RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780172|ref|YP_003064585.1| general L-amino acid transport
system permease protein [Candidatus Liberibacter asiaticus str. psy62]
(386 letters)
>gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease
component [Amino acid transport and metabolism].
Length = 222
Score = 174 bits (443), Expect = 3e-44
Identities = 75/212 (35%), Positives = 123/212 (58%), Gaps = 7/212 (3%)
Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMA 232
L GLLVTL+++ I++ + LG+LLAL R S LR+ ++E+FRG PL+ LF
Sbjct: 18 LLKGLLVTLLLTLLSIVLGLVLGLLLALMRLSGNKPLRWLARAYVEIFRGTPLLVQLFFI 77
Query: 233 SIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQ 292
L L ++D A++ +S + AY+AE++R G+QS+ KGQ+EAA +LGL+Y Q
Sbjct: 78 YFGLLPLLG--IELDPFTAAVIALSLNSGAYLAEIVRAGIQSVPKGQWEAARALGLTYWQ 135
Query: 293 KMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPT 352
MR +I+PQ ++ ++P + N FI L KD+SL+S+I + +L ++ + P
Sbjct: 136 TMRYVILPQALRVILPPLGNQFISLIKDTSLVSVIGVVELTRA-----AQIIAARTFRPF 190
Query: 353 TGLIFIGFVFWIFCFSISLYSVFIEKTLHKGS 384
+ ++ I C +SL S +E+ L +
Sbjct: 191 EVYLLAALIYLILCLPLSLLSRRLERRLARYG 222
>gnl|CDD|33942 COG4215, ArtQ, ABC-type arginine transport system, permease
component [Amino acid transport and metabolism].
Length = 230
Score = 104 bits (260), Expect = 5e-23
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 11/169 (6%)
Query: 176 GLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVP-LVTVLF---- 230
G LVTL ++ +I+ + LG+L ALG+ S +LR + + RGVP L+ +L
Sbjct: 13 GALVTLELAVCSLILGLLLGLLGALGKLSKNRLLRLLGNVYTTVIRGVPELLLILLIYFG 72
Query: 231 ------MASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAAN 284
+ + D+ + ++ + AY E LRG +++ KGQ EAA
Sbjct: 73 GQILLNTLADVTGALGVGFIDISPFVAGVIALGLIFGAYATETLRGAFKAVPKGQIEAAR 132
Query: 285 SLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLL 333
+LGLS Q R I++PQ+ + +PG+ N ++ L KD++L+S+I + DL+
Sbjct: 133 ALGLSRSQTFRRIVLPQMWRHALPGLGNLWLVLLKDTALVSLIGLNDLM 181
>gnl|CDD|33906 COG4160, ArtM, ABC-type arginine/histidine transport system,
permease component [Amino acid transport and
metabolism].
Length = 228
Score = 97.5 bits (243), Expect = 5e-21
Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMA 232
L GL TL + ++I L + LAL R S + + + +FRG PL+ LF+
Sbjct: 13 LLSGLATTLWLLIISLVIGFVLALPLALARVSKNRWVSWPARAYTYVFRGTPLLVQLFLI 72
Query: 233 SIMLPLFLP--DTWDVDKLLR-----ALLGVSAFASAYIAEVLRGGLQSISKGQFEAANS 285
L F ++ + LR A+L ++ +AY E+ RG ++++ +GQ+EAA +
Sbjct: 73 YYGLGQFEWIRESIFLWPFLREAWFCAVLALTLNTAAYTTEIFRGAIRAVPRGQWEAARA 132
Query: 286 LGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSES 343
LG+S + +R II+P ++R +P N I + K ++L S I + DL+G R+ S +
Sbjct: 133 LGMSRFKTLRRIILPSALRRALPAYSNEVILMLKSTALASTITVMDLMGYARLINSRT 190
>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette
(ABC) transporters which generally bind type 2 PBPs.
These types of transporters consist of a PBP, two TMs,
and two cytoplasmic ABC ATPase subunits, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. For these transporters the ABCs and TMs are on
independent polypeptide chains. These systems transport
a diverse range of substrates. Most are specific for a
single substrate or a group of related substrates;
however some transporters are more promiscuous,
transporting structurally diverse substrates such as the
histidine/lysine and arginine transporter in
Enterobacteriaceae. In the latter case, this is achieved
through binding different PBPs with different
specificities to the TMs. For other promiscuous
transporters such as the multiple-sugar transporter Msm
of Streptococcus mutans, the PBP has a wide substrate
specificity. These transporters include the
maltose-maltodextrin, phosphate and sulfate
transporters, among others..
