ss_pred HHHHHHHHHCCCHHHHHHHH
T ss_conf 79999997378655899999
No 92
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3; InterPro: IPR004709 Na^+/H^+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na^+/H^+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na^+ for H^+ in an electroneutral manner, and this activity is carried out by a family of Na^+/H^+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. In mammalian cells, Na^+/H^+ exchange activity is found in both the plasma membrane and inner mitochondrial membrane. To date, six mammalian isoforms have been identified (designated NHE1-NHE6) , . These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport . ; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane.
Probab=42.79 E-value=22 Score=15.18 Aligned_cols=156 Identities=21% Similarity=0.382 Sum_probs=83.5
Q ss_pred CCC-CCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHCC
Q ss_conf 111-11100247877999999-99999875677544412786889997898888761--47-228999999997664155
Q gi|254780172|r 167 SIV-ETSLWGGLLVTLVISFF-GIIISMPLGILLALGRNSNIPVLRYACITFIELFR--GV-PLVTVLFMASIMLPLFLP 241 (386)
Q Consensus 167 ~~V-~t~~~gGl~~Tl~l~~~-~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~R--g~-Pli~~lf~~~~~lp~~lp 241 (386)
+.+ -++-.+|..-=.+++.. |++.|.++|++.|+..|- ..-.| -+ |++ +++..| +-++..
T Consensus 199 e~~t~vdv~~G~~~fF~v~~G~G~L~Gv~~G~~~af~~rf------------t~~~rYP~IEP~f-vl~~sY--lsYL~a 263 (627)
T TIGR00840 199 EAVTIVDVVEGCVSFFVVTLGVGLLVGVVFGFLVAFITRF------------TKHIRYPVIEPLF-VLLISY--LSYLLA 263 (627)
T ss_pred CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------CCCCCCCCCCHHH-HHHHHH--HHHHHH
T ss_conf 5213320332454466664548899999999999999751------------0452046520489-999999--999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 88773879999999999989998999999998458667899999621689999999969989986200479999999612
Q gi|254780172|r 242 DTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDS 321 (386)
Q Consensus 242 ~g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdT 321 (386)
++..++..+ |++.-+..-.-|+.+++=- +.|+..+ -+-.++-+..-++|-++-.-
T Consensus 264 E~~hlSGIl-A~~~Cg~~m~~Yv~~N~S~-------------------~S~~Tik-----Y~~K~lsS~SEt~IFifLGv 318 (627)
T TIGR00840 264 ETLHLSGIL-ALIFCGITMKKYVEANISR-------------------ESETTIK-----YFMKMLSSLSETLIFIFLGV 318 (627)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHCH-------------------HHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_conf 778899999-9999899998888752133-------------------1378999-----99998877889999998724
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999999999999741010035513699999999999----9999999999999999843
Q gi|254780172|r 322 SLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVF----WIFCFSISLYSVFIEKTLH 381 (386)
Q Consensus 322 sL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY----~ii~~~ls~~~~~lE~rl~ 381 (386)
|++ ..+-.|+-+ ..++.+++.+ |.-.+++|++.+|+=|-+.
T Consensus 319 s~V---------------~~~~~w~w~----~~fv~~Tl~~C~aRWCavfPLsqfvnWiyR~~~ 363 (627)
T TIGR00840 319 SLV---------------SENHEWNWP----LAFVVVTLVFCVARWCAVFPLSQFVNWIYRVLG 363 (627)
T ss_pred HHC---------------CCCEEEEHH----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 200---------------561267302----899999999986335452226889999999999
No 93
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=42.26 E-value=23 Score=15.13 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 98999999998458667899999621689999999
Q gi|254780172|r 263 YIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386)
Q Consensus 263 y~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386)
.--+.++.+++.-.-.+.+||+.||+++..-+|++
T Consensus 405 ~Er~~I~~aL~~~~gn~~~aA~~LGisR~tLyrKl 439 (441)
T PRK10365 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 (441)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999939989999999788999999996
No 94
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=40.76 E-value=24 Score=14.98 Aligned_cols=37 Identities=35% Similarity=0.341 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 9998999999998458667899999621689999999
Q gi|254780172|r 261 SAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386)
Q Consensus 261 aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386)
..+--++++.+++--.-.|.+||+.||+|+..-++++
T Consensus 284 ~~~Ek~~I~~aL~~~~gn~~~aA~~LGIsR~tL~~kl 320 (325)
T PRK11608 284 HQQEKELLQRSLQQAKFNQKRAAELLGLTYHQFRALL 320 (325)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999939989999999888999999999
No 95
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane.
