RPSBLAST alignment for GI: 254780173 and conserved domain: TIGR01842

>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544

 Score = 86.2 bits (214), Expect = 8e-18
 Identities = 64/212 (30%), Positives = 97/212 (45%), Gaps = 28/212 (13%)

Query: 33  LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
           LR I+  +  GE + I GPSGSGKSTL R I  I    +G + ++G  L    R      
Sbjct: 334 LRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE--TFG 391

Query: 93  RDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSL 152
           + +G + Q   LF   +V EN        R     D E++    +   K+A        L
Sbjct: 392 KHIGYLPQDVELFPG-TVAENIA------RFGENADPEKI----IEAAKLAGVHELILRL 440

Query: 153 --------------LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL 198
                         LSGG+ QR A+AR+L   PK+++ DEP S LD E  + + + +  L
Sbjct: 441 PDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL 500

Query: 199 AEEGMTMVCVTHEMGFARQVADRVVFMDQGQI 230
              G+T+V +TH         D+++ +  G+I
Sbjct: 501 KARGITVVVITHRPS-LLGCVDKILVLQDGRI 531