Length = 190
Score = 86.6 bits (215), Expect = 1e-17
Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 5/195 (2%)
Query: 177 LLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIML 236
LL TL+++ ++++ LG+LL + L I+L +P + + + ++
Sbjct: 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF 60
Query: 237 PLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRL 296
+ L L AL+ + + + R L+SI K EAA +LG S Q R
Sbjct: 61 GVLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRR 120
Query: 297 IIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLI 356
II+P + ++ G+V F + +L+S + + G + G +
Sbjct: 121 IILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP-----GTGLLLIFAILFPGDL 175
Query: 357 FIGFVFWIFCFSISL 371
+ + +SL
Sbjct: 176 GVAAAVALILLLLSL 190
>gnl|CDD|34232 COG4597, BatB, ABC-type amino acid transport system, permease
component [Amino acid transport and metabolism].
Length = 397
Score = 71.1 bits (174), Expect = 4e-13
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 18/133 (13%)
Query: 218 ELFRGVPLVTVLFMASIMLPLFL---PDTWDVDKL---------------LRALLGVSAF 259
+ FR P VL + +L +L P T+DV L L +S +
Sbjct: 217 QQFRTWPTAAVLIIGLPLLAQWLFGAPLTFDVPALGGFNLTGGMVVIPEFAALFLALSFY 276
Query: 260 ASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFK 319
+A+IAE++R G+Q++SKGQ EAA SLGL +RL+I+PQ ++ +IP + + ++ L K
Sbjct: 277 TAAFIAEIVRAGIQAVSKGQTEAARSLGLRSSLTLRLVIVPQALRIIIPPLTSQYLNLTK 336
Query: 320 DSSLISIINMFDL 332
+SSL I DL
Sbjct: 337 NSSLAIAIGYPDL 349
Score = 48.8 bits (116), Expect = 2e-06
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 155 FSFFVLYGGLGLSIVET------------SLWGGLLVTLVISFFGIIISMPLGILLALGR 202
F L G G I +T + GLL TL+++ GII + +G L+ + R
Sbjct: 59 SGFAFLDGRAGFDIGQTLIAYTSDSTYGRAFIVGLLNTLLVAALGIITATIIGFLIGIAR 118
Query: 203 NSNIPVLRYACITFIELFRGVPLVTVLF 230
S+ ++R ++E+FR +P + +F
Sbjct: 119 LSDNWLIRKLSTVYVEIFRNIPPLLQIF 146
>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system
inner membrane component. The alignments cover the most
conserved region of the proteins, which is thought to be
located in a cytoplasmic loop between two transmembrane
domains. The members of this family have a variable
number of transmembrane helices.
Length = 183
Score = 54.2 bits (131), Expect = 6e-08
Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 11/189 (5%)
Query: 191 SMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLL 250
+PLGI+ AL R L I+L + +P VL + +++ + + L
Sbjct: 1 GIPLGIIAALRRGR---RLDRLLRPLIDLLQALPSF-VLAILLVVISILSILGHGI---L 53
Query: 251 RALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGI 310
A++ + Y + R L+S+ EAA +LG S Q R II+P + ++ G+
Sbjct: 54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGL 113
Query: 311 VNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGL-IFIGFVFWIFCFSI 369
F G + L+ + + LG++ E+ G + + + +
Sbjct: 114 ALAFGGALGGAVLLEFLGSWPGLGLL---LIEAILGYDYPEIQGPVLAAALILLLLNLLV 170
Query: 370 SLYSVFIEK 378
+ ++
Sbjct: 171 DILQRLLDP 179
>gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease
component [Inorganic ion transport and metabolism].
Length = 222
Score = 54.0 bits (130), Expect = 8e-08
Identities = 39/174 (22%), Positives = 80/174 (45%), Gaps = 6/174 (3%)
Query: 157 FFVLYGGLGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNI---PVLRYAC 213
FF + ++ + L + V + F +I +PLG+LL L + +L
Sbjct: 2 FFAMMSNDLWQLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRIL 61
Query: 214 ITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQ 273
+ + R +P + +L ++PL A++ ++ A+ ++A ++ L+
Sbjct: 62 SAIVNILRSIPFIILLV---ALIPLTRLIVGTSIGTTAAIVPLTIGAAPFVARLVESALR 118
Query: 274 SISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISII 327
+ KG EAA ++G S Q +R +++P+ + ++ GI T I L S++ I
Sbjct: 119 EVDKGVIEAAQAMGASPWQIIRKVLLPEALPGLVSGITVTLISLIGYSAMAGAI 172
>gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system,
permease component II [Amino acid transport and
metabolism].