Probab=39.50 E-value=25 Score=14.87 Aligned_cols=63 Identities=30% Similarity=0.423 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 8799999999999---899989999999984586678999996216899999999699899862004799999996
Q gi|254780172|r 247 DKLLRALLGVSAF---ASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFK 319 (386)
Q Consensus 247 ~~~~~a~i~l~l~---~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~K 319 (386)
..+-++++.+... +..|.- ..++||-.+|||.+++.+.++ +.|||++-.++=++.=+.-..+|
T Consensus 163 ~N~~Kg~~lLl~sGiF~~GY~~------Y~~~a~PmHEAA~~~~vd~~~----~~LPq~iGm~iGg~i~~~~~~~~ 228 (336)
T TIGR00776 163 FNLKKGILLLLVSGIFTIGYLV------YVVVAKPMHEAAAALGVDGLS----VLLPQAIGMVIGGIIFNLKHCFK 228 (336)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH------HHHHCCCHHHHHHHHCCCHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5425789999998789999999------986066267888882455456----68434888877789987566688
No 96
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=36.80 E-value=24 Score=14.97 Aligned_cols=26 Identities=23% Similarity=0.006 Sum_probs=10.2
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02682789999999999999976654
Q gi|254780172|r 36 FFGTPKDILLTALIICLLLFSIPGII 61 (386)
Q Consensus 36 LFss~~NsilTLl~~~ll~~~i~~ll 61 (386)
||+.-++.=++++.+.+++.++-...
T Consensus 22 L~~~LW~~K~~II~~t~lf~~ia~~y 47 (348)
T PRK11638 22 LFRTLWAGKLWIIGMGLLFALIALAY 47 (348)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999835588999999999999999
No 97
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=36.61 E-value=28 Score=14.59 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999999998458667899999621689999999
Q gi|254780172|r 265 AEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386)
Q Consensus 265 aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386)
.+.+..+++.-.-.+.+||+.||+|+...+|++
T Consensus 593 r~~I~~aL~~~~gN~s~aA~~LGIsR~TLYRKl 625 (639)
T PRK11388 593 KQAIINAAQVCGGRIQEMAALLGIGRTTLWRKM 625 (639)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999949979999999898999999999
No 98
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=34.31 E-value=30 Score=14.37 Aligned_cols=37 Identities=22% Similarity=0.165 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 9998999999998458667899999621689999999
Q gi|254780172|r 261 SAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386)
Q Consensus 261 aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386)
..+--+++..++.--.--+.+||+.||+++..-+|++
T Consensus 427 ~~~Er~~I~~aL~~~~gn~~~aA~~LGisR~TLyrKl 463 (469)
T PRK10923 427 PELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 (469)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999909989999999898999999999
No 99
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=26.63 E-value=41 Score=13.57 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 998999999998458667899999621689999999
Q gi|254780172|r 262 AYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386)
Q Consensus 262 Ay~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386)
.+-.+.+..+++.-.-.+.+||+.||+++..-++++
T Consensus 416 ~~Er~~i~~aL~~~~gn~~~aA~~LGisR~tLyrKl 451 (457)
T PRK11361 416 RVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKL 451 (457)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999999829989999999898999999999
No 100
>TIGR01258 pgm_1 phosphoglycerate mutase 1 family; InterPro: IPR005952 Most members of this family are phosphoglycerate mutase (5.4.2.1 from EC). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. 2-phospho-D-glycerate + 2,3-diphosphoglycerate = 3-phospho-D-glycerate + 2,3-diphosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (5.4.2.4 from EC). ; GO: 0016868 intramolecular transferase activity phosphotransferases, 0006096 glycolysis.
