RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780172|ref|YP_003064585.1| general L-amino acid transport
system permease protein [Candidatus Liberibacter asiaticus str. psy62]
         (386 letters)



>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease
           protein MetI {Escherichia coli [TaxId: 562]}
          Length = 203

 Score = 58.6 bits (141), Expect = 9e-10
 Identities = 41/191 (21%), Positives = 81/191 (42%), Gaps = 6/191 (3%)

Query: 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNI---PVLRYACITFIELFRGVPLVT 227
             +W  L +T V  FFG +I +P+G+LL + R   I     L       + +FR +P + 
Sbjct: 6   RGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFII 65

Query: 228 VLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLG 287
           +L        +          L  A++ ++  A+ +IA ++   L  I  G  EA+ ++G
Sbjct: 66  LLVWMIPFTRVI---VGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 122

Query: 288 LSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWIS 347
            + +Q +R +++P+ +  ++     T I L   S++   +    L  I           +
Sbjct: 123 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNAT 182

Query: 348 SVTPTTGLIFI 358
            +     L+ I
Sbjct: 183 VMNTVLVLLVI 193


>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease
           protein MalF {Escherichia coli [TaxId: 562]}
          Length = 244

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 27/173 (15%), Positives = 61/173 (35%), Gaps = 16/173 (9%)

Query: 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLF 230
                  + T+V S   + +++ +G++LA          +      + L   VP    + 
Sbjct: 15  KPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISIL 74

Query: 231 MASIMLPLFLPDTWDVDKLLRAL----------------LGVSAFASAYIAEVLRGGLQS 274
           +   +      +   +   L  +                +  +     Y+  +  G L++
Sbjct: 75  IFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKA 134

Query: 275 ISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISII 327
           I    +EA+   G    Q    I +P +IK + P ++ +F   F +  LI ++
Sbjct: 135 IPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLL 187


>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter,
           permease protein {Methanosarcina acetivorans [TaxId:
           2214]}
          Length = 248

 Score = 29.9 bits (66), Expect = 0.34
 Identities = 36/231 (15%), Positives = 79/231 (34%), Gaps = 7/231 (3%)

Query: 142 FLNSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALG 201
           FL   L             + GL  +    S+   + ++L   F   ++++ LG      
Sbjct: 14  FLFIFLTLSNMIFEQITEDFSGLVKAAGNRSVISSIFLSLYAGFLATLLALLLGAPTGYI 73

Query: 202 -------RNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALL 254
                      +  +    +       G+ L+TV     ++           D L   ++
Sbjct: 74  LARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLESYIQFRDALPGIVV 133

Query: 255 GVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTF 314
            +   +  Y+A   R G +S+      AA SLG    +    + +P   + ++ G V T+
Sbjct: 134 AMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTW 193

Query: 315 IGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIF 365
                +   + I+  + ++G   +     ++  S +    ++ I     IF
Sbjct: 194 ARAISEFGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAVLLILVTLSIF 244


>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId:
           562]}
          Length = 174

 Score = 28.9 bits (65), Expect = 0.72
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 169 VETSLWGGLLVTLVISFFGIIISMPLGIL 197
            ET + G     LV   F I+    LGI+
Sbjct: 121 TETIIAGNAATALVALVFSILTGSALGII 149


>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system
           permease protein WtpB (ModB) {Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 252

 Score = 26.5 bits (57), Expect = 3.5
 Identities = 35/229 (15%), Positives = 78/229 (34%), Gaps = 9/229 (3%)

Query: 146 ILLFGLFPIFSFFVL----YGGLGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALG 201
           ILLF L P+ +   L    +     +  + ++W  +L T   +    +I++  G  LA  
Sbjct: 16  ILLFVLLPVAATVTLQLFNFDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYI 75

Query: 202 RNSNIPVLRYACITFIELFRGVPLVTV-----LFMASIMLPLFLPDTWDVDKLLRALLGV 256
                   +      ++L   +P         +   S  L         VD L   ++ +
Sbjct: 76  LARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSPLKFVDALPGIVVAM 135

Query: 257 SAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIG 316
              +        + G  S+       A +LG S L+    + +P  ++ ++ G + ++  
Sbjct: 136 LFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWAR 195

Query: 317 LFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIF 365
              +   + +I  + ++    +     +   S       I I     +F
Sbjct: 196 GISEFGAVVVIAYYPMIAPTLIYERYLSEGLSAAMPVAAILILLSLAVF 244


>d1gr0a2 d.81.1.3 (A:201-311) Myo-inositol 1-phosphate synthase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 111

 Score = 25.1 bits (55), Expect = 9.1
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 96  WAFIYDRYEQFIFGNYPM 113
             + Y R E   FG+ P+
Sbjct: 83  RKWAYVRLEGRAFGDVPL 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.147    0.466 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,497,636
Number of extensions: 71332
Number of successful extensions: 241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 17
Length of query: 386
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,213,086
Effective search space: 362712714
Effective search space used: 362712714
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.1 bits)