Length = 267
Score = 48.2 bits (115), Expect = 3e-06
Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 4/151 (2%)
Query: 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVL 229
+ L L +L+I+ +++ LG L AL + +E +PLV
Sbjct: 60 DPRLLSALWNSLLIALLSALLATLLGTLAALALARYRFRGK----NLLEGLILLPLVVPD 115
Query: 230 FMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLS 289
+ I L L +L FA ++ V+ LQ + EAA LG S
Sbjct: 116 IVTGIALLLLFAALGLPGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGAS 175
Query: 290 YLQKMRLIIMPQVIKRVIPGIVNTFIGLFKD 320
Q R + +P ++ ++ G + F F +
Sbjct: 176 PWQTFRRVTLPLILPGILSGALLAFTLSFDE 206
>gnl|CDD|33437 COG3639, COG3639, ABC-type phosphate/phosphonate transport system,
permease component [Inorganic ion transport and
metabolism].
Length = 283
Score = 48.3 bits (115), Expect = 4e-06
Identities = 47/279 (16%), Positives = 93/279 (33%), Gaps = 19/279 (6%)
Query: 99 IYDRYEQFIFGNYPMAQRWRPILVFLTGSILLTPMLIPSFPRKFLNSILLFGLFPIFSFF 158
+ +L+ L I+ + F + +L G + F
Sbjct: 12 YSLESLMQNISQLKRDRSKFRLLILL--VIIALLVWSSWFFTEVDFPLLFIGGANQMADF 69
Query: 159 VLYG---GLGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNI---PVLRYA 212
L + LL TL I+F G +++ L I LA N+ + +
Sbjct: 70 FSDFFPPDFALFSQLPDILTALLQTLAIAFAGTLLAAILAIPLAFLAARNLSPKRWISFP 129
Query: 213 CITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGL 272
++ R +P L A + + F +L + + + ++ L
Sbjct: 130 VRRLLDFIRTIPE---LVWALLFVAAFGL------GPFAGVLALGIYTIGILGKLYAEAL 180
Query: 273 QSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDL 332
+SI G EA + G S LQ + ++PQ+ I + F + ++++ ++ +
Sbjct: 181 ESIDTGPGEALRATGASRLQLILFGVLPQIKPNFISYSLYRFESNIRAAAVLGLVGAGGI 240
Query: 333 LGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISL 371
+ + S W T L + V I S +
Sbjct: 241 GQRLMNSISLFQW--DKVATIILPILVLVILIDLISAKI 277
>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component
[Inorganic ion transport and metabolism].
Length = 540
Score = 46.8 bits (111), Expect = 9e-06
Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 5/189 (2%)
Query: 142 FLNSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALG 201
FL + L + L L + W LL +L+++ ++++ L +LLA
Sbjct: 300 FLILLPLLAVVLPSFVLNWGRPLSLVLASPQFWQALLNSLLLALAAALLAVVLALLLAYA 359
Query: 202 RNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFAS 261
L L VP V+ ++L PD L L+ V A+A
Sbjct: 360 VRRLRSRLSRLLERLSMLPLAVP--GVVLALGLLLLFRAPDGLLYQPLYTLLILVLAYAL 417
Query: 262 AYIAEVLR---GGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLF 318
++ +R L+ I EAA SLG S L++ R I +P + ++ F
Sbjct: 418 RFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLLAAAALVFALSI 477
Query: 319 KDSSLISII 327
+ S ++
Sbjct: 478 GELSATLLL 486
Score = 37.9 bits (88), Expect = 0.005
Identities = 45/214 (21%), Positives = 75/214 (35%), Gaps = 44/214 (20%)
Query: 146 ILLFGLFPIFSFFVLYGGLGLS--------IVETSLWGGLLVTLVISFFGIIISMPLGIL 197
+ LF P+ + F LG + + LW L TL+++ ++S+ LGI
Sbjct: 19 VALFVALPLLAVFAAALSLGGGAFDALAAVLSDPYLWRVLANTLILAVLVTLLSVVLGIP 78
Query: 198 LALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLP--------DTWDVDKL 249
LA + RY F G L+ L +++P F+
Sbjct: 79 LAWL------LSRYD-------FPGRRLLRWLLALPLVIPPFVVALAWISLFGPSGPLAA 125
Query: 250 LRALLGVSA---------------FASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKM 294
L LLG + F ++ L++I EAA +LG S Q
Sbjct: 126 LLELLGFESPSIYGLGGILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLGASRWQVF 185
Query: 295 RLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIIN 328
R + +P + + G + F+ D I+
Sbjct: 186 RKVTLPLLRPAIAAGALLVFMLCLADFGTPLILG 219
>gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease
component [Posttranslational modification, protein
turnover, chaperones].