Probab=26.56 E-value=9.4 Score=17.41 Aligned_cols=20 Identities=35% Similarity=0.513 Sum_probs=15.8
Q ss_pred CHHHHHHHHHCCCHHHHHHH
Q ss_conf 85899997302682789999
Q gi|254780172|r 27 GIIAWIHKNFFGTPKDILLT 46 (386)
Q Consensus 27 g~~~Wlr~NLFss~~NsilT 46 (386)
|-..|=++|+|.+|.|.=||
T Consensus 9 GeSeWN~~NlFTGW~Dv~L~ 28 (248)
T TIGR01258 9 GESEWNKENLFTGWVDVELT 28 (248)
T ss_pred CCCHHHHCCCCCCCEECCCC
T ss_conf 86322002575444417868
No 101
>pfam08209 Sgf11 Sgf11 (transcriptional regulation protein). The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae. The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation.
Probab=25.09 E-value=44 Score=13.40 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999984337899
Q gi|254780172|r 367 FSISLYSVFIEKTLHKGSKK 386 (386)
Q Consensus 367 ~~ls~~~~~lE~rl~~~~rR 386 (386)
..-+|++..|||=|++|.||
T Consensus 80 v~~~rfa~Hl~kCl~~g~rr 99 (99)
T pfam08209 80 VSGNRFAAHLQRCLSRGARR 99 (99)
T ss_pred HHHHHHHHHHHHHHHCCCCC
T ss_conf 45552399999998533479
No 102
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family; InterPro: IPR005360 Proteins in this entry are almost always found adjacent to a plasmid stabilisation protein (IPR007712 from INTERPRO), which is the killing partner of an addiction module for plasmid stabilisation. Proteins in this entry, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear to be chromosomal. A genome may contain several identical copies, for example four are found in Magnetococcus sp. MC-1. This entry is named after one member, CC2985 of Caulobacter crescentus CB15..
Probab=24.75 E-value=24 Score=14.95 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 8773879999999999989998999999998458667
Q gi|254780172|r 243 TWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQ 279 (386)
Q Consensus 243 g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ 279 (386)
|-.++.|....|.=+-|.+| +||||+||.....-+
T Consensus 7 g~~l~~Fi~~qv~sGRYgsa--SEVvR~aLRlLee~E 41 (77)
T TIGR02606 7 GEHLESFIDSQVQSGRYGSA--SEVVRAALRLLEERE 41 (77)
T ss_pred CHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHH
T ss_conf 87889999998760799986--369999998619999
No 103
>PRK08381 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=24.30 E-value=45 Score=13.31 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf 999999999999999999-9999999984
Q gi|254780172|r 353 TGLIFIGFVFWIFCFSIS-LYSVFIEKTL 380 (386)
Q Consensus 353 e~y~~~a~iY~ii~~~ls-~~~~~lE~rl 380 (386)
+.|+-++++|-.++|.-+ -++|++|||-
T Consensus 59 ~~~lDiAivyAlv~fvgtlaiaKy~err~ 87 (87)
T PRK08381 59 YYLIDIAIVLLMVNAVGGLIIAKYLERRA 87 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 15689999999999999999999998419
No 104
>TIGR02885 spore_sigF RNA polymerase sigma-F factor; InterPro: IPR014236 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . Members of this entry represent RNA polymerase sigma factor F. Within the Firmicutes, Sigma-F is specifically, and universally, a component of the endospore formation program, and is expressed in the forespore to turn on the expression of dozens of genes. It is closely related to sigma-G, which is also expressed in the forespore.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=23.85 E-value=37 Score=13.80 Aligned_cols=20 Identities=45% Similarity=0.478 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHCCHHHHHHH
Q ss_conf 86678999996216899999
Q gi|254780172|r 276 SKGQFEAANSLGLSYLQKMR 295 (386)
Q Consensus 276 p~GQ~EAA~alGls~~q~~~ 295 (386)
+|.|+|-|.-||.|.-|+=|
T Consensus 199 DkTQ~eVA~~LGISQVQVSR 218 (231)
T TIGR02885 199 DKTQTEVAKMLGISQVQVSR 218 (231)
T ss_pred CCHHHHHHHHCCCCCCHHHH
T ss_conf 00179999771857001227
No 105
>pfam03342 Rhabdo_M1 Rhabdovirus M1 matrix protein (M1 polymerase-associated protein).
