HHsearch alignment for GI: 254780172 and conserved domain: pfam00528
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.69 E-value=6.6e-15 Score=108.33 Aligned_cols=179 Identities=20% Similarity=0.286 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98756775444127868899978988887614722899999999766415588773879999999999989998999999
Q gi|254780172|r 191 SMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRG 270 (386)
Q Consensus 191 ~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~~a~i~l~l~~aAy~aEi~Rg 270 (386)
T Consensus 1 Gv~lG~~~a~---~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~---~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 73 (183)
T pfam00528 1 GIPLGIIAAL---RRGRRLDRLLRPLIDLLQALPSFVLAILLVV---ISIL-SILGHGILPAIILALLGWAGYARLIRRA 73 (183)
T ss_pred CHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9869999995---0785899999999999998349999999999---9842-3667899999999999999999999999
Q ss_pred HHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC
Q ss_conf 9984586678999996216899999999699899862004799999996128999999----999999999974101003
Q gi|254780172|r 271 GLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIIN----MFDLLGIVRVNFSESTWI 346 (386)
Q Consensus 271 gl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig----~~el~~~~~~~~~~~~~~ 346 (386)
T Consensus 74 ~l~~~~~~~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~~GlG~~~~~a~~~~d~---- 149 (183)
T pfam00528 74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDY---- 149 (183)
T ss_pred HHHHCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----
T ss_conf 9970689999999986998434129921898999999999999999999999999993689675999999997709----
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5513699999999999999999999999999984337899
Q gi|254780172|r 347 SSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGSKK 386 (386)
Q Consensus 347 ~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~rR 386 (386)
T Consensus 150 --~~~~~~~~~~~~~~~~~~~~----~d~l~~~ldpr~r~ 183 (183)
T pfam00528 150 --PEIQGPVLAAALILLLLNLL----VDILQRLLDPRVRK 183 (183)
T ss_pred --HHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCC
T ss_conf --99999999999999999999----99999873910178