Length = 274
Score = 42.9 bits (101), Expect = 2e-04
Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 21/186 (11%)
Query: 146 ILLFGLFPIFSFFVLYGGLGLS-----IVETSLWGGLLVTLVISFFGIIISMPLGILLAL 200
+LL L P+ + LG + + + L +TL+ +F ++++ G+ LA
Sbjct: 23 LLLILLLPLSALVTKSSSLGWAGFWSALTSPRVLAALKLTLLTAFAATLLNLVFGLPLAW 82
Query: 201 GRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAF- 259
+ + ++ +P +A I L L + LL L AF
Sbjct: 83 ----VLVRYDFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGLLGSLLAPLGIKFAFT 138
Query: 260 -----------ASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIP 308
+ ++ ++ L+ I + EAA SLG S LQ R +I+P ++ ++
Sbjct: 139 PLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGASPLQTFRRVILPLLLPALLA 198
Query: 309 GIVNTF 314
G + +F
Sbjct: 199 GFILSF 204
>gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 310
Score = 41.0 bits (96), Expect = 5e-04
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 172 SLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIP--VLRYACITFIELFRGVPLVTVL 229
+ TL+ S ++I++P+GI A+ + P LR IEL G+P V
Sbjct: 76 GALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYG 135
Query: 230 FMASIMLPLFLPDTWDV----------DKLLRALLGVSAFASAYIAEVLRGGLQSISKGQ 279
F +L FL D + +L A + ++ IA + R L+++ +
Sbjct: 136 FFGLFVLAPFLRDVFGPPLGFNLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSL 195
Query: 280 FEAANSLGLSYLQKMRLIIMPQVIKRVIPGIV 311
EAA +LG + + +R +I+P ++ ++
Sbjct: 196 REAAYALGATKWETIRKVILPAARSGIVGAVI 227
>gnl|CDD|31368 COG1175, UgpA, ABC-type sugar transport systems, permease
components [Carbohydrate transport and metabolism].
Length = 295
Score = 39.8 bits (93), Expect = 0.001
Identities = 52/235 (22%), Positives = 87/235 (37%), Gaps = 26/235 (11%)
Query: 115 QRWRPILVFLTGSILLTPMLIPSFPRKFLNSILLFGLFPIFSFFVLYGGLGLSIVETSLW 174
+R P L+ +LL + S + L S FV + + W
Sbjct: 8 RRLLPYLLLAPALLLLLVFFLYPLILTLYLSFTNYDLLGPPSTFVGLANYERLFSDPTFW 67
Query: 175 GGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASI 234
L TLV + + + + LG+LLAL N + + F +P +A +
Sbjct: 68 NALKNTLVFTVISVPLQLVLGLLLALLLNRKLRGRGFFRTLFF-----LPWAISSVVAGL 122
Query: 235 MLPLFLPDTWDVDKLLRALLGV-----------SAFASAYIAEVLRG----------GLQ 273
+ ++ + L LLG+ +A + I V +G GLQ
Sbjct: 123 IWKWLFNPSFGLLNSLLLLLGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQ 182
Query: 274 SISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIIN 328
SI K +EAA G S Q+ R I +P + + ++ I F+ LI ++
Sbjct: 183 SIPKELYEAARIDGASPWQRFRKITLPLLRPVIFFVLILRTIFAFQVFDLIYLLT 237
>gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 292
Score = 35.9 bits (83), Expect = 0.016
Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 14/196 (7%)
Query: 120 ILVFLTGSILLTPMLIPSFPRKFLNSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGLLV 179
LVFL ++ L P+L L +IL+ G+ + + G E G +V
Sbjct: 21 GLVFLAAAVALLPLLW------ILWTILIRGIPALSLNLEFFTGSPSPPGEGGGIGPAIV 74
Query: 180 -TLVISFFGIIISMPLGILLA--LGRNSNIPVLRYACITFIELFRGVPLVTV-LFMASIM 235
TL + I+I +PLGI L + L I++ VP + LF
Sbjct: 75 GTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGLFGLGFF 134
Query: 236 LPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMR 295
+ L L ++ + L+++ EAA +LG + Q +
Sbjct: 135 VVTLGFGF----SALAGALALALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQTIF 190
Query: 296 LIIMPQVIKRVIPGIV 311
+++P + +I G++
Sbjct: 191 KVVLPAALPGIITGVI 206
>gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism].