Probab=22.24 E-value=50 Score=13.06 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=25.3
Q ss_pred HCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 45866789999962168999999996998998620
Q gi|254780172|r 274 SISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIP 308 (386)
Q Consensus 274 svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP 308 (386)
-.++.|..|.+|||+++.-+.-.+++-| ++..-|
T Consensus 146 ~LD~DQVk~eRALGF~rGy~tA~~v~~k-~k~~~P 179 (219)
T pfam03342 146 PLDKDQVKAERALGFGRGYRTALNVFNK-LKGTTP 179 (219)
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCH
T ss_conf 8988998899875313308999999988-627886
No 106
>TIGR00492 alr alanine racemase; InterPro: IPR000821 Alanine racemase catalyses the pyridoxal-dependent conversion of L-alanine into D-alanine, a key component of bacterial peptidoglycan . In Escherichia coli and Salmonella typhimurium, there are two alanine racemase isoforms, alr is a biosynthetic form required for cell wall formation; and dadB functions in L-alanine catabolism. By contrast with dadB and alr, both of which are monomeric enzymes, the alanine racemase of Bacillaceae are homodimers. In Pseudomonas putida, a broad-specificity amino acid racemase is structurally and functionally related to alanine racemase. The 3D-structure of the dimeric alanine racemase from Bacillus stearothermophilus has been determined to a resolution of 1.9 A . Each monomer comprises two domains, with an eight-stranded alpha/beta barrel at the N-terminus, and a C-terminal beta-strand domain. In the dimer, the mouth of the alpha/beta barrel of one monomer faces the second domain of the other monomer. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the barrel mouth and is covalently linked via an aldimine linkage to Lys39. Several other residues are involved in anchoring the PLP, for example, Arg219 forms a hydrogen bond with the pyridine nitrogen of the cofactor, which is assumed to influence electron delocalisation in PLP-alanine intermediates; Arg136 donates a hydrogen bond to the phenolic oxygen of PLP, and may be involved in substrate binding and stabilisation of intermediates; and Tyr265' is postulated to be a 2 proton donor to the carbanion intermediate .; GO: 0008784 alanine racemase activity, 0006522 alanine metabolic process.
Probab=21.96 E-value=25 Score=14.88 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=14.2
Q ss_pred HHHHHHHHHHEEEECHHH
Q ss_conf 798511556225525111
Q gi|254780172|r 98 FIYDRYEQFIFGNYPMAQ 115 (386)
Q Consensus 98 ~I~~~~~~~lyG~YP~~e 115 (386)
|=..|....|||.||.++
T Consensus 224 fd~vRpGIiLYG~~Ps~~ 241 (383)
T TIGR00492 224 FDMVRPGIILYGLYPSAD 241 (383)
T ss_pred EEEEECCHHHHCCCCCHH
T ss_conf 114421435321476200
No 107
>TIGR02968 succ_dehyd_anc succinate dehydrogenase, hydrophobic membrane anchor protein; InterPro: IPR014312 In Escherichia coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase (a TCA cycle enzyme) are SdhC and SdhD. This entry is the SdhD, the hydrophobic membrane anchor protein. SdhC is apocytochrome b558, which also plays a role in anchoring the complex..
Probab=21.33 E-value=52 Score=12.95 Aligned_cols=13 Identities=15% Similarity=0.417 Sum_probs=4.8
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 1002478779999
Q gi|254780172|r 172 SLWGGLLVTLVIS 184 (386)
Q Consensus 172 ~~~gGl~~Tl~l~ 184 (386)
+.|.++.-.-...
