RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62] (386 letters) >d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Length = 203 Score = 58.6 bits (141), Expect = 9e-10 Identities = 41/191 (21%), Positives = 81/191 (42%), Gaps = 6/191 (3%) Query: 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNI---PVLRYACITFIELFRGVPLVT 227 +W L +T V FFG +I +P+G+LL + R I L + +FR +P + Sbjct: 6 RGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFII 65 Query: 228 VLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLG 287 +L + L A++ ++ A+ +IA ++ L I G EA+ ++G Sbjct: 66 LLVWMIPFTRVI---VGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 122 Query: 288 LSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWIS 347 + +Q +R +++P+ + ++ T I L S++ + L I + Sbjct: 123 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNAT 182 Query: 348 SVTPTTGLIFI 358 + L+ I Sbjct: 183 VMNTVLVLLVI 193 >d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} Length = 244 Score = 37.6 bits (86), Expect = 0.002 Identities = 27/173 (15%), Positives = 61/173 (35%), Gaps = 16/173 (9%) Query: 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLF 230 + T+V S + +++ +G++LA + + L VP + Sbjct: 15 KPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISIL 74 Query: 231 MASIMLPLFLPDTWDVDKLLRAL----------------LGVSAFASAYIAEVLRGGLQS 274 + + + + L + + + Y+ + G L++ Sbjct: 75 IFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKA 134 Query: 275 ISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISII 327 I +EA+ G Q I +P +IK + P ++ +F F + LI ++ Sbjct: 135 IPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLL 187 >d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 248 Score = 29.9 bits (66), Expect = 0.34 Identities = 36/231 (15%), Positives = 79/231 (34%), Gaps = 7/231 (3%) Query: 142 FLNSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALG 201 FL L + GL + S+ + ++L F ++++ LG Sbjct: 14 FLFIFLTLSNMIFEQITEDFSGLVKAAGNRSVISSIFLSLYAGFLATLLALLLGAPTGYI 73 Query: 202 -------RNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALL 254 + + + G+ L+TV ++ D L ++ Sbjct: 74 LARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLESYIQFRDALPGIVV 133 Query: 255 GVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTF 314 + + Y+A R G +S+ AA SLG + + +P + ++ G V T+ Sbjct: 134 AMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTW 193 Query: 315 IGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIF 365 + + I+ + ++G + ++ S + ++ I IF Sbjct: 194 ARAISEFGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAVLLILVTLSIF 244 >d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]} Length = 174 Score = 28.9 bits (65), Expect = 0.72 Identities = 10/29 (34%), Positives = 13/29 (44%) Query: 169 VETSLWGGLLVTLVISFFGIIISMPLGIL 197 ET + G LV F I+ LGI+ Sbjct: 121 TETIIAGNAATALVALVFSILTGSALGII 149 >d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 252 Score = 26.5 bits (57), Expect = 3.5 Identities = 35/229 (15%), Positives = 78/229 (34%), Gaps = 9/229 (3%) Query: 146 ILLFGLFPIFSFFVL----YGGLGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALG 201 ILLF L P+ + L + + + ++W +L T + +I++ G LA Sbjct: 16 ILLFVLLPVAATVTLQLFNFDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYI 75 Query: 202 RNSNIPVLRYACITFIELFRGVPLVTV-----LFMASIMLPLFLPDTWDVDKLLRALLGV 256 + ++L +P + S L VD L ++ + Sbjct: 76 LARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSPLKFVDALPGIVVAM 135 Query: 257 SAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIG 316 + + G S+ A +LG S L+ + +P ++ ++ G + ++ Sbjct: 136 LFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWAR 195 Query: 317 LFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIF 365 + + +I + ++ + + S I I +F Sbjct: 196 GISEFGAVVVIAYYPMIAPTLIYERYLSEGLSAAMPVAAILILLSLAVF 244 >d1gr0a2 d.81.1.3 (A:201-311) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 111 Score = 25.1 bits (55), Expect = 9.1 Identities = 6/18 (33%), Positives = 9/18 (50%) Query: 96 WAFIYDRYEQFIFGNYPM 113 + Y R E FG+ P+ Sbjct: 83 RKWAYVRLEGRAFGDVPL 100 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.331 0.147 0.466 Gapped Lambda K H 0.267 0.0522 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,497,636 Number of extensions: 71332 Number of successful extensions: 241 Number of sequences better than 10.0: 1 Number of HSP's gapped: 233 Number of HSP's successfully gapped: 17 Length of query: 386 Length of database: 2,407,596 Length adjustment: 87 Effective length of query: 299 Effective length of database: 1,213,086 Effective search space: 362712714 Effective search space used: 362712714 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 54 (25.1 bits)