Length = 258
Score = 33.6 bits (77), Expect = 0.093
Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 12/148 (8%)
Query: 164 LGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGV 223
L + L+ LL +L+ G ++ LGI L + + +L +++ R +
Sbjct: 50 LVELLASGELFQHLLASLLRVLLGFALAAVLGIPLGILMGLS-RLLERLLDPLVQVLRPI 108
Query: 224 PLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAY-IAEVLRGGLQSISKGQFEA 282
P + + +A + + + + ++ + + I G++S+ E
Sbjct: 109 PPLALAPLAILWFGIGET----------SKIVIAVLGAFFPILINTLDGVRSVDPDLLEL 158
Query: 283 ANSLGLSYLQKMRLIIMPQVIKRVIPGI 310
A +LG S Q +R +I+P + + G+
Sbjct: 159 ARTLGASRWQILRKVILPAALPYIFTGL 186
>gnl|CDD|34591 COG4986, COG4986, ABC-type anion transport system, duplicated
permease component [Inorganic ion transport and
metabolism].
Length = 523
Score = 33.4 bits (76), Expect = 0.11
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 9/155 (5%)
Query: 166 LSIVETSLWGGLLVTLVISFFGIIISM-PLGILLALGRNSNIPVLRYACITFIELFRGVP 224
+S V SLWG L+ ++ + ++LAL +I + + G P
Sbjct: 297 ISSVPESLWGALVSETPAVLLYLLYDYLRVVVILALSFLISIFLGYSIALRPRVEGIGQP 356
Query: 225 LVTVL--FMASIMLPLFLPDT----WDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKG 278
L+ L F A I PL + L L + F YI + G +++
Sbjct: 357 LIQFLAAFPAPIYFPLLFAAIKTFILTPEIWLSPLGFIGTFY--YIFYNVIAGAKALPVE 414
Query: 279 QFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNT 313
FEAA + L K R II+P +I G+ T
Sbjct: 415 YFEAAKNYNLGGWAKWRRIILPGTFPYLITGLSTT 449
>gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 289
Score = 32.5 bits (74), Expect = 0.18
Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 16/215 (7%)
Query: 105 QFIFGNYPMAQRWRPILVFLTGSILLTPMLIPSFPRKFLNSILLFGLFPIFSFFVLYG-- 162
+A IL+ L + P++ P P L L P S+ G
Sbjct: 15 YRRLDLNKLAILGLIILLLLVLLAIFAPLIAPYDPLDLD---LGARLLPPGSWAHWLGTD 71
Query: 163 GLGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRG 222
LG I+ + L G ++L+I ++IS+ +G LL L + + ++F
Sbjct: 72 NLGRDIL-SRLLYGARISLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMRITDIFLA 130
Query: 223 VPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQF-E 281
P + + + +L LL +L ++ A ++RG + S+ + ++ E
Sbjct: 131 FPSLLLAILLVAILGPG---------LLNLILALALVGWPGYARIVRGQVLSLREREYVE 181
Query: 282 AANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIG 316
AA +LG S L+ + I+P V+ +I G
Sbjct: 182 AARALGASTLRIIFRHILPNVLPPLIVLATLDIGG 216
>gnl|CDD|32723 COG2898, COG2898, Uncharacterized conserved protein [Function
unknown].