T Consensus 38 ~~w~~~f~~~~~~ 50 (105)
T TIGR02968 38 EAWRALFAHPWMK 50 (105)
T ss_pred HHHHHHHHCCHHH
T ss_conf 9999998664999
No 108
>pfam06850 PHB_depo_C PHB de-polymerase C-terminus. This family represents the C-terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=21.29 E-value=52 Score=12.95 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=18.8
Q ss_pred HHHHHHC-CHHHHHHHHHH--CCHHHHHHHHH
Q ss_conf 9999845-86678999996--21689999999
Q gi|254780172|r 269 RGGLQSI-SKGQFEAANSL--GLSYLQKMRLI 297 (386)
Q Consensus 269 Rggl~sv-p~GQ~EAA~al--Gls~~q~~~~I 297 (386)
.|....| ..||.+||..| |+...+...++
T Consensus 141 EGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~ 172 (203)
T pfam06850 141 EGENDDISGLGQTKAALDLCTGIPADRKAHHM 172 (203)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 26656667628899999986279999988870
No 109
>pfam07436 Curto_V3 Curtovirus V3 protein. This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=20.99 E-value=14 Score=16.45 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=13.5
Q ss_pred HHHHHHHCCHHHHHHHHH
Q ss_conf 999998458667899999
Q gi|254780172|r 268 LRGGLQSISKGQFEAANS 285 (386)
Q Consensus 268 ~Rggl~svp~GQ~EAA~a 285 (386)
=|.|+.+||.|--|++.|
T Consensus 70 rrrglsaipeg~ee~~ea 87 (87)
T pfam07436 70 RRRGLSAIPEGREEASEA 87 (87)
T ss_pred CCCCCCCCCCCCHHHCCC
T ss_conf 237765688761644029
No 110
>pfam12072 DUF3552 Domain of unknown function (DUF3552). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important.
Probab=20.98 E-value=53 Score=12.91 Aligned_cols=22 Identities=5% Similarity=0.504 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999998756775444
Q gi|254780172|r 180 TLVISFFGIIISMPLGILLALG 201 (386)
Q Consensus 180 Tl~l~~~~~~~~~~lG~llal~ 201 (386)
|++++++++++|+.+|.++.-.
T Consensus 2 ~Ii~~i~~~~iG~~~G~~~~~~ 23 (201)
T pfam12072 2 IIILAIIALVVGFAIGYFVRKS 23 (201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2399999999999999999999
No 111
>pfam04123 DUF373 Domain of unknown function (DUF373). Archaeal domain of unknown function. Predicted to be an integral membrane protein with six transmembrane regions.
Probab=20.11 E-value=55 Score=12.80 Aligned_cols=82 Identities=26% Similarity=0.382 Sum_probs=37.4
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH----------HHHHH
Q ss_conf 11143056899999999999740001112333468999998898851333357411111100247----------87799
Q gi|254780172|r 113 MAQRWRPILVFLTGSILLTPMLIPSFPRKFLNSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGL----------LVTLV 182 (386)
Q Consensus 113 ~~e~WRv~la~ill~vll~~~l~~~~~~k~~~~l~~~~~~pil~~~Ll~gg~gl~~V~t~~~gGl----------~~Tl~ 182 (386)
+|+.||....-..+++++...+..-.. +....+-.+..+++.+++.-|+|++..=.+.+.-+ .+|..
T Consensus 154 ~dp~~~~~~l~~pG~~lli~~l~~~~~---~~~~~~~~i~~~lG~y~l~kG~gid~~~~~~~~~~r~~l~~g~is~it~v 230 (344)
T pfam04123 154 SDPEYRRTFLGVPGLLLLIYGLLALAN---LPAYALGVILLILGLYLLYRGFGLDDFLRELLKRVRESLYEGRITFITYV 230 (344)
T ss_pred CCHHHHEEEEHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEHHHH
T ss_conf 382041014348679999999999957---70879999999999999999737999999999999998864737717999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999875677
Q gi|254780172|r 183 ISFFGIIISMPLGIL 197 (386)
Q Consensus 183 l~~~~~~~~~~lG~l 197 (386)
++.+.++.|.+.|..
T Consensus 231 va~~l~iigi~~g~~ 245 (344)
T pfam04123 231 VSIILILIGIIYGYL 245 (344)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
Done!