RPSBLAST alignment for GI: 254780173 and conserved domain: TIGR03375
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694
Score = 126 bits (318), Expect = 7e-30
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 35/225 (15%)
Query: 31 HALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIH- 89
AL +++L + GE+V I G GSGKSTL++ + + + G ++++G+ DIR I
Sbjct: 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV----DIRQIDP 534
Query: 90 -EVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIAD---- 144
++RR++G V Q LF ++ +N LG P D EE+ L ++A
Sbjct: 535 ADLRRNIGYVPQDPRLFYG-TLRDNIALG------APYADDEEI----LRAAELAGVTEF 583
Query: 145 -KSH----------RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLD 193
+ H R S LSGG+ Q A+AR+L P I+L DEPTSA+D + D
Sbjct: 584 VRRHPDGLDMQIGERGRS-LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642
Query: 194 IMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
+ G T+V VTH V DR++ MD G+IV ++
Sbjct: 643 RLKRWL-AGKTLVLVTHRTSLLDLV-DRIIVMDNGRIVADGPKDQ 685