Length = 538
Score = 32.5 bits (74), Expect = 0.22
Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 9/135 (6%)
Query: 112 PMAQRWRPILVFLTGSILLTPMLIPSFP--RKFLNSILLFGLFPIFSFFVLYGGLGLSIV 169
+ + ILVFL+G ILL PS + L I+ L G L ++
Sbjct: 11 LLVPQILAILVFLSGVILLFSGATPSLDERLRLLPRIVPLPLIEASHLTASLLGALLLLL 70
Query: 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELF---RGVPLV 226
L +I+ + LG++L+L + + + L R
Sbjct: 71 ARGLR---KRLKRAWIAALIVLI-LGLVLSLAKGLAWIEAAVLFLIAVLLLAGRRAFYRK 126
Query: 227 TVLFMASIMLPLFLP 241
++L + SI
Sbjct: 127 SLLLVQSISPGWLAA 141
>gnl|CDD|33626 COG3833, MalG, ABC-type maltose transport systems, permease
component [Carbohydrate transport and metabolism].
Length = 282
Score = 32.4 bits (74), Expect = 0.24
Identities = 40/184 (21%), Positives = 66/184 (35%), Gaps = 5/184 (2%)
Query: 144 NSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRN 203
NS L P Y L + L +L+++ I++ L L A +
Sbjct: 43 NSATGSSLIPKNITLDNYKLL-FTGPPFPYLLWLWNSLIVALITAAITVALVTLAAYAFS 101
Query: 204 SNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAY 263
R + F + + P A I L + L ++ L +L A
Sbjct: 102 RYRFKGRKYLLKFFLILQMFPG----VAALIALYVLLKLLGLLNTLWGLILAYLGGAIPM 157
Query: 264 IAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSL 323
+++G +I K EAA G + Q R I++P + + FIG F D L
Sbjct: 158 NTWLIKGYFDTIPKSLDEAAKIDGATRFQIFRRILLPLSKPILAVVALLAFIGPFGDFIL 217
Query: 324 ISII 327
S++
Sbjct: 218 ASLL 221
>gnl|CDD|33901 COG4149, ModC, ABC-type molybdate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 225
Score = 30.9 bits (70), Expect = 0.60
Identities = 39/174 (22%), Positives = 66/174 (37%), Gaps = 49/174 (28%)
Query: 170 ETSLWGGLLVTLVISFFGIIISMPLGILLA--LGRNSNIPVLRYACITFIELFRGVPLVT 227
LL++L ++ ++ +PLGI LA L R FRG L+
Sbjct: 2 TPEELTALLLSLKVALISTLLLLPLGIALAYLLARRR---------------FRGKSLLE 46
Query: 228 VLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEV-------------------- 267
L ++LPL LP + LL L G + F ++ +
Sbjct: 47 SL----VLLPLVLPPVV-LGFLLLVLFGRNGFIGQFLEDWFGLSLAFSWQGAVLASVVVS 101
Query: 268 -------LRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTF 314
LR ++I + EAA +LG S + I +P + ++ G++ +F
Sbjct: 102 LPLMVRPLRLAFEAIDRELEEAARTLGASRWEVFFRITLPLALPGILAGVILSF 155
>gnl|CDD|34280 COG4662, TupA, ABC-type tungstate transport system, periplasmic
component [Coenzyme metabolism].
Length = 227
Score = 30.2 bits (68), Expect = 1.0
Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 18/143 (12%)
Query: 166 LSIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPL 225
L ++ L G + TL +S I ++ +G+ LA + I +P
Sbjct: 14 LFSLDPELIGIVATTLYVSLISIFLAALVGVPLAFVLALREFRGKRFIKMIINTLLSMPT 73
Query: 226 VTVLFMASIMLP----------LFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSI 275
V V + ++L LF D + + + L V AF L+S+
Sbjct: 74 VLVGLLLYLLLSRSGPLGWFNLLFTQDAMILGQAILILPLVIAFVL--------TALESV 125
Query: 276 SKGQFEAANSLGLSYLQKMRLII 298
E A SLG S L+ +
Sbjct: 126 DPRLKELARSLGASPLKLASTVF 148
>gnl|CDD|31367 COG1174, OpuBB, ABC-type proline/glycine betaine transport systems,
permease component [Amino acid transport and
metabolism].
Length = 221
Score = 29.0 bits (65), Expect = 2.1
Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLF 230
LL+ L+ I+I +PLGIL+ R L + + + +P + +L
Sbjct: 26 ALTLQHLLLVLLAVLIAILIGVPLGILVTRSRR-----LAGLVLGVANVLQTIPSLALLA 80
Query: 231 MASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSY 290
+ +L + L A++ + ++ I GL S+ EAA +G++
Sbjct: 81 LLIPVLGI---------GLTPAIIALFLYSLLPIVRNTYTGLASVPPSVIEAARGMGMTR 131
Query: 291 LQKMRLIIMPQVIKRVIPGI 310
Q++ + +P + ++ GI
Sbjct: 132 WQRLLKVELPLALPVILAGI 151
>gnl|CDD|144389 pfam00771, FHIPEP, FHIPEP family.
