RPSBLAST alignment for GI: 254780173 and conserved domain: TIGR01184

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230
 Score =  119 bits (301), Expect = 6e-28
 Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 20/226 (8%)

Query: 33  LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
           L+ +NL + +GE + + G SG GKSTL+  I+ + +  +G +I+ G       + I E  
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEG-------KQITEPG 53

Query: 93  RDVGMVFQHFNLFSNLSVLENCTLGPIWV-RKMPKKDAEELAMHYLNKVKIADKSHRSSS 151
            D  +VFQ+++L   L+V EN  L    V   + K +   +   ++  V + + + +   
Sbjct: 54  PDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG 113

Query: 152 LLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMTMVCVTH 210
            LSGG  QR AIAR+L ++PK++L DEP  ALD      + + ++++ EE  +T++ VTH
Sbjct: 114 QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173

Query: 211 EMGFARQVADRVVFMDQ------GQIVEQNSP-----EEFFNNPQH 245
           ++  A  ++DRVV +        GQI+E   P      E   +P +
Sbjct: 174 DVDEALLLSDRVVMLTNGPAANIGQILEVPFPRPRDRLEVVEDPSY 219