Length = 658
Score = 28.9 bits (66), Expect = 2.1
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 32 IHKNFFGTPKDILLTALIICLLLFSIPGIIHWVFL 66
I F PK + + A ++ LL +PG+ FL
Sbjct: 249 IVGQLFANPKALYIAAGVLLLLGL-VPGMPTLPFL 282
>gnl|CDD|30744 COG0395, UgpE, ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism].
Length = 281
Score = 29.0 bits (65), Expect = 2.2
Identities = 46/222 (20%), Positives = 79/222 (35%), Gaps = 36/222 (16%)
Query: 112 PMAQRWRPILVFLTGSILLTP---MLIPSF-PRKFLNSILLFGLFPIFSFFVLYGGL--G 165
+ + +L+ L + L P M++ SF P + S L+P Y + G
Sbjct: 8 KIRKILLYLLLILVALLFLFPLYWMILTSFKPSAEIFSGPPPSLWPSSFTLENYRTVFSG 67
Query: 166 LSIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPL 225
L+V + + +++S LA R F+G L
Sbjct: 68 GPGFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFR-----------------FKGRKL 110
Query: 226 VTVLFMASIMLP---------LFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSIS 276
+ +L + ++MLP L + ++ +L AF + +LR ++I
Sbjct: 111 LFLLLLLTLMLPAQVLLIPLYLLMRKLGLLNTYWGLILPYLAFGLPFAIFLLRQFFRTIP 170
Query: 277 KGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLF 318
K EAA G S Q I++P PG+ I F
Sbjct: 171 KELEEAARIDGASEFQIFFKIVLPL----AKPGLAAVAIFTF 208
>gnl|CDD|31488 COG1297, COG1297, Predicted membrane protein [Function unknown].
Length = 624
Score = 27.9 bits (62), Expect = 4.4
Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 21/175 (12%)
Query: 146 ILLFGLFPIFSFFVLYGGLGLSIVETSLWGGLLV-TLVISFFGIIISMPLGILLALGRNS 204
+L+ + +L L + + + W ++V L+ G +++ G + L +S
Sbjct: 319 LLVLLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSS 378
Query: 205 NIPVLRYACITFIELFRGVPLVTVLFMASIMLPL----FLPDTWDVDKLLRALLGVSAFA 260
+ P+ G+ +++V ++ ++L L L + K L A +A
Sbjct: 379 SSPIS------------GIGILSVTLLSLLILILGQSGGLFIDPLMRKFLVAATLFTASV 426
Query: 261 SAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFI 315
A +A + LQ + G A + Q++ LII V VI ++
Sbjct: 427 VAAVAAISNDNLQDLKTGYLVGAT----PWKQQVALIIGCFVGALVIAPVLELLN 477
>gnl|CDD|30946 COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 317
Score = 28.1 bits (63), Expect = 4.5
Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 13/175 (7%)
Query: 166 LSIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNI-PVLRYACITFIELFRGVP 224
++ L L + LV +++ +PLGIL AL R S I +LR + I +
Sbjct: 88 ADLILERLPATLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIPSFWL 147
Query: 225 LVTVLFMASIMLPLF----LPDTWDVDKLLRAL-------LGVSAFASAYIAEVLRGG-L 272
+ ++ + S+ L D L AL L + + A IA + R L
Sbjct: 148 GLLLILLFSVKLGWLPVGGRGSAGSWDSFLDALKHLILPALTLGLVSLAGIARLTRSSML 207
Query: 273 QSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISII 327
+ +++ A + GLS + + + + VI + GL + ++ +
Sbjct: 208 EVLNQDYVRTARAKGLSERRILFKHALRNALLPVITVLGLQLGGLLGGAVVVETV 262
>gnl|CDD|37303 KOG2092, KOG2092, KOG2092, Uncharacterized conserved protein
[Function unknown].
Length = 381
Score = 27.7 bits (61), Expect = 5.0
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 98 FIYDRYEQFIFGNYPMAQRWRPILVFLTGSILLTPMLIPSFPRKFLNSILLFGLFPIFSF 157
F+++ Y++ + + W L L TP+ FPR+FLN L +F I+ F
Sbjct: 157 FLFEFYDEQLEAFMVLVLVWLCELFTL--DSERTPISKKFFPREFLND-LYELVFHIYFF 213
Query: 158 FVLYG 162
YG
Sbjct: 214 SYAYG 218
>gnl|CDD|35556 KOG0335, KOG0335, KOG0335, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 482
Score = 27.6 bits (61), Expect = 6.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 1 MIDSCKEFPYVRKRLLQPSLPPVYQR 26
M+D P +RK + Q +PP R
Sbjct: 238 MLDEMGFEPQIRKIVEQLGMPPKNNR 263
>gnl|CDD|164564 CHL00187, cysT, sulfate transport protein; Provisional.
Length = 237
Score = 27.3 bits (61), Expect = 6.6
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 272 LQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTF 314
LQ I K EAA SLG S Q +I P +I ++ G+ TF
Sbjct: 160 LQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTF 202
>gnl|CDD|145102 pfam01768, Birna_VP4, Birnavirus VP4 protein. VP4 is a viral
protease. The large RNA segment of birnaviruses codes
for a polyprotein (N-VP2-VP4-VP3-C).
Length = 264
Score = 27.6 bits (61), Expect = 6.7
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 223 VPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEA 282
VP+++ LF P+ P D+ + LLG +A Y++ G + +S+
Sbjct: 3 VPVLSTLF------PMAAPLIGAADQFIGDLLGDNASGGRYVSHAASGRYRDVSRRWRSG 56
Query: 283 ANSLGLSYLQKMRLIIMPQ 301
+ + SY K RL
Sbjct: 57 SLTGDKSYSLKSRLGEEHW 75
>gnl|CDD|34228 COG4590, COG4590, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 733
Score = 27.3 bits (60), Expect = 7.8
Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 37/121 (30%)
Query: 180 TLVISFFGIIISMPLGILLALGRNSNI-PVLRYACITFIELFRGVPLVTVLFMASIMLPL 238
TL + + ++ +MPL + A+ + P +R IEL +P V + F+A + L
Sbjct: 435 TLKAAAYAMLFAMPLAVAGAIYTAYFMTPSMRRVVKPTIELMEALPTVIIGFLAGLWLAP 494
Query: 239 F------------------------------------LPDTWDVDKLLRALLGVSAFASA 262
F LP W L+ LLG+ A A
Sbjct: 495 FVESHLPGVLALMLLLPLSILLLGFIWSRLPKAWLRRLPAGWHALILIPVLLGIGALALW 554
Query: 263 Y 263
Sbjct: 555 L 555
>gnl|CDD|176741 cd08327, CARD_RAIDD, Caspase activation and recruitment domain of
RIP-associated ICH-1 homologous protein with a death
domain. Caspase activation and recruitment domain
(CARD) of RAIDD (RIP-associated ICH-1 homologous
protein with a death domain), also known as CRADD
(Caspase and RIP adaptor). RAIDD is an adaptor protein
that together with the p53-inducible protein PIDD and
caspase-2, forms the PIDDosome complex, which is
required for caspase-2 activation and plays a role in
mediating stress-induced apoptosis. RAIDD contains an
N-terminal CARD, which interacts with the caspase-2
CARD, and a C-terminal Death domain (DD), which
interacts with the DD of PIDD. In general, CARDs are
DDs associated with caspases. They are known to be
important in the signaling pathways for apoptosis,
inflammation and host-defense mechanisms. DDs are
protein-protein interaction domains found in a variety
of domain architectures. Their common feature is that
they form homodimers by self-association or
heterodimers by associating with other members of the
DD superfamily including PYRIN and DED (Death Effector
Domain). They serve as adaptors in signaling pathways
and can recruit other proteins into signaling
complexes.
Length = 94
Score = 27.1 bits (60), Expect = 9.1
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 2 IDSCKEFPYVRKRLLQ 17
+DS +EFP+VR +LL+
Sbjct: 73 LDSLEEFPWVRDKLLK 88
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.331 0.147 0.466
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,134,201
Number of extensions: 306050
Number of successful extensions: 1642
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1568
Number of HSP's successfully gapped: 269
Length of query: 386
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 290
Effective length of database: 4,189,273
Effective search space: 1214889170
Effective search space used: 1214889170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.1 bits)